diff --git a/subworkflows/local/alignment/align_sentieon.nf b/subworkflows/local/alignment/align_sentieon.nf index 2f172714..25673f2e 100644 --- a/subworkflows/local/alignment/align_sentieon.nf +++ b/subworkflows/local/alignment/align_sentieon.nf @@ -41,7 +41,7 @@ workflow ALIGN_SENTIEON { .set{ merge_bams_in } SENTIEON_READWRITER ( merge_bams_in.multiple, ch_genome_fasta, ch_genome_fai ) - ch_bam_bai = merge_bams_in.single.mix(SENTIEON_READWRITER.out.bam_bai) + ch_bam_bai = merge_bams_in.single.mix(SENTIEON_READWRITER.out.output_index) SENTIEON_DATAMETRICS (ch_bam_bai, ch_genome_fasta, ch_genome_fai )