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.gitignore
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.gitignore
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# OSX files
.DS_Store
/tests/output_riboseed_tests/
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/
# Translations
*.mo
*.pot
# Django stuff:
*.log
local_settings.py
# Flask stuff:
instance/
.webassets-cache
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# IPython Notebook
.ipynb_checkpoints
# pyenv
.python-version
# celery beat schedule file
celerybeat-schedule
# dotenv
.env
# virtualenv
venv/
ENV/
venv*
# Spyder project settings
.spyderproject
# Rope project settings
.ropeproject
*.sma
*.smi
*.sslist
# Emacs intermediate files
*~
\#*#
.\#*
# my testing dirs
test_sel/*
test_snag/*
test_seed/*
tests/output_riboseed2_tests/
test_ribo2/
test_mapps/
*.sslist
manuscript_results/simulated_genome/seed_kleb_concatenated/
manuscript_results/simulated_genome/seed_concatenated/
manuscript_results/simulated_reads_kleb/reads/
manuscript_results/simulated_reads_coli/reads/
manuscript_results/simulated_genome/seed_kleb_concatenated_coli_reads/
tests/output_*/
tests/manuscript_*/
manuscript_*/
docs/.sass-cache/
docs/_site/
*aux
*ind
*ilg
*bbl
*blg
.out
*.out
readthedocs/_build/
readthedocs/_static/
readthedocs/_template/
201*/
Waters_et_al_2017/ms/auto/