diff --git a/.nf-core.yml b/.nf-core.yml index 5d193256..f945d00c 100644 --- a/.nf-core.yml +++ b/.nf-core.yml @@ -18,5 +18,5 @@ template: org: nf-core outdir: . skip_features: null - version: 3.2.0 + version: 3.2.1 update: null diff --git a/CHANGELOG.md b/CHANGELOG.md index 43c68211..f7b929e3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,20 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## 3.2.1 [2024-10-30] + +### `Added` + +### `Changed` + +### `Fixed` + +- [#707](https://github.com/nf-core/mag/pull/674) - Fix missing space resulting in malformed args for MEGAHIT (reported by @d4straub, fix by @jfy133) + +### `Dependencies` + +### `Deprecated` + ## 3.2.0 [2024-10-27] ### `Added` diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index e9da7a41..434dfa7b 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/mag + This report has been generated by the nf-core/mag analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-mag-methods-description": order: -1000 diff --git a/conf/modules.config b/conf/modules.config index 0fbea292..507e475f 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -257,7 +257,7 @@ process { } withName: MEGAHIT { - ext.args = { params.megahit_options ? params.megahit_options + "-m ${task.memory.toBytes()}" : "-m ${task.memory.toBytes()}" } + ext.args = { params.megahit_options ? params.megahit_options + " -m ${task.memory.toBytes()}" : "-m ${task.memory.toBytes()}" } ext.prefix = { "MEGAHIT-${meta.id}" } publishDir = [path: { "${params.outdir}/Assembly/MEGAHIT" }, mode: params.publish_dir_mode, pattern: "*.{fa.gz,log}"] } diff --git a/nextflow.config b/nextflow.config index 026f67d8..4c5e67fa 100644 --- a/nextflow.config +++ b/nextflow.config @@ -375,7 +375,7 @@ manifest { description = """Assembly, binning and annotation of metagenomes""" mainScript = 'main.nf' nextflowVersion = '!>=24.04.2' - version = '3.2.0' + version = '3.2.1' doi = '10.1093/nargab/lqac007' }