Database uniref30_2202_db does not exist while running colabfold local

[nash73b91203005]

Description of the bug

The python code search.py cannot find uniref30_2202_db even though I already specified the path. Maybe I lost something important? Thanks a lot in advance.

ERROR ~ Error executing process > 'NFCORE_PROTEINFOLD:COLABFOLD:MMSEQS_COLABFOLDSEARCH (T478K_T1)'
Caused by:
Process NFCORE_PROTEINFOLD:COLABFOLD:MMSEQS_COLABFOLDSEARCH (T478K_T1) terminated with an error exit status (1)
Traceback (most recent call last):
File "/colabfold_batch/colabfold-conda/bin/colabfold_search", line 8, in
sys.exit(main())
File "/colabfold_batch/colabfold-conda/lib/python3.7/site-packages/colabfold/mmseqs/search.py", line 444, in main
threads=args.threads,
File "/colabfold_batch/colabfold-conda/lib/python3.7/site-packages/colabfold/mmseqs/search.py", line 66, in mmseqs_search_monomer
raise FileNotFoundError(f"Database {db} does not exist")
FileNotFoundError: Database uniref30_2202_db does not exist

Command used and terminal output

nextflow -bg run nf-core/proteinfold --input samplesheet.csv --outdir ./ --mode colabfold --colabfold_server local --num_recycle 3 --use_amber false --colabfold_model_preset AlphaFold2-ptm --use_gpu false --db_load_mode 0 -profile docker --colabfold_db_path ./colabfold_envdb_202108 --uniref30_path ./uniref30_2202_db --colabfold_alphafold2_params_path ./alphafold_params_2021-07-14 --max_memory 80.GB --colabfold_db ./

Relevant files

No response

System information

No response

[JoseEspinosa]

Hi @nash73b91203005 thanks for reporting. Are you sure you provided the correct path to uniref? I tried to reproduce your error and I can only do it when I provide a wrong path to the --uniref30_path parameter.

[JoseEspinosa]

Closed by inactivity, if you need any further assistance feel free to reopen it

[vrennie]

Hi @JoseEspinosa I have the same issue, directory looks like this, seems as though all files are there. Any ideas what might be going wrong?

Thanks

[JoseEspinosa]

Which version of the pipeline are you using?
Could you also provide the command you used to run the pipeline and any config you are using?