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C++ core libraries and headers should be installed by minimal installation of sci-biology/micromanager-9999 #25

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omsai opened this issue Sep 20, 2014 · 0 comments
Open

C++ core libraries and headers should be installed by minimal installation of sci-biology/micromanager-9999 #25

omsai opened this issue Sep 20, 2014 · 0 comments

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@omsai
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omsai commented Sep 20, 2014

A minimal installation should include all C++ libraries and headers to build a C++ application using Micro-Manager:

# USE="-X" emerge -pv micro-manager
[ebuild   R   ] sci-biology/micro-manager-9999  USE="-X -andor -andorsdk3 -doc -java -python" PYTHON_TARGETS="python2_7 python3_3 (-python3_2)"

However, only the DeviceAdapter libraries and demo configuration file are installed. The core libraries and header files are all missing.

# qlist micro-manager
/usr/lib/micro-manager/libmmgr_dal_USBManager.so.0
/usr/lib/micro-manager/libmmgr_dal_nPoint.la
/usr/lib/micro-manager/libmmgr_dal_MicroPoint.la
/usr/lib/micro-manager/libmmgr_dal_Xcite.la
/usr/lib/micro-manager/libmmgr_dal_Prior.la
/usr/lib/micro-manager/libmmgr_dal_Utilities.la
/usr/lib/micro-manager/libmmgr_dal_Aquinas.so.0
/usr/lib/micro-manager/libmmgr_dal_K8061.la
/usr/lib/micro-manager/libmmgr_dal_PIGCS.la
/usr/lib/micro-manager/libmmgr_dal_Ludl.so.0
/usr/lib/micro-manager/libmmgr_dal_Aquinas.la
/usr/lib/micro-manager/libmmgr_dal_ASIFW1000.so.0
/usr/lib/micro-manager/libmmgr_dal_K8055.so.0
/usr/lib/micro-manager/libmmgr_dal_Corvus.la
/usr/lib/micro-manager/libmmgr_dal_PIGCS2.la
/usr/lib/micro-manager/libmmgr_dal_PI.la
/usr/lib/micro-manager/libmmgr_dal_MP285.so.0
/usr/lib/micro-manager/libmmgr_dal_MoticUCam.la
/usr/lib/micro-manager/libmmgr_dal_NikonTE2000.so.0
/usr/lib/micro-manager/libmmgr_dal_SutterLambda.so.0
/usr/lib/micro-manager/libmmgr_dal_ASIWPTR.so.0
/usr/lib/micro-manager/libmmgr_dal_Tofra.la
/usr/lib/micro-manager/libmmgr_dal_SutterStage.la
/usr/lib/micro-manager/libmmgr_dal_Zaber.so.0
/usr/lib/micro-manager/libmmgr_dal_Arduino.so.0
/usr/lib/micro-manager/libmmgr_dal_SimpleAutofocus.la
/usr/lib/micro-manager/libmmgr_dal_LudlLow.so.0
/usr/lib/micro-manager/libmmgr_dal_pgFocus.so.0
/usr/lib/micro-manager/libmmgr_dal_Aladdin.so.0
/usr/lib/micro-manager/libmmgr_dal_LeicaDMR.so.0
/usr/lib/micro-manager/libmmgr_dal_PIGCS2.so.0
/usr/lib/micro-manager/libmmgr_dal_CSU22.so.0
/usr/lib/micro-manager/libmmgr_dal_CARVII.so.0
/usr/lib/micro-manager/libmmgr_dal_VersaLase.so.0
/usr/lib/micro-manager/libmmgr_dal_Aladdin.la
/usr/lib/micro-manager/libmmgr_dal_ASIFW1000.la
/usr/lib/micro-manager/libmmgr_dal_MicroPoint.so.0
/usr/lib/micro-manager/libmmgr_dal_MarzhauserLStep.la
/usr/lib/micro-manager/libmmgr_dal_ZeissCAN.so.0
/usr/lib/micro-manager/libmmgr_dal_Sapphire.so.0
/usr/lib/micro-manager/libmmgr_dal_OpenCVgrabber.la
/usr/lib/micro-manager/libmmgr_dal_PrecisExcite.so.0
/usr/lib/micro-manager/libmmgr_dal_SerialManager.la
/usr/lib/micro-manager/libmmgr_dal_NewportSMC.so.0
/usr/lib/micro-manager/libmmgr_dal_Sapphire.la
/usr/lib/micro-manager/libmmgr_dal_ZeissCAN.la
/usr/lib/micro-manager/libmmgr_dal_PrecisExcite.la
/usr/lib/micro-manager/libmmgr_dal_CSUX.so.0
/usr/lib/micro-manager/libmmgr_dal_ThorlabsFilterWheel.so.0
/usr/lib/micro-manager/libmmgr_dal_NewportCONEX.la
/usr/lib/micro-manager/libmmgr_dal_Cobolt.so.0
/usr/lib/micro-manager/libmmgr_dal_Pecon.la
/usr/lib/micro-manager/libmmgr_dal_SutterStage.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV40_1.la
/usr/lib/micro-manager/libmmgr_dal_PriorLegacy.so.0
/usr/lib/micro-manager/libmmgr_dal_Pecon.so.0
/usr/lib/micro-manager/libmmgr_dal_LumencorSpectra.so.0
/usr/lib/micro-manager/libmmgr_dal_PI.so.0
/usr/lib/micro-manager/libmmgr_dal_LeicaDMI.la
/usr/lib/micro-manager/libmmgr_dal_LeicaDMSTC.so.0
/usr/lib/micro-manager/libmmgr_dal_K8055.la
/usr/lib/micro-manager/libmmgr_dal_Omicron.la
/usr/lib/micro-manager/libmmgr_dal_CoherentOBIS.la
/usr/lib/micro-manager/libmmgr_dal_FocalPoint.so.0
/usr/lib/micro-manager/libmmgr_dal_Scientifica.la
/usr/lib/micro-manager/libmmgr_dal_Neos.la
/usr/lib/micro-manager/libmmgr_dal_CoherentOBIS.so.0
/usr/lib/micro-manager/libmmgr_dal_ASIStage.la
/usr/lib/micro-manager/libmmgr_dal_Oxxius.la
/usr/lib/micro-manager/libmmgr_dal_XCiteLed.so.0
/usr/lib/micro-manager/libmmgr_dal_video4linux2.so.0
/usr/lib/micro-manager/libmmgr_dal_SpectralLMM5.so.0
/usr/lib/micro-manager/libmmgr_dal_PriorLegacy.la
/usr/lib/micro-manager/libmmgr_dal_CoherentCube.la
/usr/lib/micro-manager/libmmgr_dal_SerialManager.so.0
/usr/lib/micro-manager/libmmgr_dal_ThorlabsFilterWheel.la
/usr/lib/micro-manager/libmmgr_dal_Vincent.la
/usr/lib/micro-manager/libmmgr_dal_Vincent.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV120_1.la
/usr/lib/micro-manager/libmmgr_dal_Omicron.so.0
/usr/lib/micro-manager/libmmgr_dal_ThorLabsSC10.so.0
/usr/lib/micro-manager/libmmgr_dal_KDV.so.0
/usr/lib/micro-manager/libmmgr_dal_ThorlabsDCxxxx.la
/usr/lib/micro-manager/libmmgr_dal_Scientifica.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV120_1.so.0
/usr/lib/micro-manager/libmmgr_dal_LumencorSpectra.la
/usr/lib/micro-manager/libmmgr_dal_video4linux2.la
/usr/lib/micro-manager/libmmgr_dal_MP285.la
/usr/lib/micro-manager/libmmgr_dal_Marzhauser.la
/usr/lib/micro-manager/libmmgr_dal_Stradus.so.0
/usr/lib/micro-manager/libmmgr_dal_Nikon.so.0
/usr/lib/micro-manager/libmmgr_dal_CARVII.la
/usr/lib/micro-manager/libmmgr_dal_GPhoto.la
/usr/lib/micro-manager/libmmgr_dal_CSU22.la
/usr/lib/micro-manager/libmmgr_dal_VersaLase.la
/usr/lib/micro-manager/libmmgr_dal_IIDC.so.0
/usr/lib/micro-manager/libmmgr_dal_NewportCONEX.so.0
/usr/lib/micro-manager/libmmgr_dal_ImageProcessorChain.la
/usr/lib/micro-manager/libmmgr_dal_Oxxius.so.0
/usr/lib/micro-manager/libmmgr_dal_K8061.so.0
/usr/lib/micro-manager/libmmgr_dal_LudlLow.la
/usr/lib/micro-manager/libmmgr_dal_ZeissCAN29.la
/usr/lib/micro-manager/libmmgr_dal_MaestroServo.la
/usr/lib/micro-manager/libmmgr_dal_MarzhauserLStep.so.0
/usr/lib/micro-manager/libmmgr_dal_SpectralLMM5.la
/usr/lib/micro-manager/libmmgr_dal_IIDC.la
/usr/lib/micro-manager/libmmgr_dal_Utilities.so.0
/usr/lib/micro-manager/libmmgr_dal_Cobolt.la
/usr/lib/micro-manager/libmmgr_dal_ThorLabs.so.0
/usr/lib/micro-manager/libmmgr_dal_DemoCamera.so.0
/usr/lib/micro-manager/libmmgr_dal_ZeissCAN29.so.0
/usr/lib/micro-manager/libmmgr_dal_Marzhauser.so.0
/usr/lib/micro-manager/libmmgr_dal_PIGCS.so.0
/usr/lib/micro-manager/libmmgr_dal_Ludl.la
/usr/lib/micro-manager/libmmgr_dal_Prior.so.0
/usr/lib/micro-manager/libmmgr_dal_ASITiger.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_30DV50.la
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_30DV50.so.0
/usr/lib/micro-manager/libmmgr_dal_dc1394.la
/usr/lib/micro-manager/libmmgr_dal_MaestroServo.so.0
/usr/lib/micro-manager/libmmgr_dal_Neos.so.0
/usr/lib/micro-manager/libmmgr_dal_Zaber.la
/usr/lib/micro-manager/libmmgr_dal_ImageProcessorChain.so.0
/usr/lib/micro-manager/libmmgr_dal_XCite120PCExacte.so.0
/usr/lib/micro-manager/libmmgr_dal_Conix.la
/usr/lib/micro-manager/libmmgr_dal_ThorLabs.la
/usr/lib/micro-manager/libmmgr_dal_CSUW1.la
/usr/lib/micro-manager/libmmgr_dal_XCite120PCExacte.la
/usr/lib/micro-manager/libmmgr_dal_GPhoto.so.0
/usr/lib/micro-manager/libmmgr_dal_CSUX.la
/usr/lib/micro-manager/libmmgr_dal_XLight.la
/usr/lib/micro-manager/libmmgr_dal_DemoCamera.la
/usr/lib/micro-manager/libmmgr_dal_MoticUCam.so.0
/usr/lib/micro-manager/libmmgr_dal_OpenCVgrabber.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV40_3.so.0
/usr/lib/micro-manager/libmmgr_dal_Arduino.la
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_dDrive.la
/usr/lib/micro-manager/libmmgr_dal_VariLC.la
/usr/lib/micro-manager/libmmgr_dal_UserDefinedSerial.so.0
/usr/lib/micro-manager/libmmgr_dal_LeicaDMSTC.la
/usr/lib/micro-manager/libmmgr_dal_Nikon.la
/usr/lib/micro-manager/libmmgr_dal_SimpleAutofocus.so.0
/usr/lib/micro-manager/libmmgr_dal_dc1394.so.0
/usr/lib/micro-manager/libmmgr_dal_ThorlabsDCxxxx.so.0
/usr/lib/micro-manager/libmmgr_dal_USBManager.la
/usr/lib/micro-manager/libmmgr_dal_ThorLabsSC10.la
/usr/lib/micro-manager/libmmgr_dal_Stradus.la
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV40_1.so.0
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_dDrive.so.0
/usr/lib/micro-manager/libmmgr_dal_NikonTE2000.la
/usr/lib/micro-manager/libmmgr_dal_SutterLambda.la
/usr/lib/micro-manager/libmmgr_dal_CSUW1.so.0
/usr/lib/micro-manager/libmmgr_dal_FreeSerialPort.la
/usr/lib/micro-manager/libmmgr_dal_XCiteLed.la
/usr/lib/micro-manager/libmmgr_dal_pgFocus.la
/usr/lib/micro-manager/libmmgr_dal_Conix.so.0
/usr/lib/micro-manager/libmmgr_dal_NewportSMC.la
/usr/lib/micro-manager/libmmgr_dal_VariLC.so.0
/usr/lib/micro-manager/libmmgr_dal_LeicaDMI.so.0
/usr/lib/micro-manager/libmmgr_dal_Xcite.so.0
/usr/lib/micro-manager/libmmgr_dal_ASIWPTR.la
/usr/lib/micro-manager/libmmgr_dal_Corvus.so.0
/usr/lib/micro-manager/libmmgr_dal_FocalPoint.la
/usr/lib/micro-manager/libmmgr_dal_ASIStage.so.0
/usr/lib/micro-manager/libmmgr_dal_AAAOTF.la
/usr/lib/micro-manager/libmmgr_dal_LeicaDMR.la
/usr/lib/micro-manager/libmmgr_dal_nPoint.so.0
/usr/lib/micro-manager/libmmgr_dal_FreeSerialPort.so.0
/usr/lib/micro-manager/libmmgr_dal_CoherentCube.so.0
/usr/lib/micro-manager/libmmgr_dal_ASITiger.la
/usr/lib/micro-manager/libmmgr_dal_XLight.so.0
/usr/lib/micro-manager/libmmgr_dal_UserDefinedSerial.la
/usr/lib/micro-manager/libmmgr_dal_Piezosystem_NV40_3.la
/usr/lib/micro-manager/libmmgr_dal_AAAOTF.so.0
/usr/lib/micro-manager/libmmgr_dal_KDV.la
/usr/lib/micro-manager/libmmgr_dal_Tofra.so.0
/usr/share/micro-manager/MMConfig_demo.cfg
# emerge --info
Portage 2.2.8-r1 (default/linux/x86/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.12.13-gentoo i686)
=================================================================
System uname: Linux-3.12.13-gentoo-i686-Intel-R-_Core-TM-_i5-4200U_CPU_@_1.60GHz-with-gentoo-2.2
KiB Mem:     2515132 total,    708800 free
KiB Swap:    4456444 total,   4455896 free
Timestamp of tree: Thu, 18 Sep 2014 03:45:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.6, 3.3.3
dev-util/cmake:           2.8.12.2
dev-util/pkgconfig:       0.28-r1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.13.4
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.7.3-r1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2-r1
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo x-microscopy
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA Google-TOS"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="-t -q"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="rsync://mirrors.rit.edu/gentoo/ rsync://mirror.mcs.anl.gov/gentoo/ http://gentoo.osuosl.org/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/microscopy"
SYNC="rsync://rsync.us.gentoo.org/gentoo-portage"
USE="VAAPI X a52 aac acl acpi alsa berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif glamor gpm gtk iconv ipv6 jpeg lcms ldap libnotify mad mng modules mp4 mpeg ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt3support readline sdl session spell ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x86 xcb xml xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="synaptics evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-minimizer nlpsolver scripting-beanshell wiki-publisher" LINGUAS="en_US" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="intel i965" XFCE_PLUGINS="brightness clock" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
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