From 86088796705ce60d2dab43d41f7bf3c3b0b6992e Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Tue, 25 Jun 2024 12:41:06 +0200 Subject: [PATCH 1/2] Use stable version of tools for download CI --- .github/workflows/download_pipeline.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml index 2d20d644..7ad4e229 100644 --- a/.github/workflows/download_pipeline.yml +++ b/.github/workflows/download_pipeline.yml @@ -46,7 +46,7 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install git+https://github.com/nf-core/tools.git@dev + pip install git+https://github.com/nf-core/tools.git - name: Get the repository name and current branch set as environment variable run: | @@ -58,7 +58,7 @@ jobs: env: NXF_SINGULARITY_CACHEDIR: ./ run: | - nf-core download ${{ env.REPO_LOWERCASE }} \ + nf-core pipelines download ${{ env.REPO_LOWERCASE }} \ --revision ${{ env.REPO_BRANCH }} \ --outdir ./${{ env.REPOTITLE_LOWERCASE }} \ --compress "none" \ From c9935171ba2501164a93cd682f94d7ad0429cea3 Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Tue, 25 Jun 2024 12:59:54 +0200 Subject: [PATCH 2/2] Get rid of leak --- .github/workflows/download_pipeline.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml index 7ad4e229..640ac03c 100644 --- a/.github/workflows/download_pipeline.yml +++ b/.github/workflows/download_pipeline.yml @@ -58,7 +58,7 @@ jobs: env: NXF_SINGULARITY_CACHEDIR: ./ run: | - nf-core pipelines download ${{ env.REPO_LOWERCASE }} \ + nf-core download ${{ env.REPO_LOWERCASE }} \ --revision ${{ env.REPO_BRANCH }} \ --outdir ./${{ env.REPOTITLE_LOWERCASE }} \ --compress "none" \