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Option to publish GVCFs #602

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sitems opened this issue Aug 20, 2024 · 2 comments
Open

Option to publish GVCFs #602

sitems opened this issue Aug 20, 2024 · 2 comments
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enhancement Improvement for existing functionality

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@sitems
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sitems commented Aug 20, 2024

Description of feature

Is it possible to publish GVCF file for every sample?
@sitems sitems added the enhancement Improvement for existing functionality label Aug 20, 2024
@asp8200
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asp8200 commented Aug 20, 2024 •
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I'd guess it is just a matter of adjusting some so publishDir and saveAs options in some configs for the relevant variant-callers. (You might even be able to do that in a custom-config for those variant-callers.) Which variant-callers are you using the generate the gvcf-files?

@sitems
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sitems commented Aug 20, 2024

Cool, I'm using deep variant with custom config. If you could help me how to modify the config, that would be great.

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