From fec9d72d60e6c3e73f16730599fb766b34245790 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Tue, 25 Jul 2023 11:32:40 +0200 Subject: [PATCH] fix channel queue to value --- .../nf-core/vcf_annotate_ensemblvep_snpeff/main.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/tests/subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/main.nf b/tests/subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/main.nf index 202c8e33b01..0d44a919ee0 100644 --- a/tests/subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/main.nf +++ b/tests/subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/main.nf @@ -28,7 +28,7 @@ workflow vcf_annotate_ensemblvep_snpeff_vep { ENSEMBLVEP_DOWNLOAD(vep_cache_input) - vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] } + vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] }.first() VCF_ANNOTATE_ENSEMBLVEP_SNPEFF ( input, @@ -94,7 +94,7 @@ workflow vcf_annotate_ensemblvep_snpeff_both { ENSEMBLVEP_DOWNLOAD(vep_cache_input) - vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] } + vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] }.first() VCF_ANNOTATE_ENSEMBLVEP_SNPEFF ( input, @@ -134,7 +134,7 @@ workflow vcf_annotate_ensemblvep_snpeff_large_chunks { ENSEMBLVEP_DOWNLOAD(vep_cache_input) - vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] } + vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] }.first() VCF_ANNOTATE_ENSEMBLVEP_SNPEFF ( input, @@ -174,7 +174,7 @@ workflow vcf_annotate_ensemblvep_snpeff_no_scatter { ENSEMBLVEP_DOWNLOAD(vep_cache_input) - vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] } + vep_cache = ENSEMBLVEP_DOWNLOAD.out.cache.map{ meta, cache -> [cache] }.first() VCF_ANNOTATE_ENSEMBLVEP_SNPEFF ( input,