diff --git a/modules/nf-core/spring/decompress/test/main.nf.test b/modules/nf-core/spring/decompress/tests/main.nf.test similarity index 100% rename from modules/nf-core/spring/decompress/test/main.nf.test rename to modules/nf-core/spring/decompress/tests/main.nf.test diff --git a/modules/nf-core/spring/decompress/test/main.nf.test.snap b/modules/nf-core/spring/decompress/tests/main.nf.test.snap similarity index 100% rename from modules/nf-core/spring/decompress/test/main.nf.test.snap rename to modules/nf-core/spring/decompress/tests/main.nf.test.snap diff --git a/modules/nf-core/spring/decompress/test/nextflow.config b/modules/nf-core/spring/decompress/tests/nextflow.config similarity index 100% rename from modules/nf-core/spring/decompress/test/nextflow.config rename to modules/nf-core/spring/decompress/tests/nextflow.config diff --git a/modules/nf-core/spring/decompress/test/tags.yml b/modules/nf-core/spring/decompress/tests/tags.yml similarity index 100% rename from modules/nf-core/spring/decompress/test/tags.yml rename to modules/nf-core/spring/decompress/tests/tags.yml diff --git a/tests/modules/nf-core/spring/decompress/main.nf b/tests/modules/nf-core/spring/decompress/main.nf deleted file mode 100644 index 0a6b7fdc725..00000000000 --- a/tests/modules/nf-core/spring/decompress/main.nf +++ /dev/null @@ -1,30 +0,0 @@ -#!/usr/bin/env nextflow - -nextflow.enable.dsl = 2 - -include { SPRING_COMPRESS } from '../../../../../modules/nf-core/spring/compress/main.nf' -include { SPRING_DECOMPRESS } from '../../../../../modules/nf-core/spring/decompress/main.nf' - -workflow test_spring_decompress_single_end { - - input = [ - [ id:'test' ], // meta map - file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true), - [] - ] - - SPRING_COMPRESS ( input ) - SPRING_DECOMPRESS ( SPRING_COMPRESS.out.spring, true ) -} - -workflow test_spring_decompress_paired_end { - - input = [ - [ id:'test' ], // meta map - file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true), - file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) - ] - - SPRING_COMPRESS ( input ) - SPRING_DECOMPRESS ( SPRING_COMPRESS.out.spring, false ) -} diff --git a/tests/modules/nf-core/spring/decompress/nextflow.config b/tests/modules/nf-core/spring/decompress/nextflow.config deleted file mode 100644 index 50f50a7a357..00000000000 --- a/tests/modules/nf-core/spring/decompress/nextflow.config +++ /dev/null @@ -1,5 +0,0 @@ -process { - - publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } - -} \ No newline at end of file diff --git a/tests/modules/nf-core/spring/decompress/test.yml b/tests/modules/nf-core/spring/decompress/test.yml deleted file mode 100644 index 995911a1984..00000000000 --- a/tests/modules/nf-core/spring/decompress/test.yml +++ /dev/null @@ -1,23 +0,0 @@ -- name: spring decompress test_spring_decompress_single_end - command: nextflow run ./tests/modules/nf-core/spring/decompress -entry test_spring_decompress_single_end -c ./tests/config/nextflow.config - tags: - - spring - - spring/decompress - files: - - path: output/spring/test.fastq.gz - md5sum: e71acb18cb172037d021daf2801e6d18 - - path: output/spring/test.spring - - path: output/spring/versions.yml - -- name: spring decompress test_spring_decompress_paired_end - command: nextflow run ./tests/modules/nf-core/spring/decompress -entry test_spring_decompress_paired_end -c ./tests/config/nextflow.config - tags: - - spring - - spring/decompress - files: - - path: output/spring/test.spring - - path: output/spring/test_R1.fastq.gz - md5sum: e71acb18cb172037d021daf2801e6d18 - - path: output/spring/test_R2.fastq.gz - md5sum: 5bba6e618e512f541d297a35a521c747 - - path: output/spring/versions.yml