diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 1d02035e..f45e42aa 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -72,31 +72,31 @@ jobs:
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test_bgc,docker --outdir ./results ${{ matrix.parameters }}
- test_deeparg:
- name: Run pipeline with test data (DeepARG only workflow)
- # Only run on push if this is the nf-core dev branch (merged PRs)
- if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/funcscan') }}"
- runs-on: ubuntu-latest
- strategy:
- matrix:
- NXF_VER:
- - "23.04.0"
- - "latest-everything"
- parameters:
- - "--annotation_tool bakta --annotation_bakta_db_downloadtype light"
- - "--annotation_tool prodigal"
- - "--annotation_tool prokka"
- - "--annotation_tool pyrodigal"
+ # test_deeparg: #Tests switched off as long as DeepARG servers are unavaiable for database download.
+ # name: Run pipeline with test data (DeepARG only workflow)
+ # # Only run on push if this is the nf-core dev branch (merged PRs)
+ # if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/funcscan') }}"
+ # runs-on: ubuntu-latest
+ # strategy:
+ # matrix:
+ # NXF_VER:
+ # - "23.04.0"
+ # - "latest-everything"
+ # parameters:
+ # - "--annotation_tool bakta --annotation_bakta_db_downloadtype light"
+ # - "--annotation_tool prodigal"
+ # - "--annotation_tool prokka"
+ # - "--annotation_tool pyrodigal"
- steps:
- - name: Check out pipeline code
- uses: actions/checkout@v2
+ # steps:
+ # - name: Check out pipeline code
+ # uses: actions/checkout@v2
- - name: Install Nextflow
- uses: nf-core/setup-nextflow@v1
- with:
- version: "${{ matrix.NXF_VER }}"
+ # - name: Install Nextflow
+ # uses: nf-core/setup-nextflow@v1
+ # with:
+ # version: "${{ matrix.NXF_VER }}"
- - name: Run pipeline with test data (DeepARG workflow)
- run: |
- nextflow run ${GITHUB_WORKSPACE} -profile test_deeparg,docker --outdir ./results ${{ matrix.parameters }}
+ # - name: Run pipeline with test data (DeepARG workflow)
+ # run: |
+ # nextflow run ${GITHUB_WORKSPACE} -profile test_deeparg,docker --outdir ./results ${{ matrix.parameters }}
diff --git a/CHANGELOG.md b/CHANGELOG.md
index d308f7be..158fff30 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## v1.1.3dev - [unreleased]
+## v1.1.3 - [2023-08-09]
### `Added`
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index 0c328048..25990a0d 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
report_comment: >
- This report has been generated by the nf-core/funcscan
+ This report has been generated by the nf-core/funcscan
analysis pipeline. For information about how to interpret these results, please see the
- documentation.
+ documentation.
report_section_order:
"nf-core-funcscan-methods-description":
order: -1000
diff --git a/nextflow.config b/nextflow.config
index 4f2edc18..95ffa0c1 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -391,7 +391,7 @@ manifest {
description = """Pipeline for screening for functional components of assembled contigs"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
- version = '1.1.3dev'
+ version = '1.1.3'
doi = '10.5281/zenodo.7643099'
}