From cdfb98b9dcb1512392c05af947bab2a637e21d12 Mon Sep 17 00:00:00 2001
From: Jonathan Manning <pininforthefjords@gmail.com>
Date: Tue, 22 Oct 2024 19:50:23 +0000
Subject: [PATCH] Fix config error

---
 subworkflows/local/align_star/nextflow.config | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/subworkflows/local/align_star/nextflow.config b/subworkflows/local/align_star/nextflow.config
index b676150dd..86960b2e1 100644
--- a/subworkflows/local/align_star/nextflow.config
+++ b/subworkflows/local/align_star/nextflow.config
@@ -36,11 +36,10 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeSAMoutput BanSingleEnd')
             }
         }
-        withName: 'ALIGN_STAR:STAR_ALIGN_IGENOMES' {
+        withName: '.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {
             ext.args   = {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeBan Singleend')
             }
-        
         }
         withName: '.*:ALIGN_STAR:STAR_ALIGN|.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {