diff --git a/CHANGELOG.md b/CHANGELOG.md
index 67b1238a..6e889026 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,16 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v2.1.0 - [unreleased]
+
+### `Added`
+
+### `Fixed`
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## v2.0.0 - [2024-09-05]
 
 ### `Breaking change`
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index 5471c44d..45ddd48c 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/funcscan/releases/tag/2.0.0" target="_blank">nf-core/funcscan</a>
+  This report has been generated by the <a href="https://github.com/nf-core/funcscan/tree/dev" target="_blank">nf-core/funcscan</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/funcscan/2.0.0/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/funcscan/dev/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-funcscan-methods-description":
     order: -1000
diff --git a/nextflow.config b/nextflow.config
index dea546e0..ca13a027 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -445,7 +445,7 @@ manifest {
     description     = """Pipeline for screening for functional components of assembled contigs"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '2.0.0'
+    version         = '2.1.0dev'
     doi             = '10.5281/zenodo.7643099'
 }