You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Caused by op 'clinical_concept_extraction/copy_0/cond_2/ReverseSequence', defined at:
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/main.py", line 45, in
cli.main()
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/../debugpy/server/cli.py", line 444, in main
run()
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/../debugpy/server/cli.py", line 285, in run_file
runpy.run_path(target_as_str, run_name=compat.force_str("main"))
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 263, in run_path
pkg_name=pkg_name, script_name=fname)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 96, in _run_module_code
mod_name, mod_spec, pkg_name, script_name)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 295, in
tf.app.run()
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/platform/app.py", line 126, in run
_sys.exit(main(argv))
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 289, in main
train()
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 230, in train
train_files, train=True, reuse=False)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 164, in generate_iterator_ops
ops = annotation_func_train(next_x, next_y, next_l, train=train, reuse=reuse)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 55, in annotation_func_train
tf.contrib.crf.crf_decode(logits, transition_params, l)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/contrib/crf/python/ops/crf.py", line 517, in crf_decode
false_fn=_multi_seq_fn)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/layers/utils.py", line 206, in smart_cond
pred, true_fn=true_fn, false_fn=false_fn, name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/smart_cond.py", line 59, in smart_cond
name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py", line 432, in new_func
return func(*args, **kwargs)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/control_flow_ops.py", line 2072, in cond
orig_res_f, res_f = context_f.BuildCondBranch(false_fn)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/control_flow_ops.py", line 1913, in BuildCondBranch
original_result = fn()
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/contrib/crf/python/ops/crf.py", line 490, in _multi_seq_fn
backpointers, sequence_length - 1, seq_dim=1)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/gen_array_ops.py", line 6449, in reverse_sequence
seq_dim=seq_dim, batch_dim=batch_dim, name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper
op_def=op_def)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3392, in create_op
op_def=op_def)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1718, in init
self._traceback = self._graph._extract_stack() # pylint: disable=protected-access
The text was updated successfully, but these errors were encountered:
Hi,
I met a problem that I can't solve. Could you please help look at this issus. Thx a lot!
It may occur at traning.py line 184 as below:
while True: try: results = sess.run(ops)
More detail:
InvalidArgumentError
seq_lens(13) < 0
[[Node: clinical_concept_extraction/copy_0/cond_2/ReverseSequence = ReverseSequence[T=DT_INT32, Tlen=DT_INT32, batch_dim=0, seq_dim=1, _device="/job:localhost/replica:0/task:0/device:CPU:0"](clinical_concept_extraction/copy_0/cond_2/rnn/transpose_1, clinical_concept_extraction/copy_0/cond_1/sub)]]
Caused by op 'clinical_concept_extraction/copy_0/cond_2/ReverseSequence', defined at:
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/main.py", line 45, in
cli.main()
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/../debugpy/server/cli.py", line 444, in main
run()
File "/Users/fengchang/.vscode/extensions/ms-python.python-2021.2.633441544/pythonFiles/lib/python/debugpy/../debugpy/server/cli.py", line 285, in run_file
runpy.run_path(target_as_str, run_name=compat.force_str("main"))
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 263, in run_path
pkg_name=pkg_name, script_name=fname)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 96, in _run_module_code
mod_name, mod_spec, pkg_name, script_name)
File "/anaconda3/envs/tensorflow/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 295, in
tf.app.run()
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/platform/app.py", line 126, in run
_sys.exit(main(argv))
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 289, in main
train()
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 230, in train
train_files, train=True, reuse=False)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 164, in generate_iterator_ops
ops = annotation_func_train(next_x, next_y, next_l, train=train, reuse=reuse)
File "/Users/fengchang/Desktop/毕设代码/CE_BiLSTM-CRF/training_scripts/training.py", line 55, in annotation_func_train
tf.contrib.crf.crf_decode(logits, transition_params, l)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/contrib/crf/python/ops/crf.py", line 517, in crf_decode
false_fn=_multi_seq_fn)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/layers/utils.py", line 206, in smart_cond
pred, true_fn=true_fn, false_fn=false_fn, name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/smart_cond.py", line 59, in smart_cond
name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py", line 432, in new_func
return func(*args, **kwargs)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/control_flow_ops.py", line 2072, in cond
orig_res_f, res_f = context_f.BuildCondBranch(false_fn)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/control_flow_ops.py", line 1913, in BuildCondBranch
original_result = fn()
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/contrib/crf/python/ops/crf.py", line 490, in _multi_seq_fn
backpointers, sequence_length - 1, seq_dim=1)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/ops/gen_array_ops.py", line 6449, in reverse_sequence
seq_dim=seq_dim, batch_dim=batch_dim, name=name)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper
op_def=op_def)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3392, in create_op
op_def=op_def)
File "/anaconda3/envs/tensorflow/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1718, in init
self._traceback = self._graph._extract_stack() # pylint: disable=protected-access
The text was updated successfully, but these errors were encountered: