Running prettier on new pipeline during pipelines create fails silently

[awgymer]

Description of the bug

In solving #3262 I discovered that the actual error is not simply in pipelines lint but rather that the code is broken for pipelines create when creating a brand new repo but in that instance you get a different error which is silently swallowed (due in part to the textual interface hiding certain logging).

Running textual console to capture print statements and switching logging to print reveals that when initially creating a pipeline with the command, the pre-commit prettier command fails due not being inside a git repository. You can make it fail loud (in the same way as running pipelines lint) if you run nf-core pipelines create from inside a git repository (that doesn't have a .prettierignore).

Command used and terminal output

nf-core pipelines create

... Follow TUI to create an nf-core pipeline (includes prettier config)

<THE FOLLOWING IS FROM TEXTUAL CONSOLE DEBUGGING>

RUNNING PRETTIER

[14:31:22] PRINT                                                                                                                                                                                                          lint_utils.py:95
FAILED PRETTIER: STDOUT: An error has occurred: FatalError: git failed. Is it installed, and are you in a Git repository directory?

System information

No response