diff --git a/.github/actions/install-pkg/action.yml b/.github/actions/install-pkg/action.yml new file mode 100644 index 00000000..af1ebfe7 --- /dev/null +++ b/.github/actions/install-pkg/action.yml @@ -0,0 +1,23 @@ +name: Install earthaccess Python package +description: Install earthaccess Python package and testing dependencies + +inputs: + python-version: + required: true + +runs: + using: composite + steps: + - uses: actions/setup-python@v5 + with: + python-version: ${{ inputs.python-version }} + cache: pip + + - name: Display full python version + shell: bash + id: full-python-version + run: echo "{version}=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))")" >> $GITHUB_OUTPUT + + - name: Install package and test dependencies + shell: bash + run: pip install .[test] diff --git a/.github/workflows/integration-test.yml b/.github/workflows/integration-test.yml index e0e3ca07..cb013525 100644 --- a/.github/workflows/integration-test.yml +++ b/.github/workflows/integration-test.yml @@ -17,10 +17,6 @@ concurrency: group: integration-tests-${{ github.ref }} cancel-in-progress: true -defaults: - run: - shell: bash -l {0} - jobs: integration-tests: runs-on: ubuntu-latest @@ -31,44 +27,19 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 + + - uses: ./.github/actions/install-pkg with: python-version: ${{ matrix.python-version }} - - name: Get full python version - id: full-python-version - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") - - name: Install poetry - uses: abatilo/actions-poetry@v3 - - name: Configure poetry - run: | - poetry config virtualenvs.create true --local - poetry config virtualenvs.in-project true --local - poetry self add setuptools - - name: Set up cache - uses: actions/cache@v4 - id: cache - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('poetry.lock') }} - - name: Ensure cache is healthy - if: steps.cache.outputs.cache-hit == 'true' - run: poetry run pip --version >/dev/null 2>&1 || rm -rf .venv - - name: Install Dependencies - if: ${{ !env.ACT }} - run: poetry install - - name: Install Dependencies - if: ${{ env.ACT }} - # When using `act` to run the workflow locally, the `poetry install` command - # may fail due to network issues when running multiple Docker containers. - run: poetry install || poetry install || poetry install + - name: Test env: EARTHDATA_USERNAME: ${{ secrets.EDL_USERNAME }} EARTHDATA_PASSWORD: ${{ secrets.EDL_PASSWORD }} EARTHACCESS_TEST_USERNAME: ${{ secrets.EDL_USERNAME }} EARTHACCESS_TEST_PASSWORD: ${{ secrets.EDL_PASSWORD }} - run: poetry run bash scripts/integration-test.sh + run: ./scripts/integration-test.sh + - name: Upload coverage # Don't upload coverage when using the `act` tool to run the workflow locally if: ${{ !env.ACT }} diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 12f158cb..9d9acd42 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -5,13 +5,32 @@ on: jobs: build: + name: Build package runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 + - name: verify version matches git tag run: scripts/verify_tag.sh - - name: Build and publish to pypi - uses: JRubics/poetry-publish@v2.0 + + - uses: hynek/build-and-inspect-python-package@v2 + + publish: + name: Publish to PyPI + needs: ["build"] + runs-on: ubuntu-latest + environment: pypi + permissions: + id-token: write + steps: + - uses: actions/download-artifact@v4 + with: + name: Packages + path: dist + + - uses: pypa/gh-action-pypi-publish@release/v1 + # NOTE: This is not the current best practice. Instead, we should use + # "trusted publishing": + # https://github.com/pypa/gh-action-pypi-publish?tab=readme-ov-file#trusted-publishing with: - python_version: "3.9" - pypi_token: ${{ secrets.PYPI_TOKEN }} + password: ${{ secrets.PYPI_TOKEN }} diff --git a/.github/workflows/test-mindeps.yml b/.github/workflows/test-mindeps.yml index e432280a..3be5bb01 100644 --- a/.github/workflows/test-mindeps.yml +++ b/.github/workflows/test-mindeps.yml @@ -1,4 +1,4 @@ -name: Test minimum dependencies +name: Unit test minimum dependencies on: push: @@ -11,11 +11,6 @@ concurrency: group: test-mindeps-${{ github.ref }} cancel-in-progress: true -# Required shell entrypoint to have properly activated conda environments -defaults: - run: - shell: bash -l {0} - jobs: test-mindeps: runs-on: ubuntu-latest @@ -25,25 +20,26 @@ jobs: steps: - name: Checkout source uses: actions/checkout@v4.1.1 - - name: Setup Conda Environment - uses: conda-incubator/setup-miniconda@v3.0.4 + + - name: Install uv + uses: astral-sh/setup-uv@v2 + with: + version: "0.4.7" + enable-cache: true + + - name: Set up Python + uses: actions/setup-python@v5 with: - miniforge-variant: Mambaforge - miniforge-version: latest - use-mamba: true - channel-priority: strict - environment-file: ci/environment-mindeps.yaml - activate-environment: test-environment - auto-activate-base: false + python-version-file: pyproject.toml - - name: Install - run: python -m pip install --no-deps -e . + - name: Install minimum-compatible dependencies + run: uv sync --resolution lowest-direct --extra test - - name: mamba list - run: mamba list + - name: Install earthaccess + run: uv pip install --no-deps . - name: Test - run: bash scripts/test.sh + run: uv run pytest tests/unit --cov=earthaccess --cov=tests --cov-report=term-missing --capture=no --tb=native --log-cli-level=INFO - name: Upload coverage # Don't upload coverage when using the `act` tool to run the workflow locally diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 19e1bd94..af5fd1f6 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -2,13 +2,11 @@ name: Unit Tests on: push: + branches: + - main pull_request: types: [opened, synchronize] -defaults: - run: - shell: bash -l {0} - jobs: unit-tests: runs-on: ubuntu-latest @@ -19,45 +17,17 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 + + - uses: ./.github/actions/install-pkg with: python-version: ${{ matrix.python-version }} - - name: Get full python version - id: full-python-version - run: echo "version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))")" >> $GITHUB_OUTPUT - - name: Install poetry - uses: abatilo/actions-poetry@v3 - - name: Configure poetry - run: | - poetry config virtualenvs.create true --local - poetry config virtualenvs.in-project true --local - poetry self add setuptools - - name: Set up mypy cache - uses: actions/cache@v4 - id: mypy-cache - with: - path: .mypy_cache - key: mypy-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('poetry.lock') }} - - name: Set up cache - uses: actions/cache@v4 - id: cache - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('poetry.lock') }} - - name: Ensure cache is healthy - if: steps.cache.outputs.cache-hit == 'true' - run: poetry run pip --version >/dev/null 2>&1 || rm -rf .venv - - name: Install Dependencies - if: ${{ !env.ACT }} - run: poetry install --quiet - - name: Install Dependencies - if: ${{ env.ACT }} - # When using `act` to run the workflow locally, the `poetry install` command - # may fail due to network issues when running multiple Docker containers. - run: poetry install --quiet || poetry install --quiet || poetry install --quiet + + - name: Typecheck + run: mypy + - name: Test - run: poetry run bash scripts/test.sh + run: pytest tests/unit --cov=earthaccess --cov=tests --cov-report=term-missing --capture=no --tb=native --log-cli-level=INFO + - name: Upload coverage # Don't upload coverage when using the `act` tool to run the workflow locally if: ${{ !env.ACT }} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0832d588..aaa70b69 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -33,6 +33,12 @@ repos: - id: ruff args: ["--fix", "--exit-non-zero-on-fix"] - id: ruff-format + + - repo: https://github.com/astral-sh/uv-pre-commit + rev: "0.4.7" + hooks: + - id: uv-lock + - repo: https://github.com/google/yamlfmt rev: v0.13.0 hooks: diff --git a/Makefile b/Makefile deleted file mode 100644 index d8299399..00000000 --- a/Makefile +++ /dev/null @@ -1,48 +0,0 @@ -.PHONY: help - -# Shell that make should use -SHELL:=bash - -# Capture git branch and hash information -# https://stackoverflow.com/questions/43008842/capture-git-branch-name-in-makefile-variable -BRANCH := $(shell git rev-parse --abbrev-ref HEAD) -HASH := $(shell git rev-parse HEAD) - -# - to suppress if it doesn't exist --include make.env - -help: -# http://marmelab.com/blog/2016/02/29/auto-documented-makefile.html -# adds anything that has a double # comment to the phony help list - @grep -E '^[0-9a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | awk 'BEGIN {FS = ".:*?## "}; {printf "\033[36m%-30s\033[0m %s\n", $$1, $$2}' - -python-three-eight: ## setup python3.8 virtual environment using poetry - poetry env use python3.8 - PIP_REQUIRE_VENV=0 poetry install - -python-three-nine: ## setup python3.9 virtual environment using poetry - poetry env use python3.9 - PIP_REQUIRE_VENV=0 poetry install - -python-three-ten: ## setup python3.10 virtual environment using poetry - poetry env use python3.10 - PIP_REQUIRE_VENV=0 poetry install - -pre-commit: ## setup pre-commit within poetry - poetry run pre-commit install - -lint: ## lint the code - bash scripts/lint.sh - -format: ## format the code - bash scripts/format.sh - -test: ## lint the code - bash scripts/test.sh - -docs-live: ## make live docs - bash scripts/docs-live.sh - -install: ## uninstall and install package with python - poetry remove ./earthaccess - poetry add ./earthaccess diff --git a/README.md b/README.md index 1cad47f3..2e810078 100644 --- a/README.md +++ b/README.md @@ -82,7 +82,7 @@ Visit [our quick start guide](https://earthaccess.readthedocs.io/en/latest/quick ## Compatibility -Only **Python 3.8+** is supported. +The _minimum_ supported Python version is **3.9**. ## How to Contribute to `earthaccess` diff --git a/binder/environment.yml b/binder/environment.yml index 2bc59969..95c0496b 100644 --- a/binder/environment.yml +++ b/binder/environment.yml @@ -18,3 +18,7 @@ dependencies: - hvplot - holoviews - panel + + - pip + - pip: + - "." diff --git a/binder/postBuild b/binder/postBuild deleted file mode 100755 index bcf7589f..00000000 --- a/binder/postBuild +++ /dev/null @@ -1,6 +0,0 @@ -#!/bin/bash -# -set -ex - -poetry config virtualenvs.create false -poetry install --no-dev diff --git a/ci/environment-dev.yml b/ci/environment-dev.yml deleted file mode 100644 index 60ebcac8..00000000 --- a/ci/environment-dev.yml +++ /dev/null @@ -1,26 +0,0 @@ -name: earthaccess-dev -channels: - - conda-forge -dependencies: - # This environment bootstraps poetry, the actual dev environment - # is installed and managed with poetry - - python=3.10 - - jupyterlab=3 - - xarray>=0.19 - - ipyleaflet>=0.13 - - h5netcdf>=0.11 - - cartopy - - - mkdocs>=1.2 - - mkdocs-material>=7.1,<9.0 - - markdown-include>=0.6 - - mkdocs-redirects>=1.2.1 - - mkdocstrings>=0.19.0 - - mkdocstrings-python - - mkdocs-jupyter>=0.19.0 - - pymdown-extensions>=9.2 - - - pip - - pip: - - poetry - - markdown-callouts>=0.2.0 diff --git a/ci/environment-mindeps.yaml b/ci/environment-mindeps.yaml deleted file mode 100644 index 76f81434..00000000 --- a/ci/environment-mindeps.yaml +++ /dev/null @@ -1,29 +0,0 @@ -# NOTE: Minimum dependencies are defined in `pyproject.toml`. -# This file is only used for testing purposes. -# When making changes to minimum dependencies, make sure both this file -# and `pyproject.toml` are consistent with each other. -name: test-environment -channels: - - conda-forge -dependencies: - # required dependencies - - python=3.9 - - python-cmr=0.10.0 - - pqdm=0.1 - - requests=2.26 - - s3fs=2022.11 - - fsspec=2022.11 - - tinynetrc=1.3.1 - - multimethod=1.8 - - importlib-resources=6.3.2 - - typing-extensions=4.10.0 - # test dependencies - - responses - - pytest - - pytest-cov - - python-magic - - mypy - - types-requests - - types-setuptools - - ruff - - vcrpy diff --git a/docs/contributing/development.md b/docs/contributing/development.md index 0350329f..52e4b676 100644 --- a/docs/contributing/development.md +++ b/docs/contributing/development.md @@ -1,62 +1,67 @@ -# Development environment setup +# Development + +## Getting the code 1. Fork [nsidc/earthaccess](https://github.com/nsidc/earthaccess) 1. Clone your fork (`git clone git@github.com:{my-username}/earthaccess`) -`earthaccess` uses Poetry to build and publish the package to PyPI, the defacto Python repository. In order to develop new features or fix bugs etc. we need to set up a virtual environment and install the library locally. We can accomplish this with Conda and Poetry, or just with Poetry. Both workflows achieve the same result. +In order to develop new features or fix bugs etc. we need to set up a virtual +environment and install the library locally. -### Using Conda +## Quickstart development -If we have `mamba` (or `conda`) installed, we can use the environment file included in the `ci` folder. This will install all the libraries we need (including Poetry) to start developing `earthaccess`: +The fastest way to start with development is to use nox. If you don't have nox, +you can use `pipx run nox` to run it without installing, or `pipx install nox`. +If you don't have pipx (pip for applications), then you can install with +`pip install pipx` (the only case were installing an application with regular +pip is reasonable). If you use macOS, then pipx and nox are both in brew, use +`brew install pipx nox`. -```bash -mamba env update -f ci/environment-dev.yml -mamba activate earthaccess-dev -poetry install +To use, run `nox`. This will typecheck and test using every installed version of +Python on your system, skipping ones that are not installed. You can also run +specific jobs: + +```console +$ nox -s typecheck # Typecheck only +$ nox -s tests # Python tests +$ nox -s build_docs -- --serve # Build and serve the docs +$ nox -s build_pkg # Make an SDist and wheel ``` -After activating our environment and installing the library with Poetry we can run Jupyter lab and start testing the local distribution or we can use `make` to run the tests and lint the code. -Now we can create a feature branch and push those changes to our fork! +Nox handles everything for you, including setting up a temporary virtual +environment for each run. + +## Manual development environment setup -### Using Poetry +While `nox` is the fastest way to get started, you may soon find that you need a full +development environment, for example to test in a REPL. This development environment +also includes `nox`. -If we want to use Poetry, first we need to [install it](https://python-poetry.org/docs/#installation). After installing Poetry we can use the same workflow we used for Conda, first we install the library locally: +Create and activate a virtual environment with `venv`, which comes by default with +Python, in the `.venv` directory: ```bash -poetry install +python -m venv .venv +source .venv/bin/activate ``` -and now we can run the local Jupyter Lab and run the scripts etc. using Poetry: +Install _earthaccess_ in editable mode with optional development dependencies: ```bash -poetry run jupyter lab +pip install --editable .[dev,test,docs] ``` -!!! note - - You may need to use `poetry run make ...` to run commands in the environment. - -### Managing Dependencies - -If you need to add a new dependency, you should do the following: +??? note "For conda users" -- Run `poetry add ` for a required (non-development) dependency -- Run `poetry add --group=dev ` for a development dependency, such - as a testing or code analysis dependency + For your convenience, there is a `environment.yml` file at the root of this + repository. You can create a dev environment quickly with: -Both commands add an entry to `pyproject.toml` with a version that is -compatible with the rest of the dependencies. However, `poetry` pins versions -with a caret (`^`), which is not what we want. Therefore, you must locate the -new entry in `pyproject.toml` and change the `^` to `>=`. (See -[poetry-relax](https://github.com/zanieb/poetry-relax) for the reasoning behind -this.) + ```bash + conda env create --file environment.yml + ``` -In addition, you must also add a corresponding entry to -`ci/environment-mindeps.yaml`. You'll notice in this file that required -dependencies should be pinned exactly to the versions specified in -`pyproject.toml` (after changing `^` to `>=` there), and that development -dependencies should be left unpinned. +## Managing Dependencies -Finally, for _development dependencies only_, you must add an entry to -`ci/environment-dev.yaml` with the same version constraint as in -`pyproject.toml`. +If you need to add a new dependency, edit `pyproject.toml` and insert the dependency in +the correct location (either in the `dependencies` array or +`[project.optional-dependencies]`. diff --git a/docs/contributing/index.md b/docs/contributing/index.md index a8b9f624..081da2df 100644 --- a/docs/contributing/index.md +++ b/docs/contributing/index.md @@ -10,11 +10,13 @@ Please note that we have a [code of conduct](./code-of-conduct.md). Please follo ## First Steps to contribute -- Read the documentation! -- Fork this repo and set up development environment (see - [development environment documentation](./development.md) for details) -- Run the unit tests successfully in `main` branch: - - `make test` +First, read the documentation! + +When you feel comfortable, fork this repository and set up your development environment. +Don't forget to run our suite of checks (see [development environment +documentation](./development.md) for details)! + +## Sharing your work with us on GitHub From here, you might want to fix and issue or bug, or add a new feature. Jump to the relevant section to proceed. diff --git a/docs/contributing/maintainers-guide.md b/docs/contributing/maintainers-guide.md index 2d54a354..bfbbbf47 100644 --- a/docs/contributing/maintainers-guide.md +++ b/docs/contributing/maintainers-guide.md @@ -44,11 +44,8 @@ main: This is the main branch, which is consistently tested and prepared for rel ## Continuous Integration & Delivery -The GitHub Actions CI services handle the project's building, testing, and management across Linux, macOS, and Windows platforms. The CI configuration files can be found in the `./.github/workflows/`. Here we briefly summarize the functions of the files in the `./ci/` directory. +The GitHub Actions CI services handle the project's building, testing, and management across Linux, macOS, and Windows platforms. The CI configuration files can be found in the `./.github/workflows/`. -`environment-dev.yml` - The environment configuration file specifies dependencies for Python development. - -`environment-mindeps.yaml`- Specifies an environment with the minimum supported dependency versions to detect backwards-incompatible code. ## Continuous Documentation diff --git a/environment.yml b/environment.yml new file mode 100644 index 00000000..a7a5dd01 --- /dev/null +++ b/environment.yml @@ -0,0 +1,11 @@ +name: earthaccess-dev +channels: + - conda-forge +dependencies: + # This environment bootstraps pip, the actual dev environment + # is installed and managed with pip + - python=3.10 + + - pip + - pip: + - --editable .[dev,test,docs] diff --git a/noxfile.py b/noxfile.py new file mode 100644 index 00000000..cadc109d --- /dev/null +++ b/noxfile.py @@ -0,0 +1,37 @@ +from __future__ import annotations + +import shutil +from pathlib import Path + +import nox + +DIR = Path(__file__).parent.resolve() + +nox.needs_version = ">=2024.3.2" +nox.options.sessions = ["typecheck", "test_unit"] +nox.options.default_venv_backend = "uv|virtualenv" + + +@nox.session +def typecheck(session: nox.Session) -> None: + """Typecheck with mypy.""" + session.install("--editable", ".[test]") + session.run("mypy") + + +@nox.session +def test_unit(session: nox.Session) -> None: + """Run the unit tests.""" + session.install("--editable", ".[test]") + session.run("pytest", "tests/unit", *session.posargs) + + +@nox.session +def build_pkg(session: nox.Session) -> None: + """Build a source distribution and binary distribution (wheel).""" + build_path = DIR.joinpath("build") + if build_path.exists(): + shutil.rmtree(build_path) + + session.install("build") + session.run("python", "-m", "build") diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 0935fff0..00000000 --- a/poetry.lock +++ /dev/null @@ -1,5270 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - 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-[package.dependencies] -idna = ">=2.0" -multidict = ">=4.0" - -[[package]] -name = "zarr" -version = "2.18.2" -description = "An implementation of chunked, compressed, N-dimensional arrays for Python" -optional = true -python-versions = ">=3.9" -files = [ - {file = "zarr-2.18.2-py3-none-any.whl", hash = "sha256:a638754902f97efa99b406083fdc807a0e2ccf12a949117389d2a4ba9b05df38"}, - {file = "zarr-2.18.2.tar.gz", hash = "sha256:9bb393b8a0a38fb121dbb913b047d75db28de9890f6d644a217a73cf4ae74f47"}, -] - -[package.dependencies] -asciitree = "*" -fasteners = {version = "*", markers = "sys_platform != \"emscripten\""} -numcodecs = ">=0.10.0" -numpy = ">=1.23" - -[package.extras] -docs = ["numcodecs[msgpack]", "numpydoc", "pydata-sphinx-theme", "sphinx", "sphinx-automodapi", "sphinx-copybutton", "sphinx-design", "sphinx-issues"] -jupyter = ["ipytree (>=0.2.2)", "ipywidgets (>=8.0.0)", "notebook"] - -[[package]] -name = "zipp" -version = "3.19.2" -description = "Backport of pathlib-compatible object wrapper for zip files" -optional = false -python-versions = ">=3.8" -files = [ - 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"Luis Lopez ", - "Joseph H. Kennedy ", - "James Bourbeau ", - "Matt Fisher ", - "Chuck Daniels " + {name = "Luis Lopez", email = "betolin@gmail.com"}, + {name = "Joseph H. Kennedy", email = "jhkennedy@alaska.edu"}, + {name = "James Bourbeau", email = "james@coiled.io"}, + {name = "Matt Fisher", email = "mfisher87@gmail.com"}, + {name = "Chuck Daniels", email = "chuck@developmentseed.org"}, ] license = "MIT" readme = "README.md" @@ -31,86 +37,88 @@ classifiers = [ "License :: OSI Approved :: MIT License", ] -# NOTE: Minimum dependencies are tested with the packages defined in the -# `ci/environment-mindeps.yaml` conda environment. When updating minimum dependencies -# here, make sure to also update `ci/environment-mindeps.yaml`. -[tool.poetry.dependencies] -python = ">=3.9,<4.0" -python-cmr = ">=0.10.0" -pqdm = ">=0.1" -requests = ">=2.26" -s3fs = ">=2022.11" -fsspec = ">=2022.11" -tinynetrc = "^1.3.1" -multimethod = ">=1.8" -kerchunk = { version = ">=0.1.2", optional = true } -# kerchunk requires numpy, but numpy >=1.26.0 is required for Python 3.12 support -numpy = [ - { version = ">=1.24.0", optional = true, python = "<3.12" }, - { version = ">=1.26.0", optional = true, python = ">=3.12" } +requires-python = ">=3.9" + +dependencies = [ + "python-cmr >=0.10.0", + "pqdm >=0.1", + "requests >=2.26", + "s3fs >=2022.11", + "fsspec >=2022.11", + "tinynetrc >=1.3.1", + "multimethod >=1.8", + "importlib-resources >=6.3.2", + "typing_extensions >=4.10.0", + # kerchunk requires numpy, but numpy >=1.26.0 is required for Python 3.12 + # support + "numpy >=1.24.0; python_version < '3.12'", + "numpy >=1.26.0; python_version >= '3.12'", +] + +[project.optional-dependencies] +kerchunk = [ + "kerchunk", + "dask", +] +dev = [ + "bump-my-version >=0.10.0", + "nox", + "pre-commit >=2.4", + "ruff >=0.6.3", + "uv >=0.4.7", ] -dask = { version = ">=2022.1.0", optional = true } -importlib-resources = ">=6.3.2" -typing_extensions = ">=4.10.0" - -[tool.poetry.extras] -kerchunk = ["kerchunk", "dask"] - -[tool.poetry.group.dev.dependencies] -python-magic = ">=0.4" -mypy = ">=0.812" -jupyterlab = ">=3" -pre-commit = ">=2.4" -pytest = ">=6.0" -pytest-cov = ">=2.8" -pytest-watch = ">=4.2" -# Prevent install of 1.6.0 because the module mkdocs.tests -# is no longer exported, which causes mkdocs-jupyter to -# break with a ModuleNotFoundError. -mkdocs = ">=1.2,!=1.6.0" -mkdocs-material = ">=7.1,<10.0" -mkdocs-redirects = ">=1.2.1" -markdown-callouts = ">=0.2.0" -markdown-include = ">=0.6" -mkdocstrings = {extras = ["python"], version = ">=0.19.0"} -mkdocs-jupyter = ">=0.19.0" -pymdown-extensions = ">=9.2" -pygments = ">=2.11.1" -responses = ">=0.14" -ruff = ">=0.4.2" -types-requests = ">=0.1" -types-setuptools = ">=0.1" -ipywidgets = ">=7.7.0" -widgetsnbextension = ">=3.6.0" -# for notebook integrations and documentation examples -xarray = ">=2023.01" -matplotlib = ">=3.3" -h5netcdf = ">=0.11" -pyproj = [ - { version = ">=3.5.0", python = "<3.12" }, - { version = ">=3.6.1", python = ">=3.12" } +test = [ + "mypy >=1.11.2", + "pytest >=8.3", + "pytest-cov >=5.0", + "pytest-watch >=4.2", + "python-magic >=0.4", + "responses >=0.14", + "types-requests >=0.1", + "types-setuptools >=0.1", + "vcrpy >=6.0.1", +] +docs = [ + "jupyterlab >=3", + "ipywidgets >=7.7.0", + "widgetsnbextension >=3.6.0", + # Prevent install of 1.6.0 because the module mkdocs.tests + # is no longer exported, which causes mkdocs-jupyter to + # break with a ModuleNotFoundError. + # for notebook integrations and documentation examples + "mkdocs >=1.2,!=1.6.0", + "mkdocs-material >=7.1,<10.0", + "mkdocs-redirects >=1.2.1", + "markdown-callouts >=0.2.0", + "markdown-include >=0.6", + "mkdocs-jupyter >=0.19.0", + "mkdocstrings[python] >=0.19.0", + "pymdown-extensions >=9.2", + "pygments >=2.11.1", + "xarray >=2023.01", + "matplotlib >=3.3", + "h5netcdf >=0.11", + "pyproj >=3.5.0; python_version < '3.12'", + "pyproj >=3.6.1; python_version >= '3.12'", + # The following error occurs when building the docs, so we must explicitly + # include lxml-html-clean as a dev dependency until mkdocs-jupyter is updated: + # + # ImportError: lxml.html.clean module is now a separate project lxml_html_clean. + # Install lxml[html_clean] or lxml_html_clean directly. + # + # See https://github.com/danielfrg/mkdocs-jupyter/issues/200 + # See https://github.com/danielfrg/mkdocs-jupyter/issues/197 + "lxml-html-clean >=0.1.1", ] -bump-my-version = ">=0.10.0" -vcrpy = ">=6.0.1" -# The following error occurs when building the docs, so we must explicitly -# include lxml-html-clean as a dev dependency until mkdocs-jupyter is updated: -# -# ImportError: lxml.html.clean module is now a separate project lxml_html_clean. -# Install lxml[html_clean] or lxml_html_clean directly. -# -# See https://github.com/danielfrg/mkdocs-jupyter/issues/200 -# See https://github.com/danielfrg/mkdocs-jupyter/issues/197 -lxml-html-clean = ">=0.1.1" -[build-system] -requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" [tool.pytest] filterwarnings = ["error::UserWarning"] [tool.mypy] -files = ["earthaccess", "tests", "stubs"] +python_version = "3.9" +files = ["earthaccess", "tests"] +mypy_path = ["earthaccess", "tests", "stubs"] disallow_untyped_defs = true # TODO: incrementally work towards strict mode (currently too many errors) # strict = true @@ -183,5 +191,5 @@ search = 'date-released: "\d{{4}}-\d{{2}}-\d{{2}}"' replace = 'date-released: "{now:%Y-%m-%d}"' [tool.codespell] -skip = 'poetry.lock,*.ipynb,*.yml,*.yaml,./tests' +skip = 'uv.lock,*.ipynb,*.yml,*.yaml,./tests' ignore-words = ".codespellignore" diff --git a/readthedocs.yml b/readthedocs.yml index 86d9a434..5e44b0d9 100644 --- a/readthedocs.yml +++ b/readthedocs.yml @@ -10,24 +10,12 @@ build: os: ubuntu-22.04 tools: python: "3.10" - jobs: - post_create_environment: - # Install poetry - - asdf plugin add poetry - # HACK: As of ~2024-05-07, poetry "latest" is not installable with - # asdf ("Version 1.8.3 does not exist") because the latest tagged version - # of poetry is not yet released. Should we avoid using "latest" from here - # on, or change it back once 1.8.3 is released? - - asdf install poetry 1.8.2 - - asdf global poetry 1.8.2 - # Tell poetry to not use a virtual environment - - poetry config virtualenvs.create false - post_install: - # Install dependencies with 'docs' dependency group - # https://python-poetry.org/docs/managing-dependencies/#dependency-groups - - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install - - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry env info - - pip freeze mkdocs: configuration: mkdocs.yml + +python: + install: + - path: "." + extra_requirements: + - docs diff --git a/scripts/integration-test.sh b/scripts/integration-test.sh index 7a7b6551..15b173f8 100755 --- a/scripts/integration-test.sh +++ b/scripts/integration-test.sh @@ -14,5 +14,3 @@ if [[ $RET == 99 ]]; then elif [[ $RET != 0 ]]; then exit $RET fi - -bash ./scripts/lint.sh diff --git a/scripts/lint.sh b/scripts/lint.sh deleted file mode 100755 index e6caef1d..00000000 --- a/scripts/lint.sh +++ /dev/null @@ -1,6 +0,0 @@ -#!/usr/bin/env bash - -set -ex - -mypy -ruff check . diff --git a/scripts/publish.sh b/scripts/publish.sh deleted file mode 100755 index aa459c10..00000000 --- a/scripts/publish.sh +++ /dev/null @@ -1,7 +0,0 @@ -#!/usr/bin/env bash - -set -e - -# https://python-poetry.org/docs/libraries/ -# https://python-poetry.org/docs/cli/#publish -poetry publish --build diff --git a/scripts/test.sh b/scripts/test.sh deleted file mode 100755 index b8709814..00000000 --- a/scripts/test.sh +++ /dev/null @@ -1,7 +0,0 @@ -#!/usr/bin/env bash - -set -e -set -x - -pytest tests/unit --cov=earthaccess --cov=tests --cov-report=term-missing "${@}" -s --tb=native --log-cli-level=INFO -bash ./scripts/lint.sh diff --git a/uv.lock b/uv.lock new file mode 100644 index 00000000..e4c8a627 --- /dev/null +++ b/uv.lock @@ -0,0 +1,4274 @@ +version = 1 +requires-python = ">=3.9" +resolution-markers = [ + "python_full_version < '3.10' and 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