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State of R in cwl #6

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caroott opened this issue Sep 20, 2021 · 0 comments
Open

State of R in cwl #6

caroott opened this issue Sep 20, 2021 · 0 comments

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@caroott
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caroott commented Sep 20, 2021

  • A script without any packages can be executed and parameters can be given as cli arguments
  • Packages that just need to be downloaded can be added
    • Requirements:
      • Staged download directory
      • Specification of staged directory when opening the library in R
  • Some packages or their dependencies require installation or external downloaders (e.g. BiocManager), which often fails to install/download
    • This problem is likely related to missing permissions
    • Can for some packages be circumvented by using base-images, that have required dependencies already installed
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@caroott