diff --git a/conf/test_full.config b/conf/test_full.config index 84595dfa..e8966981 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -17,3 +17,28 @@ params { // File containing SRA ids from nf-core/rnaseq -profile test_full for full-sized test input = 'https://raw.githubusercontent.com/nf-core/test-datasets/100736c99d87667fb7c247c267bc8acfac647bed/testdata/v1.12.0/sra_ids_rnaseq_test_full.csv' } + +process { + withName: 'NFCORE_FETCHNGS:SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS' { + cpus = { 1 * task.attempt } + memory = { 1.GB * task.attempt } + } + withName: 'NFCORE_FETCHNGS:SRA:MULTIQC_MAPPINGS_CONFIG' { + cpus = { 1 * task.attempt } + memory = { 1.GB * task.attempt } + } + withName: 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP' { + cpus = { 1 * task.attempt } + memory = { 1.GB * task.attempt } + } + withName: 'NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO' { + cpus = { 1 * task.attempt } + memory = { 1.GB * task.attempt } + } + withName: 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP' { + cpus = { 1 * task.attempt } + memory = { 1.GB * task.attempt } + } + errorStrategy = 'retry' + maxRetries = 2 +}