diff --git a/tests/pipeline/test_downstream.nf.test.snap b/tests/pipeline/test_downstream.nf.test.snap index 75f12d8..4587197 100644 --- a/tests/pipeline/test_downstream.nf.test.snap +++ b/tests/pipeline/test_downstream.nf.test.snap @@ -1,8 +1,12 @@ { - "software_versions": { + "nf_core_pipeline_software_mqc_versions.yml": { "content": [ - "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.7, yaml=5.4.1}, SPACERANGER_UNTAR_REFERENCE={untar=1.30}, ST_CLUSTERING={quarto=1.3.302, scanpy=1.9.3}, ST_QUALITY_CONTROLS={quarto=1.3.302, scanpy=1.9.3}, ST_READ_DATA={scanpy=1.7.2}, ST_SPATIAL_DE={SpatialDE=1.1.3, leidenalg=0.9.1, quarto=1.3.302, scanpy=1.9.3}, Workflow={nf-core/spatialtranscriptomics=1.0dev}}" + "{SPACERANGER_UNTAR_REFERENCE={untar=1.3}, ST_CLUSTERING={quarto=1.4.549, papermill=null}, ST_QUALITY_CONTROLS={quarto=1.4.549, papermill=null}, ST_READ_DATA={scanpy=1.9.8}, ST_SVG={quarto=1.4.549, papermill=null}, UNTAR_DOWNSTREAM_INPUT={untar=1.3}, Workflow={nf-core/spatialtranscriptomics=v1.0dev}}" ], - "timestamp": "2024-01-15T16:00:03.485826" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-03-07T13:23:56.226763" } -} +} \ No newline at end of file diff --git a/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap index 441c711..c36ecfc 100644 --- a/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap +++ b/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap @@ -3,6 +3,20 @@ "content": [ "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.7, yaml=5.4.1}, FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.30}, ST_CLUSTERING={quarto=1.3.302, scanpy=1.9.3}, ST_QUALITY_CONTROLS={quarto=1.3.302, scanpy=1.9.3}, ST_READ_DATA={scanpy=1.7.2}, ST_SPATIAL_DE={SpatialDE=1.1.3, leidenalg=0.9.1, quarto=1.3.302, scanpy=1.9.3}, Workflow={nf-core/spatialtranscriptomics=1.0dev}}" ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, "timestamp": "2024-01-15T13:44:40.789425" + }, + "nf_core_pipeline_software_mqc_versions.yml": { + "content": [ + "{FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.3}, ST_CLUSTERING={quarto=1.4.549, papermill=null}, ST_QUALITY_CONTROLS={quarto=1.4.549, papermill=null}, ST_READ_DATA={scanpy=1.9.8}, ST_SVG={quarto=1.4.549, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.3}, Workflow={nf-core/spatialtranscriptomics=v1.0dev}}" + ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-03-07T13:55:24.407294" } -} +} \ No newline at end of file diff --git a/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap index 1dad690..02e6954 100644 --- a/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap +++ b/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap @@ -1,8 +1,12 @@ { - "software_versions": { + "nf_core_pipeline_software_mqc_versions.yml": { "content": [ - "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.7, yaml=5.4.1}, FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.30}, ST_CLUSTERING={quarto=1.3.302, scanpy=1.9.3}, ST_QUALITY_CONTROLS={quarto=1.3.302, scanpy=1.9.3}, ST_READ_DATA={scanpy=1.7.2}, ST_SPATIAL_DE={SpatialDE=1.1.3, leidenalg=0.9.1, quarto=1.3.302, scanpy=1.9.3}, Workflow={nf-core/spatialtranscriptomics=1.0dev}}" + "{FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.3}, ST_CLUSTERING={quarto=1.4.549, papermill=null}, ST_QUALITY_CONTROLS={quarto=1.4.549, papermill=null}, ST_READ_DATA={scanpy=1.9.8}, ST_SVG={quarto=1.4.549, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.3}, Workflow={nf-core/spatialtranscriptomics=v1.0dev}}" ], - "timestamp": "2024-01-15T15:42:52.651007" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-03-07T14:28:20.163729" } -} +} \ No newline at end of file