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Merqury inputs should use database+assembly (fasta, not fastq) #75

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stephenturner opened this issue Oct 30, 2024 · 0 comments · May be fixed by #76
Open

Merqury inputs should use database+assembly (fasta, not fastq) #75

stephenturner opened this issue Oct 30, 2024 · 0 comments · May be fixed by #76
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@stephenturner
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Merqury inputs should include the meryl db (created from reads), and the assembly.

input:
tuple val(meta), path(meryl_db), path(assembly)

Typo in the current implementation that joins to the reads (fasta), not the assembly.

ch_meryl_union
| join(ch_fastq)
| set {ch_merqury_inputs}

Need to change this to fasta, not fastq.

Also need to change this in the subworkflow nf-core/modules#6905

@stephenturner stephenturner self-assigned this Oct 30, 2024
stephenturner added a commit to stephenturner/modules that referenced this issue Oct 30, 2024
stephenturner added a commit to stephenturner/genomeqc that referenced this issue Oct 30, 2024
@stephenturner stephenturner linked a pull request Oct 30, 2024 that will close this issue
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