diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1d02035e..f45e42aa 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -72,31 +72,31 @@ jobs: run: | nextflow run ${GITHUB_WORKSPACE} -profile test_bgc,docker --outdir ./results ${{ matrix.parameters }} - test_deeparg: - name: Run pipeline with test data (DeepARG only workflow) - # Only run on push if this is the nf-core dev branch (merged PRs) - if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/funcscan') }}" - runs-on: ubuntu-latest - strategy: - matrix: - NXF_VER: - - "23.04.0" - - "latest-everything" - parameters: - - "--annotation_tool bakta --annotation_bakta_db_downloadtype light" - - "--annotation_tool prodigal" - - "--annotation_tool prokka" - - "--annotation_tool pyrodigal" + # test_deeparg: #Tests switched off as long as DeepARG servers are unavaiable for database download. + # name: Run pipeline with test data (DeepARG only workflow) + # # Only run on push if this is the nf-core dev branch (merged PRs) + # if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/funcscan') }}" + # runs-on: ubuntu-latest + # strategy: + # matrix: + # NXF_VER: + # - "23.04.0" + # - "latest-everything" + # parameters: + # - "--annotation_tool bakta --annotation_bakta_db_downloadtype light" + # - "--annotation_tool prodigal" + # - "--annotation_tool prokka" + # - "--annotation_tool pyrodigal" - steps: - - name: Check out pipeline code - uses: actions/checkout@v2 + # steps: + # - name: Check out pipeline code + # uses: actions/checkout@v2 - - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 - with: - version: "${{ matrix.NXF_VER }}" + # - name: Install Nextflow + # uses: nf-core/setup-nextflow@v1 + # with: + # version: "${{ matrix.NXF_VER }}" - - name: Run pipeline with test data (DeepARG workflow) - run: | - nextflow run ${GITHUB_WORKSPACE} -profile test_deeparg,docker --outdir ./results ${{ matrix.parameters }} + # - name: Run pipeline with test data (DeepARG workflow) + # run: | + # nextflow run ${GITHUB_WORKSPACE} -profile test_deeparg,docker --outdir ./results ${{ matrix.parameters }} diff --git a/CHANGELOG.md b/CHANGELOG.md index d308f7be..158fff30 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.1.3dev - [unreleased] +## v1.1.3 - [2023-08-09] ### `Added` diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 0c328048..25990a0d 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/funcscan + This report has been generated by the nf-core/funcscan analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-funcscan-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index 4f2edc18..95ffa0c1 100644 --- a/nextflow.config +++ b/nextflow.config @@ -391,7 +391,7 @@ manifest { description = """Pipeline for screening for functional components of assembled contigs""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.1.3dev' + version = '1.1.3' doi = '10.5281/zenodo.7643099' }