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Pipeline fails if only CONCOCT is turned on and other binners off #590

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jfy133 opened this issue Feb 16, 2024 · 0 comments · Fixed by #667
Open

Pipeline fails if only CONCOCT is turned on and other binners off #590

jfy133 opened this issue Feb 16, 2024 · 0 comments · Fixed by #667
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jfy133 commented Feb 16, 2024

Description of the bug

Fails due to the if/else statement around input to SPLIT_FASTA in binning.nf only consideres maxbin2 and/or metabat or both (CONCOCT does not produce 'unbins'). Should add logic to account for this, and allow pipeline to continue even after without SPLIT_FASTA

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Improve condition so SPLIT_FASTQ skipped if only concoct selected as … nf-core/mag
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