diff --git a/modules/nf-core/samtools/view/environment.yml b/modules/nf-core/samtools/view/environment.yml index b0676f338e4..56a5efc83d6 100644 --- a/modules/nf-core/samtools/view/environment.yml +++ b/modules/nf-core/samtools/view/environment.yml @@ -4,5 +4,7 @@ channels: - bioconda - defaults dependencies: + # renovate: datasource=conda depName=bioconda/samtools - bioconda::samtools=1.19.2 + # renovate: datasource=conda depName=bioconda/htslib - bioconda::htslib=1.19.1 diff --git a/modules/nf-core/samtools/view/main.nf b/modules/nf-core/samtools/view/main.nf index 5a8989d6976..e45361d8593 100644 --- a/modules/nf-core/samtools/view/main.nf +++ b/modules/nf-core/samtools/view/main.nf @@ -3,9 +3,7 @@ process SAMTOOLS_VIEW { label 'process_low' conda "${moduleDir}/environment.yml" - container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/samtools:1.19.2--h50ea8bc_0' : - 'biocontainers/samtools:1.19.2--h50ea8bc_0' }" + container "nf-core/modules/samtools_view:samtools_view--4731ee50a742fc67" input: tuple val(meta), path(input), path(index)