From 33bc441ab36b53ea1abdef41b3845af7a21c692a Mon Sep 17 00:00:00 2001 From: raphaelgazzotti Date: Tue, 29 Oct 2024 09:28:19 +0100 Subject: [PATCH] Removal of instances. --- instances/UBERONParcellation/CA1Alveus.jsonld | 16 ------ .../CA1FieldOfHippocampus.jsonld | 36 -------------- .../CA1StratumLacunosumMoleculare.jsonld | 19 ------- .../CA1StratumOriens.jsonld | 20 -------- .../CA1StratumRadiatum.jsonld | 19 ------- .../CA2FieldOfHippocampus.jsonld | 14 ------ .../CA2StratumRadiatum.jsonld | 20 -------- instances/UBERONParcellation/CA3Alveus.jsonld | 16 ------ .../CA3FieldOfHippocampus.jsonld | 14 ------ .../CA3StratumRadiatum.jsonld | 20 -------- .../UBERONParcellation/abducensNucleus.jsonld | 14 ------ .../accessoryAbducensNucleus.jsonld | 16 ------ .../accessoryBasalAmygdaloidNucleus.jsonld | 32 ------------ .../accessoryCuneateNucleus.jsonld | 25 ---------- ...soryMedullaryLaminaOfGlobusPallidus.jsonld | 28 ----------- .../accessoryNerveFiberBundle.jsonld | 20 -------- .../accessoryNerveRoot.jsonld | 14 ------ .../UBERONParcellation/adenohypophysis.jsonld | 33 ------------- .../aggregateRegionalPartOfBrain.jsonld | 16 ------ .../alarCentralLobule.jsonld | 14 ------ .../UBERONParcellation/allocortex.jsonld | 21 -------- .../amiculumOfDentateNucleus.jsonld | 19 ------- .../UBERONParcellation/ammonsHorn.jsonld | 26 ---------- instances/UBERONParcellation/amygdala.jsonld | 27 ---------- .../UBERONParcellation/angularGyrus.jsonld | 21 -------- .../UBERONParcellation/annectantGyrus.jsonld | 16 ------ .../ansaLenticularis.jsonld | 19 ------- .../ansiformLobuleCrusI.jsonld | 25 ---------- .../ansiformLobuleCrusII.jsonld | 25 ---------- .../anteriorAmygdaloidArea.jsonld | 22 --------- .../anteriorCalcarineSulcus.jsonld | 14 ------ .../anteriorCingulateCortex.jsonld | 17 ------- .../anteriorCingulateGyrus.jsonld | 23 --------- .../anteriorColumnOfFornix.jsonld | 21 -------- .../anteriorCommissure.jsonld | 14 ------ .../anteriorCommissureAnteriorPart.jsonld | 30 ------------ .../anteriorHornOfLateralVentricle.jsonld | 23 --------- .../anteriorHypothalamicRegion.jsonld | 20 -------- .../anteriorLimbOfInternalCapsule.jsonld | 20 -------- .../anteriorLobeOfCerebellum.jsonld | 14 ------ .../anteriorMedianEminence.jsonld | 17 ------- .../anteriorMedianOculomotorNucleus.jsonld | 24 --------- .../anteriorNuclearGroup.jsonld | 36 -------------- .../anteriorNucleusOfHypothalamus.jsonld | 26 ---------- ...iorNucleusOfHypothalamusCentralPart.jsonld | 23 --------- ...riorNucleusOfHypothalamusDorsalPart.jsonld | 21 -------- ...rNucleusOfHypothalamusPosteriorPart.jsonld | 21 -------- .../anteriorOlfactoryNucleus.jsonld | 14 ------ .../anteriorParietooccipitalSulcus.jsonld | 14 ------ .../anteriorPerforatedSubstance.jsonld | 26 ---------- .../anteriorPretectalNucleus.jsonld | 17 ------- .../anteriorQuadrangularLobule.jsonld | 14 ------ .../anteriorThalamicRadiation.jsonld | 19 ------- .../anteriorTransverseTemporalGyrus.jsonld | 25 ---------- ...dorsalNucleusOfMedialGeniculateBody.jsonld | 20 -------- .../anterodorsalNucleusOfThalamus.jsonld | 30 ------------ .../anteromedialNucleusOfThalamus.jsonld | 27 ---------- .../anteroventralCochlearNucleus.jsonld | 25 ---------- .../anteroventralNucleusOfThalamus.jsonld | 32 ------------ .../anteroventralPreopticNucleus.jsonld | 17 ------- .../UBERONParcellation/arcopallium.jsonld | 21 -------- .../arcuateFasciculus.jsonld | 21 -------- .../arcuateNucleusOfHypothalamus.jsonld | 30 ------------ .../arcuateNucleusOfMedulla.jsonld | 42 ---------------- .../UBERONParcellation/areaPostrema.jsonld | 14 ------ .../areaXOfBasalGanglion.jsonld | 14 ------ .../areaXOfVentralLateralNucleus.jsonld | 27 ---------- .../arthropodOpticLobe.jsonld | 14 ------ .../UBERONParcellation/auditoryCortex.jsonld | 14 ------ .../banksOfSuperiorTemporalSulcus.jsonld | 16 ------ .../UBERONParcellation/barrelCortex.jsonld | 24 --------- .../basalAmygdaloidNucleus.jsonld | 28 ----------- .../UBERONParcellation/basalForebrain.jsonld | 17 ------- .../UBERONParcellation/basalGanglion.jsonld | 14 ------ .../basalNuclearComplex.jsonld | 21 -------- .../basalNucleusOfTelencephalon.jsonld | 36 -------------- .../UBERONParcellation/basalPartOfPons.jsonld | 27 ---------- ...basolateralAmygdaloidNuclearComplex.jsonld | 29 ----------- .../bedNucleusOfStriaTerminalis.jsonld | 30 ------------ .../bloodcerebrospinalFluidBarrier.jsonld | 14 ------ .../bodyOfCaudateNucleus.jsonld | 20 -------- .../bodyOfCorpusCallosum.jsonld | 22 --------- .../UBERONParcellation/bodyOfFornix.jsonld | 22 --------- .../bodyOfLateralVentricle.jsonld | 23 --------- .../brachiumOfInferiorColliculus.jsonld | 26 ---------- .../brachiumOfSuperiorColliculus.jsonld | 24 --------- .../brainBloodVessel.jsonld | 14 ------ .../brainEndothelium.jsonld | 14 ------ .../UBERONParcellation/brainEpendyma.jsonld | 14 ------ .../UBERONParcellation/brainGrayMatter.jsonld | 14 ------ .../brainMarginalZone.jsonld | 14 ------ .../UBERONParcellation/brainMeninx.jsonld | 14 ------ .../UBERONParcellation/brainVentricle.jsonld | 14 ------ .../brainVentriclechoroidPlexus.jsonld | 14 ------ .../brainWhiteMatter.jsonld | 14 ------ instances/UBERONParcellation/brainstem.jsonld | 23 --------- .../UBERONParcellation/calcarineSulcus.jsonld | 14 ------ .../calcifiedStructureOfBrain.jsonld | 14 ------ .../capsuleOfMedialGeniculateBody.jsonld | 18 ------- .../capsuleOfRedNucleus.jsonld | 21 -------- .../caudalAnteriorCingulateCortex.jsonld | 16 ------ .../caudalCentralOculomotorNucleus.jsonld | 21 -------- .../caudalMiddleFrontalGyrus.jsonld | 18 ------- ...caudalPartOfSpinalTrigeminalNucleus.jsonld | 31 ------------ .../caudalPartOfVentralLateralNucleus.jsonld | 25 ---------- ...tralPosterolateralNucleusOfThalamus.jsonld | 29 ----------- .../caudalPontineReticularNucleus.jsonld | 20 -------- .../UBERONParcellation/caudateNucleus.jsonld | 21 -------- .../UBERONParcellation/caudateputamen.jsonld | 23 --------- .../centralAmygdaloidNucleus.jsonld | 27 ---------- ...centralCervicalSpinocerebellarTract.jsonld | 16 ------ .../centralDorsalNucleusOfThalamus.jsonld | 23 --------- .../centralGraySubstanceOfMedulla.jsonld | 21 -------- .../centralGraySubstanceOfMidbrain.jsonld | 42 ---------------- .../centralGraySubstanceOfPons.jsonld | 20 -------- .../centralLateralNucleus.jsonld | 22 --------- .../UBERONParcellation/centralLobule.jsonld | 14 ------ .../centralMedialNucleus.jsonld | 23 --------- .../centralNucleusOfInferiorColliculus.jsonld | 25 ---------- .../centralOculomotorNucleus.jsonld | 21 -------- .../UBERONParcellation/centralSulcus.jsonld | 25 ---------- .../centralTegmentalTractOfMidbrain.jsonld | 18 ------- .../centralTegmentalTractOfPons.jsonld | 17 ------- .../centromedianNucleusOfThalamus.jsonld | 32 ------------ .../cephalopodOpticLobe.jsonld | 14 ------ .../cerebellarCortex.jsonld | 19 ------- .../UBERONParcellation/cerebellarLayer.jsonld | 14 ------ .../cerebellarNuclearComplex.jsonld | 26 ---------- .../UBERONParcellation/cerebellarPlate.jsonld | 14 ------ .../cerebellarVermis.jsonld | 14 ------ .../UBERONParcellation/cerebellum.jsonld | 19 ------- .../cerebellumFissure.jsonld | 14 ------ .../cerebellumGloboseNucleus.jsonld | 27 ---------- .../cerebellumHemisphericLobuleX.jsonld | 14 ------ .../cerebellumIntermediateZone.jsonld | 23 --------- .../cerebellumInterpositusNucleus.jsonld | 22 --------- .../cerebellumMarginalLayer.jsonld | 14 ------ .../cerebellumVasculature.jsonld | 14 ------ .../cerebellumVermisCulmen.jsonld | 14 ------ .../cerebellumVermisLobule.jsonld | 14 ------ .../cerebellumVermisLobuleI.jsonld | 14 ------ .../cerebellumVermisLobuleIX.jsonld | 14 ------ .../cerebellumVermisLobuleX.jsonld | 14 ------ .../cerebralBloodVessel.jsonld | 14 ------ .../UBERONParcellation/cerebralCortex.jsonld | 25 ---------- .../cerebralCortexMarginalLayer.jsonld | 14 ------ .../UBERONParcellation/cerebralCrus.jsonld | 31 ------------ .../cerebralHemisphere.jsonld | 22 --------- .../cerebralHemisphereWhiteMatter.jsonld | 21 -------- .../cerebralPeduncle.jsonld | 24 --------- .../cerebralSubcortex.jsonld | 14 ------ .../cerebrospinalFluid.jsonld | 19 ------- .../chemoarchitecturalPartOfBrain.jsonld | 16 ------ .../chemoarchitecturalPartOfStriatum.jsonld | 14 ------ .../UBERONParcellation/choroidPlexus.jsonld | 21 -------- .../choroidPlexusCorporaArenacea.jsonld | 14 ------ .../choroidPlexusEpithelium.jsonld | 14 ------ .../choroidPlexusOfFourthVentricle.jsonld | 21 -------- .../choroidPlexusOfLateralVentricle.jsonld | 20 -------- .../choroidPlexusOfThirdVentricle.jsonld | 22 --------- .../choroidPlexusStroma.jsonld | 14 ------ .../UBERONParcellation/cingulateCortex.jsonld | 18 ------- .../UBERONParcellation/cingulateGyrus.jsonld | 22 --------- .../UBERONParcellation/cingulateSulcus.jsonld | 14 ------ .../UBERONParcellation/cingulumOfBrain.jsonld | 14 ------ .../circularSulcusOfInsula.jsonld | 14 ------ .../circumventricularOrgan.jsonld | 18 ------- .../claustralAmygdaloidArea.jsonld | 21 -------- .../claustrumOfBrain.jsonld | 21 -------- .../cochlearNuclearComplex.jsonld | 18 ------- .../collateralSulcus.jsonld | 14 ------ .../collectionOfBasalGanglia.jsonld | 14 ------ ...ommissuralNucleusOfTheSolitaryTract.jsonld | 17 ------- .../commissuralNucleusOfVagusNerve.jsonld | 22 --------- ...ingMultipleBaseRegionalPartsOfBrain.jsonld | 16 ------ .../UBERONParcellation/copulaPyramidis.jsonld | 16 ------ .../coreOfNucleusAccumbens.jsonld | 23 --------- .../coronaRadiataOfNeuraxis.jsonld | 16 ------ .../UBERONParcellation/corpusCallosum.jsonld | 16 ------ .../UBERONParcellation/corpusStriatum.jsonld | 14 ------ .../corticalAmygdaloidNucleus.jsonld | 30 ------------ .../UBERONParcellation/corticalLayerI.jsonld | 34 ------------- .../UBERONParcellation/corticalLayerII.jsonld | 31 ------------ .../corticalLayerIII.jsonld | 32 ------------ .../UBERONParcellation/corticalLayerIV.jsonld | 32 ------------ .../UBERONParcellation/corticalLayerV.jsonld | 32 ------------ .../UBERONParcellation/corticalLayerVI.jsonld | 32 ------------ .../corticomedialNuclearComplex.jsonld | 24 --------- .../corticospinalTract.jsonld | 22 --------- .../corticotectalTract.jsonld | 20 -------- .../UBERONParcellation/cranialNerveII.jsonld | 23 --------- .../cuneateFasciculusOfMedulla.jsonld | 18 ------- .../cuneiformNucleus.jsonld | 21 -------- .../cuneocerebellarTract.jsonld | 18 ------- .../UBERONParcellation/cuneusCortex.jsonld | 22 --------- ...cytoarchitecturalPartOfDentateGyrus.jsonld | 16 ------ ...ssationOfSuperiorCerebellarPeduncle.jsonld | 14 ------ .../decussationOfTrochlearNerve.jsonld | 14 ------ ...socellularPartOfMedialDorsalNucleus.jsonld | 20 -------- .../dentateGyrusGranuleCellLayer.jsonld | 14 ------ .../dentateGyrusMolecularLayer.jsonld | 14 ------ .../dentateGyrusOfHippocampalFormation.jsonld | 23 --------- .../UBERONParcellation/dentateNucleus.jsonld | 24 --------- .../dentatothalamicTract.jsonld | 18 ------- .../diagonalBandOfBroca.jsonld | 35 ------------- .../UBERONParcellation/diencephalon.jsonld | 22 --------- .../diffuseReticularNucleus.jsonld | 29 ----------- ...rsalAccessoryInferiorOlivaryNucleus.jsonld | 25 ---------- .../dorsalAcousticStria.jsonld | 20 -------- .../UBERONParcellation/dorsalCapOfKooy.jsonld | 16 ------ .../dorsalCochlearNucleus.jsonld | 23 --------- .../dorsalColumnNucleus.jsonld | 16 ------ .../dorsalExternalArcuateFiberBundle.jsonld | 23 --------- .../dorsalHypothalamicArea.jsonld | 21 -------- .../dorsalLongitudinalFasciculus.jsonld | 28 ----------- ...ongitudinalFasciculusOfHypothalamus.jsonld | 18 ------- ...rsalLongitudinalFasciculusOfMedulla.jsonld | 24 --------- ...salLongitudinalFasciculusOfMidbrain.jsonld | 25 ---------- .../dorsalLongitudinalFasciculusOfPons.jsonld | 17 ------- .../dorsalMotorNucleusOfVagusNerve.jsonld | 37 -------------- .../dorsalNucleusOfLateralLemniscus.jsonld | 24 --------- ...dorsalNucleusOfMedialGeniculateBody.jsonld | 32 ------------ .../dorsalNucleusOfTrapezoidBody.jsonld | 17 ------- .../dorsalOculomotorNucleus.jsonld | 20 -------- .../UBERONParcellation/dorsalPallidum.jsonld | 14 ------ .../dorsalParamedianReticularNucleus.jsonld | 25 ---------- .../dorsalPlusVentralThalamus.jsonld | 22 --------- .../dorsalRapheNucleus.jsonld | 14 ------ .../dorsalSeptalNucleus.jsonld | 17 ------- .../UBERONParcellation/dorsalStriatum.jsonld | 23 --------- .../dorsalTegmentalDecussation.jsonld | 14 ------ .../dorsalTegmentalNucleus.jsonld | 30 ------------ .../dorsalTegmentalNucleusParsDorsalis.jsonld | 18 ------- ...dorsalTegmentalNucleusParsVentralis.jsonld | 20 -------- .../dorsalTrigeminalTract.jsonld | 30 ------------ .../dorsolateralFasciculusOfMedulla.jsonld | 27 ---------- .../dorsolateralPrefrontalCortex.jsonld | 17 ------- .../dorsomedialNucleusOfHypothalamus.jsonld | 25 ---------- .../emboliformNucleus.jsonld | 27 ---------- .../endopiriformNucleus.jsonld | 19 ------- .../entorhinalCortex.jsonld | 25 ---------- .../entorhinalCortexLayer2.jsonld | 21 -------- .../entorhinalCortexLayer3.jsonld | 22 --------- .../entorhinalCortexLayer5.jsonld | 16 ------ .../entorhinalCortexLayer6.jsonld | 16 ------ .../UBERONParcellation/epithalamus.jsonld | 17 ------- .../externalCapsuleOfTelencephalon.jsonld | 19 ------- ...externalNucleusOfInferiorColliculus.jsonld | 22 --------- .../extrastriateCortex.jsonld | 19 ------- .../UBERONParcellation/extremeCapsule.jsonld | 17 ------- .../facialMotorNucleus.jsonld | 14 ------ .../UBERONParcellation/facialNerveRoot.jsonld | 14 ------ .../fasciculusOfBrain.jsonld | 14 ------ .../UBERONParcellation/fasciolarGyrus.jsonld | 24 --------- .../fastigialNucleus.jsonld | 27 ---------- .../flocculonodularLobe.jsonld | 23 --------- ...locculonodularLobeHemispherePortion.jsonld | 14 ------ instances/UBERONParcellation/flocculus.jsonld | 23 --------- instances/UBERONParcellation/forebrain.jsonld | 17 ------- .../forebrainmidbrainBoundary.jsonld | 14 ------ .../UBERONParcellation/fornixOfBrain.jsonld | 26 ---------- .../UBERONParcellation/fourthVentricle.jsonld | 25 ---------- .../fourthVentricleAperture.jsonld | 14 ------ ...rthVentricleChoroidPlexusEpithelium.jsonld | 14 ------ .../fourthVentricleChoroidPlexusStroma.jsonld | 14 ------ .../fourthVentricleEpendyma.jsonld | 14 ------ .../UBERONParcellation/frontalCortex.jsonld | 20 -------- .../UBERONParcellation/frontalLobe.jsonld | 20 -------- .../frontalOperculum.jsonld | 19 ------- .../UBERONParcellation/frontalPole.jsonld | 16 ------ .../frontoorbitalGyrus.jsonld | 19 ------- .../functionalPartOfBrain.jsonld | 16 ------ .../UBERONParcellation/fundusStriati.jsonld | 19 ------- .../UBERONParcellation/fusiformGyrus.jsonld | 24 --------- .../futureHindbrainMeninx.jsonld | 14 ------ .../futureMetencephalon.jsonld | 14 ------ .../futureMyelencephalon.jsonld | 14 ------ .../genuOfCorpusCallosum.jsonld | 23 --------- .../UBERONParcellation/globusPallidus.jsonld | 22 --------- .../glossopharyngealNerveFiberBundle.jsonld | 21 -------- .../glossopharyngealNerveRoot.jsonld | 14 ------ .../gracileFasciculus.jsonld | 26 ---------- .../gracileFasciculusOfMedulla.jsonld | 27 ---------- .../grayMatterOfHindbrain.jsonld | 14 ------ ...grossAnatomicalPartsOfTheCerebellum.jsonld | 14 ------ .../UBERONParcellation/gyrusRectus.jsonld | 22 --------- instances/UBERONParcellation/habenula.jsonld | 26 ---------- .../habenularCommissure.jsonld | 14 ------ ...ointerpeduncularTractOfDiencephalon.jsonld | 16 ------ ...enulointerpeduncularTractOfMidbrain.jsonld | 17 ------- .../headOfCaudateNucleus.jsonld | 19 ------- .../hilumOfDentateNucleus.jsonld | 19 ------- .../hilusOfDentateGyrus.jsonld | 14 ------ instances/UBERONParcellation/hindbrain.jsonld | 16 ------ .../hindbrainCommissure.jsonld | 14 ------ .../hindbrainCorticalIntermediateZone.jsonld | 14 ------ .../hindbrainMarginalLayer.jsonld | 14 ------ .../hindbrainNucleus.jsonld | 14 ------ .../hindbrainSubarachnoidSpace.jsonld | 14 ------ .../hindbrainVenousSystem.jsonld | 14 ------ .../hippocampalCommissure.jsonld | 14 ------ .../hippocampalFormation.jsonld | 22 --------- .../hippocampusAlveus.jsonld | 22 --------- .../hippocampusFimbria.jsonld | 27 ---------- .../horizontalLimbOfTheDiagonalBand.jsonld | 22 --------- .../hypoglossalNerveRoot.jsonld | 23 --------- .../UBERONParcellation/hypothalamus.jsonld | 20 -------- .../UBERONParcellation/induseumGriseum.jsonld | 25 ---------- .../inferiorCentralNucleus.jsonld | 20 -------- .../inferiorCerebellarPeduncle.jsonld | 25 ---------- .../inferiorColliculus.jsonld | 25 ---------- .../inferiorFrontalGyrus.jsonld | 21 -------- .../inferiorHornOfTheLateralVentricle.jsonld | 25 ---------- .../inferiorLongitudinalFasciculus.jsonld | 18 ------- .../inferiorOccipitalGyrus.jsonld | 18 ------- .../inferiorOccipitofrontalFasciculus.jsonld | 18 ------- .../inferiorOlivaryComplex.jsonld | 29 ----------- .../inferiorParietalCortex.jsonld | 22 --------- .../inferiorRostralGyrus.jsonld | 16 ------ .../inferiorTemporalGyrus.jsonld | 19 ------- .../inferiorTransverseFrontopolarGyrus.jsonld | 16 ------ .../inferiorVestibularNucleus.jsonld | 18 ------- .../insectProtocerebrum.jsonld | 14 ------ .../insectSupraesophagealGanglion.jsonld | 14 ------ instances/UBERONParcellation/insula.jsonld | 31 ------------ ...teranterodorsalNucleusOfTheThalamus.jsonld | 22 --------- .../intercalatedAmygdaloidNuclei.jsonld | 30 ------------ ...eafletOfTheLateralGeniculateComplex.jsonld | 19 ------- .../intermediateAcousticStria.jsonld | 19 ------- .../intermediateHypothalamicRegion.jsonld | 22 --------- .../intermediateOculomotorNucleus.jsonld | 14 ------ .../intermediateOrbitalGyrus.jsonld | 16 ------ .../intermediatePartOfHypophysis.jsonld | 22 --------- .../intermediatePeriventricularNucleus.jsonld | 24 --------- .../internalArcuateFiberBundle.jsonld | 24 --------- .../internalCapsuleOfTelencephalon.jsonld | 20 -------- .../internalMedullaryLaminaOfThalamus.jsonld | 25 ---------- .../interpeduncularNucleus.jsonld | 24 --------- ...rpolarPartOfSpinalTrigeminalNucleus.jsonld | 26 ---------- .../interstitialNucleusOfCajal.jsonld | 26 ---------- .../interthalamicAdhesion.jsonld | 18 ------- .../intralaminarNuclearGroup.jsonld | 27 ---------- .../intraparietalSulcus.jsonld | 22 --------- .../islaMagnaOfCalleja.jsonld | 20 -------- .../UBERONParcellation/islandOfCalleja.jsonld | 22 --------- ...islandsOfCallejaOfOlfactoryTubercle.jsonld | 17 ------- .../isthmusOfCingulateGyrus.jsonld | 26 ---------- .../juxtarestiformBody.jsonld | 16 ------ .../laminaOfSeptumPellucidum.jsonld | 19 ------- .../lateralAmygdaloidNucleus.jsonld | 25 ---------- ...alAmygdaloidNucleusDorsolateralPart.jsonld | 18 ------- ...lAmygdaloidNucleusVentrolateralPart.jsonld | 18 ------- ...alAmygdaloidNucleusVentromedialPart.jsonld | 18 ------- .../lateralCervicalNucleus.jsonld | 17 ------- .../lateralEminenceOfFourthVentricle.jsonld | 14 ------ .../lateralEminenceOfHypophysis.jsonld | 14 ------ .../lateralGeniculateBody.jsonld | 27 ---------- .../lateralGlobusPallidus.jsonld | 43 ---------------- .../lateralHabenularNucleus.jsonld | 21 -------- .../lateralHypothalamicArea.jsonld | 28 ----------- .../lateralHypothalamicNucleus.jsonld | 20 -------- .../lateralLemniscus.jsonld | 20 -------- .../lateralMammillaryNucleus.jsonld | 24 --------- ...eralMedullaryLaminaOfGlobusPallidus.jsonld | 40 --------------- .../lateralNuclearGroupOfThalamus.jsonld | 29 ----------- .../lateralNucleusOfStriaTerminalis.jsonld | 19 ------- .../lateralOccipitalCortex.jsonld | 22 --------- .../lateralOlfactoryStria.jsonld | 14 ------ .../lateralOrbitalFrontalCortex.jsonld | 16 ------ .../lateralOrbitalGyrus.jsonld | 17 ------- .../lateralParabrachialNucleus.jsonld | 14 ------ .../lateralParagigantocellularNucleus.jsonld | 22 --------- ...lateralPartOfBasalAmygdaloidNucleus.jsonld | 27 ---------- ...ateralPartOfMedialMammillaryNucleus.jsonld | 28 ----------- .../lateralPericuneateNucleus.jsonld | 17 ------- .../lateralPesLemniscus.jsonld | 25 ---------- .../lateralPreopticNucleus.jsonld | 22 --------- .../lateralPulvinarNucleus.jsonld | 22 --------- .../lateralRecessOfFourthVentricle.jsonld | 14 ------ .../lateralReticularNucleus.jsonld | 19 ------- .../lateralSeptalComplex.jsonld | 14 ------ .../lateralSeptalNucleus.jsonld | 22 --------- .../lateralSpinalNucleus.jsonld | 17 ------- .../UBERONParcellation/lateralSulcus.jsonld | 14 ------ .../lateralSuperiorOlivaryNucleus.jsonld | 27 ---------- .../lateralTuberalNucleus.jsonld | 24 --------- .../lateralVestibularNucleus.jsonld | 23 --------- .../layerOfHippocampus.jsonld | 19 ------- .../lenticularFasciculus.jsonld | 27 ---------- .../lentiformNucleus.jsonld | 14 ------ .../UBERONParcellation/limbicLobe.jsonld | 14 ------ .../UBERONParcellation/limenOfInsula.jsonld | 25 ---------- .../UBERONParcellation/limitansNucleus.jsonld | 20 -------- .../UBERONParcellation/linearNucleus.jsonld | 14 ------ .../UBERONParcellation/lingualGyrus.jsonld | 22 --------- .../lobeOfCerebralHemisphere.jsonld | 25 ---------- .../UBERONParcellation/locusCeruleus.jsonld | 29 ----------- .../longitudinalPontineFibers.jsonld | 22 --------- .../UBERONParcellation/lowerRhombicLip.jsonld | 14 ------ ...llularNucleusOfMedialGeniculateBody.jsonld | 36 -------------- ...nocellularPartOfMedialDorsalNucleus.jsonld | 28 ----------- .../magnocellularPartOfRedNucleus.jsonld | 28 ----------- ...ellularPartOfVentralAnteriorNucleus.jsonld | 31 ------------ .../magnocellularPreopticNucleus.jsonld | 16 ------ .../UBERONParcellation/mammillaryBody.jsonld | 23 --------- .../mammillaryPeduncle.jsonld | 20 -------- ...mammillothalamicTractOfHypothalamus.jsonld | 19 ------- .../matrixCompartment.jsonld | 18 ------- .../matrixCompartmentOfCaudateNucleus.jsonld | 16 ------ .../matrixCompartmentOfPutamen.jsonld | 14 ------ .../matrixPartOfHeadOfCaudateNucleus.jsonld | 17 ------- .../matrixPartOfTailOfCaudateNucleus.jsonld | 17 ------- .../medialAccessoryOlive.jsonld | 17 ------- .../medialAmygdaloidNucleus.jsonld | 14 ------ .../medialDorsalNucleusOfThalamus.jsonld | 41 ---------------- .../medialEntorhinalCortex.jsonld | 17 ------- .../medialForebrainBundle.jsonld | 24 --------- .../medialGeniculateBody.jsonld | 27 ---------- .../medialGlobusPallidus.jsonld | 48 ------------------ .../medialLemniscusOfMedulla.jsonld | 18 ------- .../medialLemniscusOfMidbrain.jsonld | 19 ------- .../medialLemniscusOfPons.jsonld | 21 -------- .../medialLongitudinalFasciculus.jsonld | 18 ------- ...dialLongitudinalFasciculusOfMedulla.jsonld | 19 ------- ...ialLongitudinalFasciculusOfMidbrain.jsonld | 19 ------- .../medialLongitudinalFasciculusOfPons.jsonld | 20 -------- .../medialMammillaryNucleus.jsonld | 23 --------- ...dialMedullaryLaminaOfGlobusPallidus.jsonld | 38 -------------- .../medialNucleusOfStriaTerminalis.jsonld | 19 ------- .../medialNucleusOfTrapezoidBody.jsonld | 16 ------ .../medialOculomotorNucleus.jsonld | 20 -------- .../medialOlfactoryGyrus.jsonld | 17 ------- .../medialOrbitalFrontalCortex.jsonld | 18 ------- .../medialOrbitalGyrus.jsonld | 18 ------- .../medialParabrachialNucleus.jsonld | 19 ------- .../medialPartOfBasalAmygdaloidNucleus.jsonld | 30 ------------ ...medialPartOfMedialMammillaryNucleus.jsonld | 27 ---------- .../medialPartOfVentralLateralNucleus.jsonld | 30 ------------ .../medialPericuneateNucleus.jsonld | 17 ------- .../medialPesLemniscus.jsonld | 18 ------- .../medialPreopticNucleus.jsonld | 22 --------- .../medialPulvinarNucleus.jsonld | 20 -------- .../medialSeptalNucleus.jsonld | 23 --------- .../medialSubnucleusOfSolitaryTract.jsonld | 24 --------- .../medialSuperiorOlivaryNucleus.jsonld | 29 ----------- .../medialTransverseFrontopolarGyrus.jsonld | 16 ------ .../medialVentralTegmentalArea.jsonld | 16 ------ .../medialVestibularNucleus.jsonld | 24 --------- .../medianEminenceOfNeurohypophysis.jsonld | 14 ------ .../UBERONParcellation/medianNerve.jsonld | 16 ------ .../medianPreopticNucleus.jsonld | 22 --------- .../medianRapheNucleus.jsonld | 25 ---------- .../medullaOblongata.jsonld | 23 --------- .../medullaryAnteriorHorn.jsonld | 18 ------- .../medullaryRapheNuclearComplex.jsonld | 20 -------- .../medullaryReticularFormation.jsonld | 29 ----------- .../meninxOfHindbrain.jsonld | 14 ------ ...sencephalicNucleusOfTrigeminalNerve.jsonld | 31 ------------ ...mesencephalicTractOfTrigeminalNerve.jsonld | 23 --------- .../UBERONParcellation/metathalamus.jsonld | 22 --------- .../UBERONParcellation/metencephalon.jsonld | 17 ------- .../metencephalonSulcusLimitans.jsonld | 14 ------ instances/UBERONParcellation/midbrain.jsonld | 17 ------- .../midbrainCerebralAqueduct.jsonld | 32 ------------ .../midbrainRapheNuclei.jsonld | 14 ------ .../midbrainReticularFormation.jsonld | 22 --------- .../UBERONParcellation/midbrainTectum.jsonld | 23 --------- .../midbrainTegmentum.jsonld | 21 -------- .../midbrainhindbrainBoundary.jsonld | 14 ------ .../middleCerebellarPeduncle.jsonld | 24 --------- .../middleFrontalGyrus.jsonld | 25 ---------- .../middleTemporalGyrus.jsonld | 20 -------- .../midlineNuclearGroup.jsonld | 27 ---------- .../motorNucleusOfTrigeminalNerve.jsonld | 14 ------ .../motorRootOfTrigeminalNerve.jsonld | 30 ------------ .../UBERONParcellation/mushroomBody.jsonld | 14 ------ .../myelencephalonSulcusLimitans.jsonld | 14 ------ instances/UBERONParcellation/neocortex.jsonld | 26 ---------- .../neodentatePartOfDentateNucleus.jsonld | 19 ------- .../neuralLobeOfNeurohypophysis.jsonld | 42 ---------------- .../UBERONParcellation/neuralNucleus.jsonld | 22 --------- .../UBERONParcellation/neurohypophysis.jsonld | 14 ------ .../nucleusAccumbens.jsonld | 14 ------ .../UBERONParcellation/nucleusAmbiguus.jsonld | 19 ------- .../UBERONParcellation/nucleusIncertus.jsonld | 25 ---------- .../nucleusIntercalatus.jsonld | 24 --------- .../nucleusOfAnteriorCommissure.jsonld | 14 ------ .../UBERONParcellation/nucleusOfBrain.jsonld | 14 ------ .../nucleusOfCerebellarNuclearComplex.jsonld | 14 ------ .../nucleusOfDiagonalBand.jsonld | 14 ------ .../nucleusOfLateralOlfactoryTract.jsonld | 14 ------ .../nucleusOfMedialEminence.jsonld | 18 ------- .../nucleusOfOpticTract.jsonld | 21 -------- .../nucleusOfPosteriorCommissure.jsonld | 24 --------- .../nucleusOfSolitaryTract.jsonld | 29 ----------- ...fTheBrachiumOfTheInferiorColliculus.jsonld | 20 -------- .../nucleusOfTrapezoidBody.jsonld | 24 --------- .../nucleusPrepositus.jsonld | 23 --------- .../nucleusRaphePallidus.jsonld | 20 -------- .../nucleusSubceruleus.jsonld | 14 ------ .../UBERONParcellation/occipitalCortex.jsonld | 19 ------- .../UBERONParcellation/occipitalGyrus.jsonld | 16 ------ .../UBERONParcellation/occipitalLobe.jsonld | 17 ------- .../occipitotemporalSulcus.jsonld | 14 ------ .../oculomotorNerveRoot.jsonld | 21 -------- .../oculomotorNuclearComplex.jsonld | 29 ----------- .../UBERONParcellation/olfactoryBulb.jsonld | 21 -------- .../olfactoryBulbGranuleCellLayer.jsonld | 14 ------ .../olfactoryBulbMainGlomerularLayer.jsonld | 17 ------- .../olfactoryBulbMitralCellLayer.jsonld | 21 -------- .../olfactoryBulbOuterNerveLayer.jsonld | 17 ------- .../UBERONParcellation/olfactoryCortex.jsonld | 19 ------- .../olfactoryEntorhinalCortex.jsonld | 16 ------ .../UBERONParcellation/olfactoryTract.jsonld | 14 ------ .../olfactoryTrigone.jsonld | 17 ------- .../olfactoryTubercle.jsonld | 18 ------- .../olivaryPretectalNucleus.jsonld | 26 ---------- ...opercularPartOfInferiorFrontalGyrus.jsonld | 23 --------- .../UBERONParcellation/opticChiasma.jsonld | 23 --------- .../opticRecessOfThirdVentricle.jsonld | 22 --------- .../UBERONParcellation/opticTract.jsonld | 14 ------ .../oralPartOfSpinalTrigeminalNucleus.jsonld | 25 ---------- .../oralPartOfVentralLateralNucleus.jsonld | 31 ------------ ...lPartOfVentralPosterolateralNucleus.jsonld | 30 ------------ .../oralPontineReticularNucleus.jsonld | 21 -------- .../oralPulvinarNucleus.jsonld | 24 --------- .../orbitalGyriComplex.jsonld | 17 ------- .../orbitalPartOfInferiorFrontalGyrus.jsonld | 21 -------- .../orbitofrontalCortex.jsonld | 21 -------- .../ovalNucleusOfStriaTerminalis.jsonld | 18 ------- .../UBERONParcellation/paleocortex.jsonld | 20 -------- .../paleodentateOfDentateNucleus.jsonld | 21 -------- .../pallidotegmentalFasciculus.jsonld | 20 -------- instances/UBERONParcellation/pallidum.jsonld | 14 ------ instances/UBERONParcellation/pallium.jsonld | 20 -------- .../parabigeminalNucleus.jsonld | 22 --------- .../parabrachialNucleus.jsonld | 18 ------- .../parabrachialPigmentalNucleus.jsonld | 17 ------- .../paracentralLobule.jsonld | 16 ------ .../UBERONParcellation/paraflocculus.jsonld | 14 ------ .../parahippocampalGyrus.jsonld | 21 -------- ...aralaminarPartOfMedialDorsalNucleus.jsonld | 31 ------------ .../paramedianReticularNucleus.jsonld | 19 ------- .../parasolitaryNucleus.jsonld | 18 ------- .../UBERONParcellation/parasubiculum.jsonld | 20 -------- .../paratenialNucleus.jsonld | 25 ---------- .../paraterminalGyrus.jsonld | 23 --------- .../paraventricularNucleusOfThalamus.jsonld | 24 --------- ...OfTheHypothalamusDescendingDivision.jsonld | 20 -------- ...amusDescendingDivisionFornicealPart.jsonld | 23 --------- ...ingDivisionLateralParvicellularPart.jsonld | 22 --------- ...nMedialParvicellularPartVentralZone.jsonld | 23 --------- ...heHypothalamusMagnocellularDivision.jsonld | 21 -------- ...arDivisionAnteriorMagnocellularPart.jsonld | 22 --------- ...ularDivisionMedialMagnocellularPart.jsonld | 22 --------- ...rDivisionPosteriorMagnocellularPart.jsonld | 22 --------- ...steriorMagnocellularPartLateralZone.jsonld | 17 ------- ...osteriorMagnocellularPartMedialZone.jsonld | 17 ------- ...heHypothalamusParvicellularDivision.jsonld | 21 -------- .../paravermicLobuleX.jsonld | 14 ------ .../paravermisLobuleArea.jsonld | 14 ------ ...aravermisPartsOfTheCerebellarCortex.jsonld | 14 ------ .../UBERONParcellation/parietalCortex.jsonld | 19 ------- .../UBERONParcellation/parietalLobe.jsonld | 14 ------ .../parietooccipitalSulcus.jsonld | 14 ------ .../parsDistalisOfAdenohypophysis.jsonld | 30 ------------ .../parsIntercerebralis.jsonld | 14 ------ ...parsPostremaOfVentralLateralNucleus.jsonld | 27 ---------- ...vicellularPartOfMedialDorsalNucleus.jsonld | 35 ------------- ...ellularPartOfVentralAnteriorNucleus.jsonld | 25 ---------- ...arPartOfVentralPosteromedialNucleus.jsonld | 38 -------------- .../parvocellularOculomotorNucleus.jsonld | 14 ------ .../parvocellularPartOfRedNucleus.jsonld | 29 ----------- .../pedunculopontineTegmentalNucleus.jsonld | 14 ------ .../periamygdaloidArea.jsonld | 27 ---------- .../periamygdaloidCortex.jsonld | 17 ------- .../pericalcarineCortex.jsonld | 16 ------ ...icentralNucleusOfInferiorColliculus.jsonld | 22 --------- .../periolivaryNucleus.jsonld | 23 --------- .../peripeduncularNucleus.jsonld | 14 ------ .../perirhinalCortex.jsonld | 20 -------- .../peritrigeminalNucleus.jsonld | 17 ------- .../UBERONParcellation/pinealBody.jsonld | 14 ------ .../UBERONParcellation/piriformCortex.jsonld | 38 -------------- .../piriformCortexLayer1a.jsonld | 16 ------ .../piriformCortexLayer1b.jsonld | 16 ------ .../UBERONParcellation/pituitaryGland.jsonld | 22 --------- .../UBERONParcellation/pituitaryStalk.jsonld | 36 -------------- .../UBERONParcellation/planumPolare.jsonld | 16 ------ instances/UBERONParcellation/pons.jsonld | 19 ------- .../pontineNuclearGroup.jsonld | 26 ---------- .../pontineRapheNucleus.jsonld | 22 --------- .../pontineReticularFormation.jsonld | 23 --------- .../pontineTegmentum.jsonld | 22 --------- .../pontobulbarNucleus.jsonld | 20 -------- .../postcentralGyrus.jsonld | 22 --------- .../postcentralSulcusOfParietalLobe.jsonld | 14 ------ .../postcommissuralFornixOfBrain.jsonld | 20 -------- .../posteriorCingulateCortex.jsonld | 20 -------- .../posteriorCingulateGyrus.jsonld | 21 -------- .../posteriorColumnOfFornix.jsonld | 23 --------- .../posteriorCommissure.jsonld | 14 ------ .../posteriorHornLateralVentricle.jsonld | 27 ---------- .../posteriorHypothalamicRegion.jsonld | 21 -------- .../posteriorLimbOfInternalCapsule.jsonld | 21 -------- .../posteriorLobeOfCerebellum.jsonld | 14 ------ .../posteriorMedianEminence.jsonld | 17 ------- .../posteriorNuclearComplexOfThalamus.jsonld | 27 ---------- .../posteriorNucleusOfHypothalamus.jsonld | 24 --------- .../posteriorNucleusOfThalamus.jsonld | 20 -------- .../posteriorOrbitalGyrus.jsonld | 16 ------ .../posteriorParahippocampalGyrus.jsonld | 23 --------- .../posteriorPartOfAnteriorCommissure.jsonld | 26 ---------- .../posteriorPeriventricularNucleus.jsonld | 27 ---------- .../posteriorThalamicRadiation.jsonld | 19 ------- .../posteriorTransverseTemporalGyrus.jsonld | 18 ------- ...dorsalNucleusOfMedialGeniculateBody.jsonld | 20 -------- .../posteroventralCochlearNucleus.jsonld | 23 --------- .../postnatalSubventricularZone.jsonld | 28 ----------- .../UBERONParcellation/postsubiculum.jsonld | 17 ------- .../UBERONParcellation/precentralGyrus.jsonld | 21 -------- .../precentralOperculum.jsonld | 17 ------- .../precommissuralFornixOfForebrain.jsonld | 18 ------- .../UBERONParcellation/precuneusCortex.jsonld | 21 -------- .../UBERONParcellation/predorsalBundle.jsonld | 21 -------- .../prefrontalCortex.jsonld | 18 ------- .../premammillaryNucleus.jsonld | 20 -------- .../UBERONParcellation/premotorCortex.jsonld | 16 ------ .../preoccipitalNotch.jsonld | 23 --------- .../preolivaryNucleus.jsonld | 17 ------- .../UBERONParcellation/preopticArea.jsonld | 27 ---------- .../preopticPeriventricularNucleus.jsonld | 28 ----------- .../UBERONParcellation/presubiculum.jsonld | 20 -------- .../pretectalNucleus.jsonld | 20 -------- .../UBERONParcellation/pretectalRegion.jsonld | 25 ---------- .../primaryMotorCortex.jsonld | 25 ---------- .../primaryOlfactoryCortex.jsonld | 16 ------ ...ySomatosensoryAreaBarrelFieldLayer1.jsonld | 16 ------ ...ySomatosensoryAreaBarrelFieldLayer4.jsonld | 17 ------- ...ySomatosensoryAreaBarrelFieldLayer5.jsonld | 18 ------- ...SomatosensoryAreaBarrelFieldLayer6a.jsonld | 17 ------- ...SomatosensoryAreaBarrelFieldLayer6b.jsonld | 17 ------- .../primarySomatosensoryCortex.jsonld | 23 --------- .../primarySomatosensoryCortexLayer6.jsonld | 17 ------- .../primarySuperiorOlive.jsonld | 17 ------- .../primaryVisualCortex.jsonld | 36 -------------- ...AnteriorDivisionOfSupraopticNucleus.jsonld | 17 ------- ...alPartOfVentralPosteromedialNucleus.jsonld | 22 --------- .../principalPretectalNucleus.jsonld | 16 ------ ...ipalSensoryNucleusOfTrigeminalNerve.jsonld | 14 ------ instances/UBERONParcellation/putamen.jsonld | 17 ------- .../pyramidalLayerOfCA1.jsonld | 22 --------- .../pyramidalLayerOfCA2.jsonld | 22 --------- .../radiationOfThalamus.jsonld | 17 ------- .../UBERONParcellation/redNucleus.jsonld | 22 --------- .../regionalPartOfBrain.jsonld | 14 ------ .../regionalPartOfCerebellarCortex.jsonld | 14 ------ .../reticularFormation.jsonld | 19 ------- .../reticulotegmentalNucleus.jsonld | 22 --------- .../retrochiasmaticArea.jsonld | 14 ------ ...ubralAreaOfMidbrainReticularNucleus.jsonld | 14 ------ .../retrotrapezoidNucleus.jsonld | 16 ------ .../UBERONParcellation/reuniensNucleus.jsonld | 24 --------- .../UBERONParcellation/rhinalSulcus.jsonld | 14 ------ .../UBERONParcellation/rhombicLip.jsonld | 14 ------ .../rhomboidalNucleus.jsonld | 23 --------- .../rootOfAbducensNerve.jsonld | 22 --------- .../rootOfOlfactoryNerve.jsonld | 14 ------ .../rootOfOpticNerve.jsonld | 14 ------ .../rootOfTrochlearNerve.jsonld | 23 --------- .../rootOfVagusNerve.jsonld | 14 ------ .../rostralAnteriorCingulateCortex.jsonld | 16 ------ ...cleusOfMedialLongitudinalFasciculus.jsonld | 21 -------- .../rostralIntralaminarNuclearGroup.jsonld | 21 -------- .../rostralLinearNucleus.jsonld | 18 ------- .../rostralMiddleFrontalGyrus.jsonld | 18 ------- .../rostralMigratoryStream.jsonld | 17 ------- ...ralPortionOfTheMedialAccessoryOlive.jsonld | 17 ------- .../rostralSpinocerebellarTract.jsonld | 16 ------ .../rostrumOfCorpusCallosum.jsonld | 19 ------- .../secondaryOlfactoryCortex.jsonld | 20 -------- .../secondaryVisualCortex.jsonld | 32 ------------ .../segmentalSubdivisionOfHindbrain.jsonld | 14 ------ .../septalNuclearComplex.jsonld | 22 --------- .../septofimbrialNucleus.jsonld | 20 -------- .../septohippocampalNucleus.jsonld | 16 ------ .../septumOfTelencephalon.jsonld | 14 ------ .../septumPellucidum.jsonld | 23 --------- .../shellOfNucleusAccumbens.jsonld | 22 --------- .../somatosensoryCortex.jsonld | 16 ------ .../UBERONParcellation/sommersSector.jsonld | 17 ------- .../spinalTrigeminalTractOfMedulla.jsonld | 17 ------- .../spinalTrigeminalTractOfPons.jsonld | 17 ------- .../UBERONParcellation/spinocerebellum.jsonld | 14 ------ .../spinothalamicTract.jsonld | 16 ------ .../spinothalamicTractOfMedulla.jsonld | 18 ------- .../spinothalamicTractOfMidbrain.jsonld | 18 ------- .../spinothalamicTractOfPons.jsonld | 25 ---------- .../spleniumOfTheCorpusCallosum.jsonld | 20 -------- .../stratumZonaleOfThalamus.jsonld | 18 ------- .../UBERONParcellation/striaMedullaris.jsonld | 24 --------- .../UBERONParcellation/striaTerminalis.jsonld | 25 ---------- instances/UBERONParcellation/striatum.jsonld | 25 ---------- ...triosomalPartOfBodyOfCaudateNucleus.jsonld | 14 ------ .../striosomalPartOfCaudateNucleus.jsonld | 17 ------- .../striosomalPartOfPutamen.jsonld | 16 ------ .../subarachnoidFissure.jsonld | 14 ------ .../subarachnoidSpace.jsonld | 14 ------ .../subarachnoidSulcus.jsonld | 14 ------ .../subbrachialNucleus.jsonld | 18 ------- .../UBERONParcellation/subcallosalArea.jsonld | 23 --------- .../subcommissuralOrgan.jsonld | 20 -------- .../subcuneiformNucleus.jsonld | 14 ------ .../subfascicularNucleus.jsonld | 17 ------- .../subicularComplex.jsonld | 16 ------ instances/UBERONParcellation/subiculum.jsonld | 19 ------- .../sublentiformNucleus.jsonld | 16 ------ .../submedialNucleusOfThalamus.jsonld | 25 ---------- .../substantiaGelatinosa.jsonld | 26 ---------- .../substantiaInnominata.jsonld | 24 --------- .../UBERONParcellation/substantiaNigra.jsonld | 21 -------- .../substantiaNigraParsCompacta.jsonld | 27 ---------- .../substantiaNigraParsLateralis.jsonld | 24 --------- .../substantiaNigraParsReticulata.jsonld | 29 ----------- .../sulcusLimitansOfFourthVentricle.jsonld | 14 ------ .../UBERONParcellation/sulcusOfBrain.jsonld | 14 ------ ...perficialFeaturePartOfOccipitalLobe.jsonld | 16 ------ ...perficialFeaturePartOfTheCerebellum.jsonld | 14 ------ .../superiorCerebellarPeduncle.jsonld | 29 ----------- ...uperiorCerebellarPeduncleOfMidbrain.jsonld | 19 ------- .../superiorCerebellarPeduncleOfPons.jsonld | 19 ------- .../superiorColliculus.jsonld | 36 -------------- .../superiorFrontalGyrus.jsonld | 20 -------- .../superiorMedullaryVelum.jsonld | 23 --------- .../superiorOccipitalGyrus.jsonld | 17 ------- .../superiorOlivaryComplex.jsonld | 21 -------- .../superiorParietalCortex.jsonld | 21 -------- .../superiorRostralGyrus.jsonld | 16 ------ .../superiorSalivatoryNucleus.jsonld | 14 ------ .../superiorTemporalGyrus.jsonld | 17 ------- .../superiorTemporalSulcus.jsonld | 20 -------- .../superiorTransverseFrontopolarGyrus.jsonld | 16 ------ .../supracallosalGyrus.jsonld | 19 ------- .../suprachiasmaticNucleus.jsonld | 21 -------- ...prachiasmaticNucleusDorsomedialPart.jsonld | 17 ------- ...achiasmaticNucleusVentrolateralPart.jsonld | 17 ------- .../suprageniculateNucleusOfThalamus.jsonld | 19 ------- .../supramammillaryNucleus.jsonld | 20 -------- .../supramarginalGyrus.jsonld | 20 -------- .../supraopticNucleus.jsonld | 25 ---------- .../supraspinalNucleus.jsonld | 19 ------- .../taeniaTectumOfBrain.jsonld | 19 ------- .../tailOfCaudateNucleus.jsonld | 19 ------- .../tectobulbarTract.jsonld | 17 ------- .../tectopontineTract.jsonld | 19 ------- .../telaChoroideaOfFourthVentricle.jsonld | 14 ------ .../telencephalicVentricle.jsonld | 25 ---------- .../UBERONParcellation/telencephalon.jsonld | 18 ------- .../UBERONParcellation/temporalCortex.jsonld | 19 ------- .../temporalCortexCingulum.jsonld | 19 ------- .../UBERONParcellation/temporalLobe.jsonld | 14 ------ .../temporalOperculum.jsonld | 17 ------- .../UBERONParcellation/temporalPole.jsonld | 19 ------- .../temporoparietalJunction.jsonld | 17 ------- .../UBERONParcellation/thalamicComplex.jsonld | 14 ------ .../thalamicFiberTract.jsonld | 14 ------ .../thalamicReticularNucleus.jsonld | 30 ------------ .../UBERONParcellation/thirdVentricle.jsonld | 21 -------- .../UBERONParcellation/tractOfBrain.jsonld | 14 ------ .../transverseFrontopolarGyriComplex.jsonld | 17 ------- .../transverseGyrusOfHeschl.jsonld | 22 --------- .../transversePontineFibers.jsonld | 24 --------- .../UBERONParcellation/trapezoidBody.jsonld | 19 ------- ...riangularPartOfInferiorFrontalGyrus.jsonld | 21 -------- .../triangularSeptalNucleus.jsonld | 21 -------- .../trigeminalNerveFibers.jsonld | 19 ------- .../trigeminalNerveRoot.jsonld | 14 ------ .../trochlearNucleus.jsonld | 14 ------ .../UBERONParcellation/tuberCinereum.jsonld | 23 --------- .../tuberalSupraopticNucleus.jsonld | 18 ------- .../tuberomammillaryNucleus.jsonld | 27 ---------- .../tuberomammillaryNucleusDorsalPart.jsonld | 19 ------- .../tuberomammillaryNucleusVentralPart.jsonld | 17 ------- .../uncinateFasciculus.jsonld | 32 ------------ .../uncinateFasciculusOfTheForebrain.jsonld | 17 ------- .../UBERONParcellation/upperRhombicLip.jsonld | 14 ------ .../vagalNerveFiberBundle.jsonld | 21 -------- .../valvulaCerebelli.jsonld | 14 ------ .../vasculatureOfBrain.jsonld | 14 ------ .../venousSystemOfBrain.jsonld | 14 ------ .../ventralAcousticStria.jsonld | 19 ------- .../ventralAmygdalofugalProjection.jsonld | 19 ------- .../ventralAnteriorNucleusOfThalamus.jsonld | 26 ---------- .../ventralCochlearNucleus.jsonld | 26 ---------- .../ventralExternalArcuateFiberBundle.jsonld | 22 --------- .../ventralLateralGeniculateNucleus.jsonld | 41 ---------------- .../ventralLateralNucleusOfThalamus.jsonld | 32 ------------ .../ventralNuclearGroup.jsonld | 28 ----------- .../ventralNucleusOfLateralLemniscus.jsonld | 24 --------- ...entralNucleusOfMedialGeniculateBody.jsonld | 34 ------------- ...ventralNucleusOfPosteriorCommissure.jsonld | 27 ---------- .../ventralNucleusOfTrapezoidBody.jsonld | 20 -------- .../ventralOculomotorNucleus.jsonld | 21 -------- .../UBERONParcellation/ventralPallidum.jsonld | 21 -------- .../ventralPosteriorNucleusOfThalamus.jsonld | 29 ----------- .../ventralPosteroinferiorNucleus.jsonld | 38 -------------- .../ventralPosterolateralNucleus.jsonld | 32 ------------ ...ntralPosteromedialNucleusOfThalamus.jsonld | 41 ---------------- .../UBERONParcellation/ventralStriatum.jsonld | 17 ------- .../ventralTegmentalArea.jsonld | 14 ------ .../ventralTegmentalDecussation.jsonld | 14 ------ .../ventralTegmentalNucleus.jsonld | 32 ------------ .../UBERONParcellation/ventralThalamus.jsonld | 22 --------- .../ventralTrigeminalTract.jsonld | 24 --------- .../ventricularSystemOfBrain.jsonld | 14 ------ .../UBERONParcellation/ventricularZone.jsonld | 14 ------ .../ventromedialNucleusOfHypothalamus.jsonld | 27 ---------- ...eFlocculonodularLobeOfTheCerebellum.jsonld | 17 ------- .../verticalLimbOfTheDiagonalBand.jsonld | 20 -------- instances/UBERONParcellation/vessel.jsonld | 14 ------ .../vestibularNuclearComplex.jsonld | 20 -------- .../vestibulocerebellarTract.jsonld | 14 ------ .../vestibulocerebellum.jsonld | 14 ------ .../vestibulocochlearNerveRoot.jsonld | 24 --------- .../whiteMatterLaminaOfCerebellum.jsonld | 25 ---------- .../whiteMatterOfCerebellum.jsonld | 17 ------- .../whiteMatterOfHindbrain.jsonld | 14 ------ .../whiteMatterOfMedullaOblongata.jsonld | 19 ------- .../whiteMatterOfTheCerebellarCortex.jsonld | 16 ------ .../UBERONParcellation/zonaIncerta.jsonld | 18 ------- instances/actionStatusType/active.jsonld | 17 ------- instances/actionStatusType/completed.jsonld | 18 ------- instances/actionStatusType/failed.jsonld | 19 ------- instances/actionStatusType/inactive.jsonld | 17 ------- instances/actionStatusType/paused.jsonld | 18 ------- instances/actionStatusType/pending.jsonld | 19 ------- instances/actionStatusType/potential.jsonld | 17 ------- instances/ageCategory/adolescent.jsonld | 16 ------ instances/ageCategory/adult.jsonld | 18 ------- instances/ageCategory/embryo.jsonld | 17 ------- instances/ageCategory/infant.jsonld | 16 ------ instances/ageCategory/juvenile.jsonld | 16 ------ instances/ageCategory/lateAdult.jsonld | 20 -------- instances/ageCategory/neonate.jsonld | 17 ------- instances/ageCategory/perinatal.jsonld | 16 ------ instances/ageCategory/primeAdult.jsonld | 17 ------- instances/ageCategory/youngAdult.jsonld | 18 ------- .../analysisTechnique/WardClustering.jsonld | 14 ------ .../anatomicalAxesOrientation/AIL.jsonld | 14 ------ .../anatomicalAxesOrientation/AIR.jsonld | 14 ------ .../anatomicalAxesOrientation/ALI.jsonld | 14 ------ .../anatomicalAxesOrientation/ALS.jsonld | 14 ------ .../anatomicalAxesOrientation/ARI.jsonld | 14 ------ .../anatomicalAxesOrientation/ARS.jsonld | 14 ------ .../anatomicalAxesOrientation/ASL.jsonld | 14 ------ .../anatomicalAxesOrientation/ASR.jsonld | 14 ------ .../anatomicalAxesOrientation/IAL.jsonld | 14 ------ .../anatomicalAxesOrientation/IAR.jsonld | 14 ------ .../anatomicalAxesOrientation/ILA.jsonld | 14 ------ .../anatomicalAxesOrientation/ILP.jsonld | 14 ------ .../anatomicalAxesOrientation/IPL.jsonld | 14 ------ .../anatomicalAxesOrientation/IPR.jsonld | 14 ------ .../anatomicalAxesOrientation/IRA.jsonld | 14 ------ .../anatomicalAxesOrientation/IRP.jsonld | 14 ------ .../anatomicalAxesOrientation/LAI.jsonld | 14 ------ .../anatomicalAxesOrientation/LAS.jsonld | 14 ------ .../anatomicalAxesOrientation/LIA.jsonld | 14 ------ .../anatomicalAxesOrientation/LIP.jsonld | 14 ------ .../anatomicalAxesOrientation/LPI.jsonld | 14 ------ .../anatomicalAxesOrientation/LPS.jsonld | 14 ------ .../anatomicalAxesOrientation/LSA.jsonld | 14 ------ .../anatomicalAxesOrientation/LSP.jsonld | 14 ------ .../anatomicalAxesOrientation/PIL.jsonld | 14 ------ .../anatomicalAxesOrientation/PIR.jsonld | 14 ------ .../anatomicalAxesOrientation/PLI.jsonld | 14 ------ .../anatomicalAxesOrientation/PLS.jsonld | 14 ------ .../anatomicalAxesOrientation/PRI.jsonld | 14 ------ .../anatomicalAxesOrientation/PRS.jsonld | 14 ------ .../anatomicalAxesOrientation/PSL.jsonld | 14 ------ .../anatomicalAxesOrientation/PSR.jsonld | 14 ------ .../anatomicalAxesOrientation/RAI.jsonld | 14 ------ .../anatomicalAxesOrientation/RAS.jsonld | 14 ------ .../anatomicalAxesOrientation/RIA.jsonld | 14 ------ .../anatomicalAxesOrientation/RIP.jsonld | 14 ------ .../anatomicalAxesOrientation/RPI.jsonld | 14 ------ .../anatomicalAxesOrientation/RPS.jsonld | 14 ------ .../anatomicalAxesOrientation/RSA.jsonld | 14 ------ .../anatomicalAxesOrientation/RSP.jsonld | 14 ------ .../anatomicalAxesOrientation/SAL.jsonld | 14 ------ .../anatomicalAxesOrientation/SAR.jsonld | 14 ------ .../anatomicalAxesOrientation/SLA.jsonld | 14 ------ .../anatomicalAxesOrientation/SLP.jsonld | 14 ------ .../anatomicalAxesOrientation/SPL.jsonld | 14 ------ .../anatomicalAxesOrientation/SPR.jsonld | 14 ------ .../anatomicalAxesOrientation/SRA.jsonld | 14 ------ .../anatomicalAxesOrientation/SRP.jsonld | 14 ------ .../landmarkBased.jsonld | 14 ------ .../stereotactic.jsonld | 14 ------ instances/anatomicalPlane/axialPlane.jsonld | 17 ------- instances/anatomicalPlane/frontalPlane.jsonld | 16 ------ .../anatomicalPlane/longitudinalPlane.jsonld | 16 ------ .../deterministicAnnotation.jsonld | 14 ------ .../probabalisticAnnotation.jsonld | 14 ------ .../annotationContourLine.jsonld | 14 ------ .../annotationType/annotationMask.jsonld | 14 ------ .../annotationType/annotationPoint.jsonld | 14 ------ .../annotationType/annotationSurface.jsonld | 14 ------ instances/atlasType/deterministicAtlas.jsonld | 14 ------ instances/atlasType/parcellationScheme.jsonld | 16 ------ instances/atlasType/probabilisticAtlas.jsonld | 16 ------ .../realSpokenWord.jsonld | 14 ------ instances/biologicalOrder/carnivora.jsonld | 16 ------ .../biologicalOrder/cypriniformes.jsonld | 14 ------ .../biologicalOrder/didelphimorphia.jsonld | 16 ------ instances/biologicalOrder/nudibranchia.jsonld | 16 ------ instances/biologicalOrder/primates.jsonld | 14 ------ instances/biologicalOrder/rodentia.jsonld | 16 ------ instances/biologicalSex/female.jsonld | 14 ------ instances/biologicalSex/hermaphrodite.jsonld | 16 ------ instances/biologicalSex/male.jsonld | 14 ------ instances/biologicalSex/notDetectable.jsonld | 14 ------ instances/breedingType/coisogenic.jsonld | 14 ------ instances/breedingType/congenic.jsonld | 14 ------ instances/breedingType/hybrid.jsonld | 14 ------ instances/breedingType/inbred.jsonld | 14 ------ instances/breedingType/outbred.jsonld | 14 ------ instances/breedingType/selectiveInbred.jsonld | 14 ------ instances/cellCultureType/primary.jsonld | 14 ------ instances/cellCultureType/secondary.jsonld | 14 ------ .../D1ReceptorExpressingNeuron.jsonld | 24 --------- .../D2ReceptorExpressingNeuron.jsonld | 24 --------- instances/cellType/PurkinjeCell.jsonld | 23 --------- .../cellType/aromataseExpressingNeuron.jsonld | 18 ------- instances/cellType/astrocyte.jsonld | 16 ------ instances/cellType/basketCell.jsonld | 14 ------ .../cellType/calbindinExpressingNeuron.jsonld | 24 --------- .../calretininExpressingNeuron.jsonld | 20 -------- .../cellType/cerebellarInterneuron.jsonld | 14 ------ .../cellType/cerebellumBasketCell.jsonld | 16 ------ instances/cellType/cerebellumGolgiCell.jsonld | 20 -------- .../cellType/cerebellumGranuleCell.jsonld | 18 ------- .../cellType/cerebellumStellateNeuron.jsonld | 18 ------- .../cholecystokininExpressingNeuron.jsonld | 20 -------- ...neAcetyltransferaseExpressingNeuron.jsonld | 24 --------- .../cellType/cholinergicInterneuron.jsonld | 16 ------ instances/cellType/cholinergicNeuron.jsonld | 16 ------ instances/cellType/corticalBasketCell.jsonld | 19 ------- instances/cellType/corticalInterneuron.jsonld | 14 ------ instances/cellType/dopaminergicNeuron.jsonld | 16 ------ instances/cellType/excitatoryNeuron.jsonld | 16 ------ .../cellType/fastSpikingInterneuron.jsonld | 16 ------ instances/cellType/glialCell.jsonld | 16 ------ instances/cellType/granuleNeuron.jsonld | 16 ------ .../hippocampusCA1PyramidalNeuron.jsonld | 19 ------- instances/cellType/inhibitoryNeuron.jsonld | 16 ------ instances/cellType/interneuron.jsonld | 14 ------ instances/cellType/macroglialCell.jsonld | 14 ------ instances/cellType/microglialCell.jsonld | 14 ------ instances/cellType/motorNeuron.jsonld | 14 ------ .../neocortexLayer2-3PyramidalNeuron.jsonld | 21 -------- ...eocortexLayer5TuftedPyramidalNeuron.jsonld | 20 -------- .../neostriatumCholinergicInterneuron.jsonld | 23 --------- ...neostriatumDirectPathwaySpinyNeuron.jsonld | 20 -------- ...ostriatumIndirectPathwaySpinyNeuron.jsonld | 20 -------- instances/cellType/neuron.jsonld | 17 ------- .../neuropeptideYExpressingNeuron.jsonld | 24 --------- ...nitricOxideSynthaseExpressingNeuron.jsonld | 24 --------- .../parvalbuminExpressingNeuron.jsonld | 20 -------- instances/cellType/potmitoticCell.jsonld | 14 ------ instances/cellType/progenitorCell.jsonld | 14 ------ instances/cellType/pyramidalNeuron.jsonld | 16 ------ instances/cellType/sensoryNeuron.jsonld | 14 ------ .../somatostatinExpressingNeuron.jsonld | 22 --------- instances/cellType/spinalInterneuron.jsonld | 14 ------ instances/cellType/spinyNeuron.jsonld | 14 ------ instances/cellType/stellateNeuron.jsonld | 14 ------ instances/cellType/striatalInterneuron.jsonld | 14 ------ .../cellType/striatumMediumSpinyNeuron.jsonld | 19 ------- .../cellType/vascularEndothelialCell.jsonld | 16 ------ .../cellType/vascularSmoothMuscleCell.jsonld | 17 ------- ...veIntestinalPeptideExpressingNeuron.jsonld | 20 -------- instances/chemicalMixtureType/colloid.jsonld | 14 ------ instances/chemicalMixtureType/solution.jsonld | 14 ------ .../chemicalMixtureType/suspension.jsonld | 14 ------ .../matplotlib.colormaps.Accent.jsonld | 16 ------ .../matplotlib.colormaps.Blues.jsonld | 16 ------ .../colormap/matplotlib.colormaps.BrBG.jsonld | 16 ------ .../colormap/matplotlib.colormaps.BuGn.jsonld | 16 ------ .../colormap/matplotlib.colormaps.BuPu.jsonld | 16 ------ .../matplotlib.colormaps.CMRmap.jsonld | 16 ------ .../matplotlib.colormaps.Dark2.jsonld | 16 ------ .../colormap/matplotlib.colormaps.GnBu.jsonld | 16 ------ .../matplotlib.colormaps.Greens.jsonld | 16 ------ .../matplotlib.colormaps.Greys.jsonld | 16 ------ .../colormap/matplotlib.colormaps.OrRd.jsonld | 16 ------ .../matplotlib.colormaps.Oranges.jsonld | 16 ------ .../colormap/matplotlib.colormaps.PRGn.jsonld | 16 ------ .../matplotlib.colormaps.Paired.jsonld | 16 ------ .../matplotlib.colormaps.Pastel1.jsonld | 16 ------ .../matplotlib.colormaps.Pastel2.jsonld | 16 ------ .../colormap/matplotlib.colormaps.PiYG.jsonld | 16 ------ .../colormap/matplotlib.colormaps.PuBu.jsonld | 16 ------ .../matplotlib.colormaps.PuBuGn.jsonld | 16 ------ .../colormap/matplotlib.colormaps.PuOr.jsonld | 16 ------ .../colormap/matplotlib.colormaps.PuRd.jsonld | 16 ------ .../matplotlib.colormaps.Purples.jsonld | 16 ------ .../colormap/matplotlib.colormaps.RdBu.jsonld | 16 ------ .../colormap/matplotlib.colormaps.RdGy.jsonld | 16 ------ .../colormap/matplotlib.colormaps.RdPu.jsonld | 16 ------ .../matplotlib.colormaps.RdYlBu.jsonld | 16 ------ .../matplotlib.colormaps.RdYlGn.jsonld | 16 ------ .../colormap/matplotlib.colormaps.Reds.jsonld | 16 ------ .../colormap/matplotlib.colormaps.Set1.jsonld | 16 ------ .../colormap/matplotlib.colormaps.Set2.jsonld | 16 ------ .../colormap/matplotlib.colormaps.Set3.jsonld | 16 ------ .../matplotlib.colormaps.Spectral.jsonld | 16 ------ .../matplotlib.colormaps.Wistia.jsonld | 16 ------ .../colormap/matplotlib.colormaps.YlGn.jsonld | 16 ------ .../matplotlib.colormaps.YlGnBu.jsonld | 16 ------ .../matplotlib.colormaps.YlOrBr.jsonld | 16 ------ .../matplotlib.colormaps.YlOrRd.jsonld | 16 ------ .../matplotlib.colormaps.afmhot.jsonld | 16 ------ .../matplotlib.colormaps.autumn.jsonld | 16 ------ .../matplotlib.colormaps.binary.jsonld | 16 ------ .../colormap/matplotlib.colormaps.bone.jsonld | 16 ------ .../colormap/matplotlib.colormaps.brg.jsonld | 16 ------ .../colormap/matplotlib.colormaps.bwr.jsonld | 16 ------ .../matplotlib.colormaps.cividis.jsonld | 16 ------ .../colormap/matplotlib.colormaps.cool.jsonld | 16 ------ .../matplotlib.colormaps.coolwarm.jsonld | 16 ------ .../matplotlib.colormaps.copper.jsonld | 16 ------ .../matplotlib.colormaps.cubehelix.jsonld | 16 ------ .../colormap/matplotlib.colormaps.flag.jsonld | 16 ------ .../matplotlib.colormaps.gist_earth.jsonld | 16 ------ .../matplotlib.colormaps.gist_gray.jsonld | 16 ------ .../matplotlib.colormaps.gist_heat.jsonld | 16 ------ .../matplotlib.colormaps.gist_ncar.jsonld | 16 ------ .../matplotlib.colormaps.gist_rainbow.jsonld | 16 ------ .../matplotlib.colormaps.gist_stern.jsonld | 16 ------ .../matplotlib.colormaps.gist_yarg.jsonld | 16 ------ .../matplotlib.colormaps.gnuplot.jsonld | 16 ------ .../matplotlib.colormaps.gnuplot2.jsonld | 16 ------ .../colormap/matplotlib.colormaps.gray.jsonld | 16 ------ .../colormap/matplotlib.colormaps.hot.jsonld | 16 ------ .../colormap/matplotlib.colormaps.hsv.jsonld | 16 ------ .../matplotlib.colormaps.inferno.jsonld | 16 ------ .../colormap/matplotlib.colormaps.jet.jsonld | 16 ------ .../matplotlib.colormaps.magma.jsonld | 16 ------ .../matplotlib.colormaps.nipy_spectral.jsonld | 16 ------ .../matplotlib.colormaps.ocean.jsonld | 16 ------ .../colormap/matplotlib.colormaps.pink.jsonld | 16 ------ .../matplotlib.colormaps.plasma.jsonld | 16 ------ .../matplotlib.colormaps.prism.jsonld | 16 ------ .../matplotlib.colormaps.rainbow.jsonld | 16 ------ .../matplotlib.colormaps.seismic.jsonld | 16 ------ .../matplotlib.colormaps.spring.jsonld | 16 ------ .../matplotlib.colormaps.summer.jsonld | 16 ------ .../matplotlib.colormaps.tab10.jsonld | 16 ------ .../matplotlib.colormaps.tab20.jsonld | 16 ------ .../matplotlib.colormaps.tab20b.jsonld | 16 ------ .../matplotlib.colormaps.tab20c.jsonld | 16 ------ .../matplotlib.colormaps.terrain.jsonld | 16 ------ .../matplotlib.colormaps.turbo.jsonld | 16 ------ .../matplotlib.colormaps.twilight.jsonld | 16 ------ ...tplotlib.colormaps.twilight_shifted.jsonld | 16 ------ .../matplotlib.colormaps.viridis.jsonld | 16 ------ .../matplotlib.colormaps.winter.jsonld | 16 ------ .../contributionType/coordination.jsonld | 14 ------ .../contributionType/dataCollection.jsonld | 14 ------ .../contributionType/dataManagement.jsonld | 14 ------ .../contributionType/dataProcessing.jsonld | 14 ------ .../informationTechnologySupport.jsonld | 14 ------ .../laboratoryAssistance.jsonld | 14 ------ instances/contributionType/marketing.jsonld | 14 ------ .../metadataManagement.jsonld | 14 ------ .../clearedSkullCranialWindow.jsonld | 14 ------ .../thinnedSkullCranialWindow.jsonld | 14 ------ .../transcranialWindow.jsonld | 14 ------ .../GRINLensBasedCranialWindow.jsonld | 14 ------ .../crystallineBasedCranialWindow.jsonld | 14 ------ .../glassCoverslipCranialWindow.jsonld | 14 ------ .../polymerBasedCranialWindow.jsonld | 14 ------ .../prismBasedCranialWindow.jsonld | 14 ------ instances/criteriaQualityType/asserted.jsonld | 14 ------ .../criteriaQualityType/processive.jsonld | 14 ------ instances/dataType/3DComputerGraphic.jsonld | 14 ------ instances/dataType/associativeArray.jsonld | 16 ------ instances/dataType/eventSequence.jsonld | 14 ------ instances/dataType/list.jsonld | 14 ------ instances/dataType/matrix.jsonld | 14 ------ instances/dataType/rasterGraphic.jsonld | 17 ------- instances/dataType/scalar.jsonld | 14 ------ instances/dataType/table.jsonld | 16 ------ instances/dataType/timeSeries.jsonld | 16 ------ instances/dataType/vectorGraphic.jsonld | 16 ------ instances/dataType/voxelData.jsonld | 14 ------ instances/deviceType/CTscanner.jsonld | 18 ------- instances/deviceType/MRIscanner.jsonld | 16 ------ .../deviceType/electronicAmplifier.jsonld | 17 ------- instances/deviceType/microscope.jsonld | 14 ------ instances/deviceType/microtome.jsonld | 14 ------ .../deviceType/vibratingMicrotome.jsonld | 16 ------ .../chiSquaredStatistic.jsonld | 16 ------ .../kolmogorovSmirnovStatistic.jsonld | 16 ------ .../kullbackLeiblerDivergence.jsonld | 16 ------ .../differenceMeasure/meanSquaredError.jsonld | 14 ------ .../differenceMeasure/t_statistic.jsonld | 14 ------ instances/differenceMeasure/z_score.jsonld | 14 ------ instances/disease/acquiredBlindness.jsonld | 14 ------ instances/disease/alzheimersDisease.jsonld | 21 -------- .../disease/autismSpectrumDisorder.jsonld | 14 ------ instances/disease/benignNeoplasm.jsonld | 17 ------- .../disease/cellProliferationDisorder.jsonld | 14 ------ instances/disease/cerebralAtrophy.jsonld | 19 ------- instances/disease/congenitalBlindness.jsonld | 14 ------ .../disease/diabetesMellitusType2.jsonld | 20 -------- .../disease/disorderOfConsciousness.jsonld | 17 ------- instances/disease/epilepsy.jsonld | 14 ------ instances/disease/essentialTremor.jsonld | 18 ------- .../disease/focalCerebralIschemia.jsonld | 17 ------- instances/disease/fragileXsyndrome.jsonld | 14 ------ instances/disease/glioma.jsonld | 21 -------- instances/disease/malignantNeoplasm.jsonld | 16 ------ instances/disease/meningioma.jsonld | 20 -------- instances/disease/mentalDisorder.jsonld | 19 ------- .../disease/minimallyConsciousState.jsonld | 16 ------ instances/disease/multipleSclerosis.jsonld | 17 ------- instances/disease/parkinsonsDisease.jsonld | 14 ------ instances/disease/stroke.jsonld | 20 -------- instances/disease/tremor.jsonld | 14 ------ instances/disease/trigeminalNeuralgia.jsonld | 23 --------- .../unresponsiveWakefulnessSyndrome.jsonld | 18 ------- .../disease/williamsBeurenSyndrome.jsonld | 14 ------ .../alzheimersDiseaseModel.jsonld | 14 ------ .../autismSpectrumDisorderModel.jsonld | 14 ------ instances/diseaseModel/epilepsyModel.jsonld | 14 ------ .../diseaseModel/fragileXsyndromeModel.jsonld | 14 ------ .../huntingtonsDiseaseModel.jsonld | 14 ------ .../parkinsonsDiseaseModel.jsonld | 14 ------ instances/diseaseModel/strokeModel.jsonld | 20 -------- .../williamsBeurenSyndromeModel.jsonld | 14 ------ instances/educationalLevel/advanced.jsonld | 14 ------ instances/educationalLevel/beginner.jsonld | 14 ------ .../educationalLevel/intermediate.jsonld | 14 ------ .../directCurrent.jsonld | 16 ------ .../ethicsAssessment/EUCompliant+.jsonld | 14 ------ instances/ethicsAssessment/EUCompliant.jsonld | 14 ------ instances/ethicsAssessment/notRequired.jsonld | 14 ------ instances/experimentalApproach/anatomy.jsonld | 16 ------ .../experimentalApproach/behavior.jsonld | 16 ------ .../biochemicalApproach.jsonld | 16 ------ .../experimentalApproach/biophysics.jsonld | 14 ------ .../experimentalApproach/cellBiology.jsonld | 16 ------ .../cellMorphology.jsonld | 14 ------ .../cellPopulationCharacterization.jsonld | 14 ------ .../cellPopulationImaging.jsonld | 14 ------ .../cellPopulationManipulation.jsonld | 14 ------ .../experimentalApproach/chemogenetics.jsonld | 14 ------ .../clinicalResearch.jsonld | 16 ------ .../computationalModeling.jsonld | 14 ------ .../culturingApproach.jsonld | 16 ------ .../developmentalBiology.jsonld | 16 ------ instances/experimentalApproach/ecology.jsonld | 16 ------ .../electrophysiology.jsonld | 14 ------ .../experimentalApproach/epidemiology.jsonld | 16 ------ .../experimentalApproach/epigenomics.jsonld | 14 ------ .../experimentalApproach/ethology.jsonld | 16 ------ .../evolutionaryBiology.jsonld | 16 ------ .../experimentalApproach/expression.jsonld | 16 ------ .../expressionCharacterization.jsonld | 14 ------ .../experimentalApproach/genetics.jsonld | 14 ------ .../experimentalApproach/genomics.jsonld | 14 ------ .../experimentalApproach/histology.jsonld | 16 ------ .../experimentalApproach/informatics.jsonld | 14 ------ .../experimentalApproach/metabolomics.jsonld | 14 ------ .../experimentalApproach/microscopy.jsonld | 14 ------ .../experimentalApproach/morphology.jsonld | 16 ------ .../multimodalResearch.jsonld | 16 ------ .../experimentalApproach/multiomics.jsonld | 14 ------ .../neuralConnectivity.jsonld | 14 ------ .../experimentalApproach/neuroimaging.jsonld | 14 ------ instances/experimentalApproach/omics.jsonld | 14 ------ .../experimentalApproach/optogenetics.jsonld | 14 ------ .../experimentalApproach/pharmacology.jsonld | 14 ------ .../experimentalApproach/physiology.jsonld | 16 ------ .../experimentalApproach/proteomics.jsonld | 14 ------ .../experimentalApproach/radiology.jsonld | 14 ------ .../spatialTranscriptomics.jsonld | 14 ------ .../transcriptomics.jsonld | 14 ------ .../behavioralProtocol.jsonld | 14 ------ .../fileBundleGrouping/coordinateSpace.jsonld | 14 ------ instances/fileBundleGrouping/protocol.jsonld | 14 ------ .../fileBundleGrouping/studyTarget.jsonld | 14 ------ instances/fileBundleGrouping/subject.jsonld | 14 ------ .../fileBundleGrouping/subjectGroup.jsonld | 14 ------ instances/fileBundleGrouping/technique.jsonld | 14 ------ .../fileBundleGrouping/tissueSample.jsonld | 14 ------ .../tissueSampleCollection.jsonld | 14 ------ instances/fileRepositoryType/ftp.jsonld | 16 ------ instances/fileRepositoryType/git.jsonld | 21 -------- instances/fileRepositoryType/gitAnnex.jsonld | 14 ------ instances/fileRepositoryType/gpfs.jsonld | 14 ------ instances/fileRepositoryType/s3.jsonld | 17 ------- instances/fileRepositoryType/seafile.jsonld | 14 ------ instances/fileRepositoryType/swift.jsonld | 14 ------ instances/fileUsageRole/dataDescriptor.jsonld | 14 ------ instances/fileUsageRole/logo.jsonld | 14 ------ instances/fileUsageRole/preview.jsonld | 14 ------ instances/fileUsageRole/screenshot.jsonld | 14 ------ .../conditionalKnockinReady.jsonld | 14 ------ .../conditionalKnockoutReady.jsonld | 14 ------ .../geneticStrainType/conditionalReady.jsonld | 14 ------ instances/geneticStrainType/knockin.jsonld | 14 ------ instances/geneticStrainType/knockout.jsonld | 14 ------ instances/geneticStrainType/transgenic.jsonld | 14 ------ instances/geneticStrainType/wildtype.jsonld | 14 ------ .../bitterSubstance.jsonld | 14 ------ .../saltySubstance.jsonld | 14 ------ .../sourSubstance.jsonld | 14 ------ .../sweetSubstance.jsonld | 14 ------ .../handedness/ambidextrousHandedness.jsonld | 14 ------ .../handedness/ambilevousHandedness.jsonld | 14 ------ instances/handedness/leftHandedness.jsonld | 14 ------ instances/handedness/mixedHandedness.jsonld | 14 ------ instances/handedness/rightHandedness.jsonld | 14 ------ instances/language/dutch.jsonld | 14 ------ instances/language/english.jsonld | 14 ------ instances/language/french.jsonld | 14 ------ instances/language/german.jsonld | 14 ------ instances/language/greek.jsonld | 14 ------ instances/language/italian.jsonld | 14 ------ instances/language/norwegian.jsonld | 14 ------ instances/language/spanish.jsonld | 14 ------ instances/language/swedish.jsonld | 14 ------ instances/laterality/left.jsonld | 14 ------ instances/laterality/right.jsonld | 14 ------ .../developerDocumentation.jsonld | 14 ------ .../interactiveTutorial.jsonld | 14 ------ .../learningResourceType/slideDeck.jsonld | 17 ------- .../userDocumentation.jsonld | 14 ------ .../videoPresentation.jsonld | 14 ------ .../learningResourceType/videoTutorial.jsonld | 14 ------ .../chlorideReversalPotential.jsonld | 14 ------ .../compensationCurrent.jsonld | 14 ------ .../measuredQuantity/holdingPotential.jsonld | 16 ------ .../measuredQuantity/inputResistance.jsonld | 16 ------ .../liquidJunctionPotential.jsonld | 14 ------ .../measuredQuantity/membranePotential.jsonld | 14 ------ .../measuredQuantity/sealResistance.jsonld | 14 ------ .../measuredQuantity/seriesResistance.jsonld | 17 ------- .../commonDataElements.jsonld | 14 ------ .../dataRepositoryModel.jsonld | 14 ------ .../graphMetadataModel.jsonld | 14 ------ .../relationalMetadataModel.jsonld | 14 ------ .../modelAbstractionLevel/algorithm.jsonld | 14 ------ .../cognitiveModelling.jsonld | 14 ------ .../populationModelling-neuralField.jsonld | 14 ------ .../populationModelling-neuralMass.jsonld | 14 ------ .../populationModelling.jsonld | 14 ------ .../proteinStructure.jsonld | 14 ------ .../modelAbstractionLevel/rateNeurons.jsonld | 14 ------ .../spikingNeurons-biophysical.jsonld | 14 ------ .../spikingNeurons-pointNeuron.jsonld | 14 ------ .../spikingNeurons.jsonld | 14 ------ .../statisticalModel.jsonld | 14 ------ .../systemsBiology-continuous.jsonld | 14 ------ .../systemsBiology-discrete.jsonld | 14 ------ .../systemsBiology-fluxBalance.jsonld | 14 ------ .../systemsBiology.jsonld | 14 ------ .../modelScope/network-brainRegion.jsonld | 14 ------ .../modelScope/network-microcircuit.jsonld | 14 ------ .../modelScope/network-wholeBrain.jsonld | 14 ------ instances/modelScope/network.jsonld | 14 ------ instances/modelScope/singleCell.jsonld | 14 ------ .../modelScope/subcellular-ionChannel.jsonld | 14 ------ .../modelScope/subcellular-molecular.jsonld | 14 ------ .../modelScope/subcellular-signalling.jsonld | 14 ------ instances/modelScope/subcellular-spine.jsonld | 14 ------ instances/modelScope/subcellular.jsonld | 14 ------ ...hyl)-1-piperazineEthanesulfonicAcid.jsonld | 17 ------- .../molecularEntity/5-HT1AReceptor.jsonld | 19 ------- .../molecularEntity/5-HT1BReceptor.jsonld | 19 ------- .../molecularEntity/5-HT2AReceptor.jsonld | 19 ------- .../molecularEntity/5-HT2Receptor.jsonld | 17 ------- .../molecularEntity/5-HT4Receptor.jsonld | 19 ------- .../molecularEntity/5-HTTransporter.jsonld | 18 ------- ...ro-1,4-dihydroquinoxaline-2,3-dione.jsonld | 18 ------- instances/molecularEntity/A1Receptor.jsonld | 17 ------- instances/molecularEntity/A2AReceptor.jsonld | 18 ------- instances/molecularEntity/AMPAReceptor.jsonld | 21 -------- .../molecularEntity/AlexaFluor594.jsonld | 16 ------ .../molecularEntity/Beta-Amyloid40.jsonld | 18 ------- instances/molecularEntity/D1Receptor.jsonld | 21 -------- instances/molecularEntity/D2Receptor.jsonld | 21 -------- instances/molecularEntity/DAB.jsonld | 16 ------ .../molecularEntity/Fluoro-Emerald.jsonld | 17 ------- instances/molecularEntity/Fluoro-Gold.jsonld | 17 ------- instances/molecularEntity/Fluoro-Ruby.jsonld | 17 ------- .../molecularEntity/GABA-AReceptor.jsonld | 18 ------- instances/molecularEntity/GABA-A_BZ.jsonld | 22 --------- .../molecularEntity/GABA-BReceptor.jsonld | 18 ------- instances/molecularEntity/GABAReceptor.jsonld | 17 ------- .../JNKMapKinaseScaffoldProtein2.jsonld | 21 -------- instances/molecularEntity/M1Receptor.jsonld | 22 --------- instances/molecularEntity/M2Receptor.jsonld | 21 -------- instances/molecularEntity/M3Receptor.jsonld | 21 -------- instances/molecularEntity/MagnesiumATP.jsonld | 16 ------ instances/molecularEntity/NMDAReceptor.jsonld | 20 -------- .../molecularEntity/acetylcholine.jsonld | 16 ------ .../molecularEntity/alpha-1Receptor.jsonld | 20 -------- .../molecularEntity/alpha-2Receptor.jsonld | 20 -------- .../alpha-4Beta-2Receptor.jsonld | 20 -------- .../molecularEntity/anterogradeTracer.jsonld | 14 ------ instances/molecularEntity/biomarker.jsonld | 14 ------ .../biotinylatedDextranAmine.jsonld | 19 ------- .../brainDerivedNeurotrophicFactor.jsonld | 17 ------- instances/molecularEntity/c-FOS.jsonld | 23 --------- instances/molecularEntity/calbindin.jsonld | 20 -------- .../calciumCalmodulinProteinKinaseII.jsonld | 18 ------- ...CalmodulinProteinKinaseIIAlphaChain.jsonld | 25 ---------- .../molecularEntity/calciumChloride.jsonld | 19 ------- instances/molecularEntity/calretinin.jsonld | 20 -------- .../molecularEntity/carbonDioxide.jsonld | 22 --------- .../molecularEntity/cholecystokinin.jsonld | 16 ------ instances/molecularEntity/choline.jsonld | 20 -------- .../cholineAcetyltransferase.jsonld | 17 ------- .../cyclicAdenosineMonophosphate.jsonld | 20 -------- .../molecularEntity/diboronTrioxide.jsonld | 21 -------- .../molecularEntity/dimethylSulfoxide.jsonld | 49 ------------------- instances/molecularEntity/dinitrogen.jsonld | 18 ------- instances/molecularEntity/dioxygen.jsonld | 21 -------- instances/molecularEntity/dopamine.jsonld | 20 -------- .../dopamineTransporter.jsonld | 17 ------- instances/molecularEntity/dynorphin.jsonld | 16 ------ instances/molecularEntity/edeticAcid.jsonld | 31 ------------ instances/molecularEntity/egtazicAcid.jsonld | 22 --------- instances/molecularEntity/enkephalin.jsonld | 16 ------ instances/molecularEntity/epibatidine.jsonld | 14 ------ instances/molecularEntity/ethanol.jsonld | 28 ----------- .../excitatoryAminoAcidTransporter.jsonld | 16 ------ .../excitatoryAminoAcidTransporter1.jsonld | 18 ------- .../excitatoryAminoAcidTransporter2.jsonld | 20 -------- .../excitatoryAminoAcidTransporter3.jsonld | 16 ------ .../excitatoryAminoAcidTransporter4.jsonld | 16 ------ .../excitatoryAminoAcidTransporter5.jsonld | 16 ------ instances/molecularEntity/flumazenil.jsonld | 14 ------ .../fluorescentMicrospheres.jsonld | 14 ------ instances/molecularEntity/formaldehyde.jsonld | 24 --------- instances/molecularEntity/gabazine.jsonld | 16 ------ instances/molecularEntity/galanin.jsonld | 16 ------ instances/molecularEntity/gluconicAcid.jsonld | 18 ------- instances/molecularEntity/glucose.jsonld | 19 ------- instances/molecularEntity/glutamate.jsonld | 19 ------- .../glutamateTransporter.jsonld | 16 ------ instances/molecularEntity/glycerol.jsonld | 21 -------- .../glycineTransporter2.jsonld | 18 ------- instances/molecularEntity/growthFactor.jsonld | 16 ------ instances/molecularEntity/halothane.jsonld | 26 ---------- instances/molecularEntity/histamine.jsonld | 14 ------ .../insulinLikeGrowthFactor1.jsonld | 22 --------- instances/molecularEntity/intrabody.jsonld | 14 ------ .../ionotropicGlutamateReceptor.jsonld | 16 ------ instances/molecularEntity/iperoxo.jsonld | 16 ------ instances/molecularEntity/iron.jsonld | 16 ------ instances/molecularEntity/isoflurane.jsonld | 19 ------- .../molecularEntity/kainateReceptor.jsonld | 20 -------- .../kallikrein-relatedPeptidase8.jsonld | 18 ------- instances/molecularEntity/ketamine.jsonld | 25 ---------- .../molecularEntity/luciferYellow.jsonld | 16 ------ .../molecularEntity/magnesiumChloride.jsonld | 16 ------ .../molecularEntity/magnesiumSulfate.jsonld | 33 ------------- instances/molecularEntity/medetomidine.jsonld | 14 ------ .../metabotropicGlutamateReceptor.jsonld | 19 ------- .../metabotropicGlutamateReceptor1.jsonld | 19 ------- .../metabotropicGlutamateReceptor2.jsonld | 19 ------- .../metabotropicGlutamateReceptor3.jsonld | 19 ------- .../metabotropicGlutamateReceptor5.jsonld | 19 ------- instances/molecularEntity/methanol.jsonld | 28 ----------- .../monosodiumPhosphate.jsonld | 23 --------- instances/molecularEntity/muscimol.jsonld | 17 ------- instances/molecularEntity/neurobiotin.jsonld | 14 ------ instances/molecularEntity/neuroligin-3.jsonld | 19 ------- .../neuronalNuclearAntigen.jsonld | 16 ------ .../molecularEntity/neurotrophicFactor.jsonld | 16 ------ instances/molecularEntity/nickel.jsonld | 16 ------ instances/molecularEntity/parvalbumin.jsonld | 17 ------- .../molecularEntity/pentobarbital.jsonld | 30 ------------ .../pentobarbitalSodium.jsonld | 16 ------ .../molecularEntity/potassiumChloride.jsonld | 19 ------- .../molecularEntity/potassiumGluconate.jsonld | 13 ----- instances/molecularEntity/propofol.jsonld | 21 -------- .../molecularEntity/siliconDioxide.jsonld | 23 --------- .../molecularEntity/silverAmmonium.jsonld | 14 ------ .../molecularEntity/silverNitrate.jsonld | 19 ------- .../molecularEntity/sodiumBicarbonate.jsonld | 24 --------- .../molecularEntity/sodiumChloride.jsonld | 22 --------- instances/molecularEntity/sucrose.jsonld | 21 -------- instances/molecularEntity/tungsten.jsonld | 16 ------ .../vesicularGlutamateTransporter.jsonld | 16 ------ .../vesicularGlutamateTransporter1.jsonld | 16 ------ .../vesicularGlutamateTransporter2.jsonld | 16 ------ .../vesicularGlutamateTransporter3.jsonld | 18 ------- instances/molecularEntity/water.jsonld | 29 ----------- .../olfactoryStimulusType/floralOdor.jsonld | 14 ------ instances/operatingDevice/desktop.jsonld | 14 ------ .../operatingDevice/embeddedSystem.jsonld | 14 ------ .../highPerformanceComputer.jsonld | 14 ------ instances/operatingDevice/mobile.jsonld | 14 ------ .../neuromorphicComputer.jsonld | 14 ------ instances/operatingDevice/server.jsonld | 14 ------ instances/operatingDevice/web.jsonld | 14 ------ instances/operatingSystem/Android.jsonld | 14 ------ instances/operatingSystem/Linux.jsonld | 14 ------ instances/operatingSystem/MacOS.jsonld | 14 ------ instances/operatingSystem/Solaris.jsonld | 14 ------ instances/operatingSystem/Unix.jsonld | 14 ------ instances/operatingSystem/Windows.jsonld | 14 ------ instances/operatingSystem/WindowsPhone.jsonld | 14 ------ instances/operatingSystem/iOS.jsonld | 14 ------ .../platformIndependent.jsonld | 14 ------ .../opticalStimulusType/infraredLight.jsonld | 14 ------ instances/organ/brain.jsonld | 14 ------ instances/organ/heart.jsonld | 17 ------- instances/organ/liver.jsonld | 14 ------ instances/organ/muscle.jsonld | 14 ------ instances/organ/skin.jsonld | 17 ------- .../organismSubstance/arterialBlood.jsonld | 18 ------- instances/organismSubstance/blood.jsonld | 17 ------- .../organismSubstance/venousBlood.jsonld | 18 ------- .../cardiovascularSystem.jsonld | 14 ------ .../centralNervousSystem.jsonld | 17 ------- .../organismSystem/cholinergicSystem.jsonld | 16 ------ .../organismSystem/digestiveSystem.jsonld | 14 ------ .../organismSystem/gabaergicSystem.jsonld | 16 ------ .../organismSystem/glutamatergicSystem.jsonld | 14 ------ .../musculoskeletalSystem.jsonld | 16 ------ .../organismSystem/noradrenergicSystem.jsonld | 14 ------ .../organismSystem/serotonergicSystem.jsonld | 14 ------ .../organismSystem/vascularSystem.jsonld | 14 ------ .../cellAttachedPatch.jsonld | 14 ------ .../patchClampVariation/insideOutPatch.jsonld | 14 ------ .../patchClampVariation/loosePatch.jsonld | 14 ------ .../outsideOutPatch.jsonld | 14 ------ .../perforatedPatch.jsonld | 14 ------ .../patchClampVariation/wholeCellPatch.jsonld | 16 ------ instances/preparationType/exVivo.jsonld | 16 ------ instances/preparationType/inSilico.jsonld | 14 ------ instances/preparationType/inSitu.jsonld | 16 ------ instances/preparationType/inUtero.jsonld | 16 ------ instances/preparationType/inVitro.jsonld | 16 ------ instances/preparationType/inVivo.jsonld | 16 ------ .../controlledAccess.jsonld | 14 ------ .../productAccessibility/freeAccess.jsonld | 14 ------ .../restrictedAccess.jsonld | 14 ------ .../productAccessibility/underEmbargo.jsonld | 14 ------ instances/programmingLanguage/AMPL.jsonld | 16 ------ instances/programmingLanguage/Bash.jsonld | 14 ------ instances/programmingLanguage/C#.jsonld | 14 ------ instances/programmingLanguage/C++.jsonld | 14 ------ instances/programmingLanguage/C.jsonld | 14 ------ instances/programmingLanguage/Fortran.jsonld | 14 ------ instances/programmingLanguage/GLSL.jsonld | 14 ------ instances/programmingLanguage/HTML.jsonld | 14 ------ instances/programmingLanguage/Java.jsonld | 14 ------ .../programmingLanguage/JavaScript.jsonld | 14 ------ instances/programmingLanguage/MATLAB.jsonld | 14 ------ instances/programmingLanguage/PHP.jsonld | 14 ------ instances/programmingLanguage/Pascal.jsonld | 14 ------ instances/programmingLanguage/Python.jsonld | 14 ------ instances/programmingLanguage/R.jsonld | 14 ------ instances/programmingLanguage/Ruby.jsonld | 14 ------ instances/programmingLanguage/Scala.jsonld | 14 ------ instances/programmingLanguage/T-SQL.jsonld | 14 ------ .../programmingLanguage/TypeScript.jsonld | 14 ------ instances/programmingLanguage/shell.jsonld | 14 ------ .../hasIntersectionWith.jsonld | 14 ------ .../qualitativeOverlap/isHomologousTo.jsonld | 14 ------ .../qualitativeOverlap/isIdenticalTo.jsonld | 14 ------ .../qualitativeOverlap/isSubsetOf.jsonld | 14 ------ .../qualitativeOverlap/isSupersetOf.jsonld | 14 ------ instances/semanticDataType/derivedData.jsonld | 14 ------ .../semanticDataType/experimentalData.jsonld | 14 ------ instances/semanticDataType/rawData.jsonld | 14 ------ .../semanticDataType/simulatedData.jsonld | 14 ------ .../AllenInstituteCellTypesDataPortal.jsonld | 14 ------ instances/service/BlueNaaS.jsonld | 16 ------ instances/service/CollaboratoryLab.jsonld | 14 ------ instances/service/CollaboratoryWiki.jsonld | 14 ------ instances/service/KGSearchUI.jsonld | 21 -------- instances/service/LocaliZoom.jsonld | 14 ------ instances/service/ModelCatalog.jsonld | 14 ------ instances/service/ModelDB.jsonld | 14 ------ instances/service/Multi-Image-OSd.jsonld | 16 ------ instances/service/NeuroMorpho.jsonld | 14 ------ instances/service/Neuroglancer.jsonld | 14 ------ instances/service/Zenodo.jsonld | 14 ------ instances/service/siibraExplorer.jsonld | 14 ------ instances/setupType/acquisitionSystem.jsonld | 14 ------ instances/setupType/computingSystem.jsonld | 14 ------ instances/setupType/stimulationSystem.jsonld | 14 ------ .../application.jsonld | 14 ------ .../library.jsonld | 14 ------ .../middleware.jsonld | 14 ------ .../softwareApplicationCategory/module.jsonld | 14 ------ .../notebook.jsonld | 14 ------ .../softwareApplicationCategory/plugin.jsonld | 14 ------ .../3DGeometryDataTypes.jsonld | 14 ------ .../softwareFeature/3DScalarDataTypes.jsonld | 14 ------ .../softwareFeature/3DVectorDataTypes.jsonld | 14 ------ .../softwareFeature/augmentedReality.jsonld | 14 ------ .../commandlineInterface.jsonld | 14 ------ instances/softwareFeature/control.jsonld | 14 ------ .../softwareFeature/dataAcquisition.jsonld | 14 ------ .../softwareFeature/dataProcessing.jsonld | 14 ------ .../softwareFeature/desktopEnvironment.jsonld | 14 ------ .../softwareFeature/graphDataTypes.jsonld | 14 ------ .../graphicalUserInterface.jsonld | 14 ------ .../heterogeneousArchitecture.jsonld | 14 ------ .../interactiveAnalysis.jsonld | 14 ------ .../softwareFeature/matrixDataTypes.jsonld | 14 ------ .../softwareFeature/metadataDataTypes.jsonld | 14 ------ instances/softwareFeature/mobileDevice.jsonld | 14 ------ instances/softwareFeature/modelling.jsonld | 14 ------ .../parallelProgramming.jsonld | 14 ------ .../performanceMeasurement.jsonld | 14 ------ .../positionalDataTypes.jsonld | 14 ------ .../presentationVisualisation.jsonld | 14 ------ instances/softwareFeature/profiling.jsonld | 14 ------ instances/softwareFeature/provenance.jsonld | 14 ------ .../rasterImageDataTypes.jsonld | 14 ------ .../softwareFeature/scriptingInterface.jsonld | 14 ------ instances/softwareFeature/simulation.jsonld | 14 ------ .../statisticalDataTypes.jsonld | 14 ------ .../softwareFeature/tensorDataTypes.jsonld | 14 ------ .../softwareFeature/tiledDisplayWall.jsonld | 14 ------ .../timeSeriesDataTypes.jsonld | 14 ------ .../vectorImageDataTypes.jsonld | 14 ------ .../softwareFeature/virtualReality.jsonld | 14 ------ instances/species/berghiaStephanieae.jsonld | 16 ------ instances/species/callithrixJacchus.jsonld | 19 ------- .../species/chlorocebusAethiopsSabaeus.jsonld | 22 --------- .../species/chlorocebusPygerythrus.jsonld | 21 -------- instances/species/danioRerio.jsonld | 24 --------- instances/species/felisCatus.jsonld | 20 -------- instances/species/homoSapiens.jsonld | 18 ------- instances/species/macacaFascicularis.jsonld | 22 --------- instances/species/macacaFuscata.jsonld | 17 ------- instances/species/macacaMulatta.jsonld | 17 ------- instances/species/monodelphisDomestica.jsonld | 16 ------ instances/species/musMusculus.jsonld | 17 ------- instances/species/mustelaPutorius.jsonld | 17 ------- instances/species/mustelaPutoriusFuro.jsonld | 19 ------- instances/species/ovisAries.jsonld | 17 ------- instances/species/rattusNorvegicus.jsonld | 18 ------- instances/species/susScrofaDomesticus.jsonld | 19 ------- .../species/trachemysScriptaElegans.jsonld | 21 -------- .../auditoryStimulation.jsonld | 17 ------- .../gustatoryStimulation.jsonld | 17 ------- .../interoceptiveStimulation.jsonld | 17 ------- .../olfactoryStimulation.jsonld | 17 ------- .../tactileStimulation.jsonld | 17 ------- .../visualStimulation.jsonld | 17 ------- .../GestaltVisualStimulation.jsonld | 14 ------ .../abstractImageVisualStimulation.jsonld | 14 ------ .../checkerboardVisualStimulation.jsonld | 19 ------- .../currentStepStimulation.jsonld | 14 ------ .../driftingGratingVisualStimulation.jsonld | 14 ------ .../electricalStimulation.jsonld | 14 ------ .../figure-groundVisualStimulation.jsonld | 14 ------ .../microstimulation.jsonld | 14 ------ .../naturalImageVisualStimulation.jsonld | 14 ------ .../naturalSoundAuditoryStimulation.jsonld | 14 ------ .../optogeneticStimulation.jsonld | 14 ------ .../photonStimulation.jsonld | 14 ------ .../randomDotMotionStimulation.jsonld | 17 ------- .../singlePulseElectricalStimulation.jsonld | 16 ------ .../staticGratingVisualStimulation.jsonld | 14 ------ .../transcranialMagneticStimulation.jsonld | 14 ------ .../whiskerStimulation.jsonld | 14 ------ .../asymmetricSynapse.jsonld | 14 ------ instances/subcellularEntity/axon.jsonld | 16 ------ .../subcellularEntity/axonTerminal.jsonld | 16 ------ instances/subcellularEntity/dendrite.jsonld | 16 ------ .../subcellularEntity/dendriticSpine.jsonld | 14 ------ .../subcellularEntity/mitochondrion.jsonld | 14 ------ instances/subcellularEntity/nerveFiber.jsonld | 17 ------- instances/subcellularEntity/neurite.jsonld | 17 ------- .../subcellularEntity/neurofilament.jsonld | 16 ------ instances/subcellularEntity/nucleus.jsonld | 16 ------ .../subcellularEntity/symmetricSynapse.jsonld | 14 ------ .../subcellularEntity/synapticBouton.jsonld | 16 ------ .../subcellularEntity/synapticProtein.jsonld | 16 ------ .../subcellularEntity/synapticVesicle.jsonld | 14 ------ instances/subjectAttribute/alert.jsonld | 14 ------ instances/subjectAttribute/alive.jsonld | 14 ------ .../subjectAttribute/anaesthetized.jsonld | 14 ------ instances/subjectAttribute/asleep.jsonld | 14 ------ instances/subjectAttribute/awake.jsonld | 14 ------ instances/subjectAttribute/comatose.jsonld | 14 ------ instances/subjectAttribute/control.jsonld | 14 ------ instances/subjectAttribute/deceased.jsonld | 16 ------ instances/subjectAttribute/drugged.jsonld | 17 ------- .../subjectAttribute/freelyMoving.jsonld | 14 ------ .../hasImplantedDevice.jsonld | 14 ------ .../subjectAttribute/hasInsertedDevice.jsonld | 14 ------ .../subjectAttribute/headRestrained.jsonld | 14 ------ instances/subjectAttribute/healthy.jsonld | 14 ------ instances/subjectAttribute/knockin.jsonld | 14 ------ instances/subjectAttribute/knockout.jsonld | 14 ------ .../subjectAttribute/postoperative.jsonld | 14 ------ .../subjectAttribute/preoperative.jsonld | 14 ------ instances/subjectAttribute/restrained.jsonld | 14 ------ instances/subjectAttribute/treated.jsonld | 14 ------ instances/subjectAttribute/untreated.jsonld | 14 ------ .../texturedSurface.jsonld | 14 ------ .../vibratingObject.jsonld | 14 ------ .../vibratingSurface.jsonld | 14 ------ .../3DComputerGraphicModeling.jsonld | 14 ------ .../technique/3DPolarizedLightImaging.jsonld | 14 ------ instances/technique/3DScanning.jsonld | 14 ------ .../4PointsCongruentSetsAlignment.jsonld | 20 -------- instances/technique/CLARITY_TDE.jsonld | 14 ------ instances/technique/DABStaining.jsonld | 16 ------ instances/technique/DAPiStaining.jsonld | 17 ------- .../technique/DNAMethylationAnalysis.jsonld | 16 ------ instances/technique/DNASequencing.jsonld | 19 ------- instances/technique/GolgiStaining.jsonld | 17 ------- instances/technique/GrubbsTest.jsonld | 18 ------- instances/technique/HEStaining.jsonld | 18 ------- instances/technique/HPCSimulation.jsonld | 16 ------ instances/technique/HoechstStaining.jsonld | 16 ------ .../ICABasedDenoisingTechnique.jsonld | 21 -------- instances/technique/MannWhitneyUTest.jsonld | 21 -------- instances/technique/NisslStaining.jsonld | 17 ------- instances/technique/RNASequencing.jsonld | 19 ------- ...gestedFreezeFractureReplicaLabeling.jsonld | 14 ------ .../SWITCHImmunohistochemistry.jsonld | 14 ------ instances/technique/ShapiroWilkTest.jsonld | 16 ------ .../SpearmansRankOrderCorrelation.jsonld | 18 ------- instances/technique/T1PulseSequence.jsonld | 21 -------- instances/technique/T2PulseSequence.jsonld | 21 -------- instances/technique/TDEClearing.jsonld | 14 ------ instances/technique/TimmsStaining.jsonld | 17 ------- instances/technique/WardClustering.jsonld | 14 ------ .../activationLikelihoodEstimation.jsonld | 20 -------- .../activityModulationTechnique.jsonld | 14 ------ .../technique/affineImageRegistration.jsonld | 14 ------ .../technique/affineTransformation.jsonld | 14 ------ .../anaesthesiaAdministration.jsonld | 14 ------ .../technique/anaesthesiaMonitoring.jsonld | 14 ------ .../technique/anaesthesiaTechnique.jsonld | 14 ------ .../anatomicalDelineationTechnique.jsonld | 18 ------- instances/technique/anterogradeTracing.jsonld | 14 ------ instances/technique/autoradiography.jsonld | 14 ------ .../technique/averageLinkageClustering.jsonld | 14 ------ .../avidinBiotinComplexStaining.jsonld | 16 ------ .../beta-galactosidaseStaining.jsonld | 14 ------ .../technique/biasFieldCorrection.jsonld | 16 ------ instances/technique/biocytinStaining.jsonld | 17 ------- instances/technique/bloodSampling.jsonld | 17 ------- instances/technique/bootstrapping.jsonld | 14 ------ .../boundaryBasedRegistration.jsonld | 16 ------ .../technique/brightfieldMicroscopy.jsonld | 14 ------ instances/technique/calciumImaging.jsonld | 14 ------ instances/technique/callosotomy.jsonld | 14 ------ .../technique/cellAttachedPatchClamp.jsonld | 14 ------ instances/technique/clusterAnalysis.jsonld | 14 ------ .../combinedVolumeSurfaceRegistration.jsonld | 16 ------ .../technique/communicationProfiling.jsonld | 14 ------ instances/technique/computerTomography.jsonld | 20 -------- instances/technique/confocalMicroscopy.jsonld | 16 ------ .../technique/conjunctionAnalysis.jsonld | 14 ------ .../connected-componentAnalysis.jsonld | 18 ------- ...nectivityBasedParcellationTechnique.jsonld | 14 ------ .../contrastAgentAdministration.jsonld | 14 ------ .../technique/contrastEnhancement.jsonld | 14 ------ instances/technique/convolution.jsonld | 16 ------ .../technique/correlationAnalysis.jsonld | 14 ------ ...tico-corticalEvokedPotentialMapping.jsonld | 16 ------ instances/technique/covarianceAnalysis.jsonld | 14 ------ instances/technique/craniotomy.jsonld | 14 ------ instances/technique/cryosectioning.jsonld | 17 ------- instances/technique/currentClamp.jsonld | 14 ------ .../currentSourceDensityAnalysis.jsonld | 14 ------ .../technique/cytoarchitectonicMapping.jsonld | 14 ------ instances/technique/deepLearning.jsonld | 14 ------ instances/technique/densityMeasurement.jsonld | 14 ------ instances/technique/dictionaryLearning.jsonld | 16 ------ .../diffeomorphicRegistration.jsonld | 17 ------- .../diffusionFixationTechnique.jsonld | 16 ------ .../technique/diffusionTensorImaging.jsonld | 14 ------ .../technique/diffusionWeightedImaging.jsonld | 14 ------ ...electivePlaneIlluminationMicroscopy.jsonld | 18 ------- .../technique/echoPlanarPulseSequence.jsonld | 16 ------ .../technique/electrocardiography.jsonld | 16 ------ .../technique/electrocorticography.jsonld | 16 ------ .../technique/electroencephalography.jsonld | 14 ------ instances/technique/electromyography.jsonld | 14 ------ instances/technique/electronMicroscopy.jsonld | 16 ------ instances/technique/electronTomography.jsonld | 16 ------ instances/technique/electrooculography.jsonld | 14 ------ instances/technique/electroporation.jsonld | 16 ------ instances/technique/ensembleLearning.jsonld | 14 ------ .../enzymeLinkedImmunosorbentAssay.jsonld | 16 ------ ...epidermalElectrophysiologyTechnique.jsonld | 16 ------ .../epiduralElectrocorticography.jsonld | 14 ------ .../technique/epifluorescentMicroscopy.jsonld | 19 ------- .../extracellularElectrophysiology.jsonld | 14 ------ .../technique/eyeMovementTracking.jsonld | 17 ------- instances/technique/fixationTechnique.jsonld | 14 ------ .../technique/fluorescenceMicroscopy.jsonld | 14 ------ ...edIonBeamScanningElectronMicroscopy.jsonld | 19 ------- .../functionalMagneticResonanceImaging.jsonld | 14 ------ .../geneExpressionMeasurement.jsonld | 14 ------ instances/technique/geneKnockin.jsonld | 14 ------ instances/technique/geneKnockout.jsonld | 14 ------ .../technique/generalLinearModeling.jsonld | 14 ------ .../geneticCorrelationAnalysis.jsonld | 14 ------ instances/technique/geneticRiskScore.jsonld | 16 ------ .../genomeWideAssociationStudy.jsonld | 23 --------- .../technique/globalSignalRegression.jsonld | 16 ------ .../gradientEchoPulseSequence.jsonld | 16 ------ .../heavyMetalNegativeStaining.jsonld | 18 ------- ...hierarchicalAgglomerativeClustering.jsonld | 14 ------ .../technique/hierarchicalClustering.jsonld | 14 ------ .../hierarchicalDivisiveClustering.jsonld | 14 ------ ...hierarchicalPhaseContrastTomography.jsonld | 17 ------- .../technique/high-resolutionScanning.jsonld | 14 ------ .../technique/high-speedVideoRecording.jsonld | 14 ------ .../highDensityElectroencephalography.jsonld | 14 ------ ...dFunctionalMagneticResonanceImaging.jsonld | 14 ------ .../highFieldMagneticResonanceImaging.jsonld | 14 ------ .../technique/highThroughputScanning.jsonld | 16 ------ instances/technique/histochemistry.jsonld | 14 ------ .../imageDistortionCorrection.jsonld | 14 ------ instances/technique/imageRegistration.jsonld | 16 ------ .../technique/immunohistochemistry.jsonld | 16 ------ .../technique/immunoprecipitation.jsonld | 14 ------ instances/technique/implantSurgery.jsonld | 14 ------ .../technique/inSituHybridisation.jsonld | 14 ------ .../independentComponentAnalysis.jsonld | 14 ------ ...InterferenceContrastVideoMicroscopy.jsonld | 17 ------- instances/technique/injection.jsonld | 14 ------ .../technique/interSubjectAnalysis.jsonld | 14 ------ instances/technique/interpolation.jsonld | 14 ------ .../technique/intraSubjectAnalysis.jsonld | 14 ------ .../intracellularElectrophysiology.jsonld | 16 ------ .../technique/intracellularInjection.jsonld | 14 ------ .../intracranialElectroencephalography.jsonld | 14 ------ .../technique/intraperitonealInjection.jsonld | 19 ------- .../technique/intravenousInjection.jsonld | 19 ------- instances/technique/iontophoresis.jsonld | 14 ------ .../iontophoreticMicroinjection.jsonld | 14 ------ instances/technique/k-meansClustering.jsonld | 17 ------- instances/technique/lightMicroscopy.jsonld | 17 ------- .../lightSheetFluorescenceMicroscopy.jsonld | 19 ------- .../technique/linearImageRegistration.jsonld | 14 ------ instances/technique/linearRegression.jsonld | 14 ------ .../technique/linearTransformation.jsonld | 14 ------ instances/technique/literatureMining.jsonld | 14 ------ .../technique/magneticResonanceImaging.jsonld | 14 ------ .../magneticResonanceSpectroscopy.jsonld | 14 ------ .../technique/magnetoencephalography.jsonld | 16 ------ instances/technique/manifoldLearning.jsonld | 14 ------ instances/technique/massSpectrometry.jsonld | 14 ------ .../technique/massUnivariateAnalysis.jsonld | 14 ------ .../maximumLikelihoodEstimation.jsonld | 17 ------- .../maximumProbabilityProjection.jsonld | 14 ------ instances/technique/metaAnalysis.jsonld | 14 ------ .../metaAnalyticConnectivityModeling.jsonld | 14 ------ instances/technique/metadataParsing.jsonld | 14 ------ .../technique/microtomeSectioning.jsonld | 16 ------ ...lBasedstimulationArtifactCorrection.jsonld | 16 ------ .../technique/morphometricAnalysis.jsonld | 14 ------ instances/technique/morphometry.jsonld | 14 ------ instances/technique/motionCorrection.jsonld | 14 ------ instances/technique/movementTracking.jsonld | 16 ------ .../multi-compartmentModeling.jsonld | 14 ------ ...-scaleIndividualComponentClustering.jsonld | 17 ------- ...trodeExtracellularElectrophysiology.jsonld | 14 ------ .../multiVoxelPatternAnalysis.jsonld | 16 ------ .../technique/multipleLinearRegression.jsonld | 19 ------- .../multipleWholeCellPatchClamp.jsonld | 14 ------ instances/technique/myelinStaining.jsonld | 14 ------ .../technique/neuromorphicSimulation.jsonld | 14 ------ .../nonlinearImageRegistration.jsonld | 16 ------ .../technique/nonlinearTransformation.jsonld | 16 ------ .../nonrigidImageRegistration.jsonld | 16 ------ .../technique/nonrigidMotionCorrection.jsonld | 16 ------ .../technique/nonrigidTransformation.jsonld | 16 ------ .../technique/nucleicAcidExtraction.jsonld | 14 ------ instances/technique/nuisanceRegression.jsonld | 16 ------ .../technique/optogeneticInhibition.jsonld | 14 ------ instances/technique/oralAdministration.jsonld | 18 ------- instances/technique/organExtraction.jsonld | 14 ------ instances/technique/patchClamp.jsonld | 14 ------ instances/technique/pathwayAnalysis.jsonld | 24 --------- .../technique/performanceProfiling.jsonld | 14 ------ .../perfusionFixationTechnique.jsonld | 14 ------ instances/technique/perfusionTechnique.jsonld | 14 ------ ...rbationalComplexityIndexMeasurement.jsonld | 14 ------ ...phaseContrastXRayComputedTomography.jsonld | 20 -------- .../technique/phaseContrastXRayImaging.jsonld | 16 ------ .../phaseSynchronizationAnalysis.jsonld | 17 ------- instances/technique/photoactivation.jsonld | 14 ------ instances/technique/photoinactivation.jsonld | 14 ------ .../technique/photoplethysmography.jsonld | 16 ------ .../technique/polarizedLightMicroscopy.jsonld | 14 ------ .../populationReceptiveFieldMapping.jsonld | 14 ------ .../positronEmissionTomography.jsonld | 14 ------ instances/technique/pressureInjection.jsonld | 14 ------ .../technique/primaryAntibodyStaining.jsonld | 14 ------ .../principalComponentAnalysis.jsonld | 16 ------ ...sticAnatomicalParcellationTechnique.jsonld | 14 ------ .../probabilisticDiffusionTractography.jsonld | 14 ------ ...seudoContinuousArterialSpinLabeling.jsonld | 14 ------ .../technique/psychologicalTesting.jsonld | 14 ------ instances/technique/pupillometry.jsonld | 14 ------ .../technique/qualitativeAnalysis.jsonld | 14 ------ instances/technique/quantification.jsonld | 14 ------ .../technique/quantitativeAnalysis.jsonld | 14 ------ ...uantitativeMagneticResonanceImaging.jsonld | 14 ------ .../technique/receptiveFieldMapping.jsonld | 16 ------ .../technique/reconstructionTechnique.jsonld | 14 ------ ...orterGeneBasedExpressionMeasurement.jsonld | 14 ------ ...erProteinBasedExpressionMeasurement.jsonld | 14 ------ instances/technique/retinotopicMapping.jsonld | 16 ------ instances/technique/retrogradeTracing.jsonld | 14 ------ .../technique/rigidImageRegistration.jsonld | 14 ------ .../technique/rigidMotionCorrection.jsonld | 14 ------ .../technique/rigidTransformation.jsonld | 14 ------ instances/technique/rule-basedModeling.jsonld | 14 ------ .../scanningElectronMicroscopy.jsonld | 17 ------- .../technique/scatteredLightImaging.jsonld | 14 ------ .../secondaryAntibodyStaining.jsonld | 14 ------ .../seed-basedCorrelationAnalysis.jsonld | 14 ------ instances/technique/semanticAnchoring.jsonld | 14 ------ .../technique/semiquantitativeAnalysis.jsonld | 14 ------ ...BlockFaceScanningElectronMicroscopy.jsonld | 18 ------- ...ctionTransmissionElectronMicroscopy.jsonld | 14 ------ ...arpElectrodeIntracellularElectrophysiology | 19 ------- .../technique/signalFilteringTechnique.jsonld | 17 ------- .../signalProcessingTechnique.jsonld | 16 ------ instances/technique/silverStaining.jsonld | 16 ------ instances/technique/simulation.jsonld | 14 ------ .../technique/singleCellRNASequencing.jsonld | 14 ------ ...trodeExtracellularElectrophysiology.jsonld | 14 ------ ...trodeJuxtacellularElectrophysiology.jsonld | 14 ------ instances/technique/singleGeneAnalysis.jsonld | 17 ------- ...ngleNucleotidePolymorphismDetection.jsonld | 18 ------- .../technique/sliceTimingCorrection.jsonld | 16 ------ instances/technique/sodiumMRI.jsonld | 18 ------- instances/technique/sonography.jsonld | 14 ------ ...ctralPowerAutoSegmentationTechnique.jsonld | 16 ------ instances/technique/spikeSorting.jsonld | 16 ------ .../technique/spinEchoPulseSequence.jsonld | 16 ------ .../stereoelectroencephalography.jsonld | 21 -------- instances/technique/stereology.jsonld | 14 ------ .../technique/stereotacticSurgery.jsonld | 14 ------ ...stochasticOnlineMatrixFactorization.jsonld | 16 ------ .../structuralCovarianceAnalysis.jsonld | 14 ------ .../technique/structuralNeuroimaging.jsonld | 14 ------ .../technique/subcutaneousInjection.jsonld | 19 ------- .../subduralElectrocorticography.jsonld | 14 ------ .../technique/subliminalStimulation.jsonld | 14 ------ .../subliminalVisualStimulation.jsonld | 14 ------ .../supportVectorMachineClassifier.jsonld | 21 -------- .../supportVectorMachineRegression.jsonld | 20 -------- instances/technique/surfaceProjection.jsonld | 16 ------ instances/technique/temporalFiltering.jsonld | 18 ------- ...trodeExtracellularElectrophysiology.jsonld | 14 ------ ...-flightMagneticResonanceAngiography.jsonld | 23 --------- instances/technique/tissueClearing.jsonld | 14 ------ instances/technique/tractTracing.jsonld | 14 ------ instances/technique/tractography.jsonld | 14 ------ ...nscardialPerfusionFixationTechnique.jsonld | 17 ------- .../transcardialPerfusionTechnique.jsonld | 17 ------- instances/technique/transformation.jsonld | 14 ------ .../transmissionElectronMicroscopy.jsonld | 16 ------ .../twoPhotonFluorescenceMicroscopy.jsonld | 24 --------- ...dFunctionalMagneticResonanceImaging.jsonld | 14 ------ ...raHighFieldMagneticResonanceImaging.jsonld | 14 ------ ...hFieldMagneticResonanceSpectroscopy.jsonld | 14 ------ .../technique/vibratomeSectioning.jsonld | 14 ------ instances/technique/video-oculography.jsonld | 14 ------ instances/technique/videoAnnotation.jsonld | 14 ------ instances/technique/videoTracking.jsonld | 14 ------ .../virus-mediatedTransfection.jsonld | 14 ------ instances/technique/voltageClamp.jsonld | 14 ------ .../voltageSensitiveDyeImaging.jsonld | 14 ------ .../technique/voxel-basedMorphometry.jsonld | 14 ------ .../weightedCorrelationNetworkAnalysis.jsonld | 17 ------- .../technique/wholeCellPatchClamp.jsonld | 14 ------ .../technique/wholeGenomeSequencing.jsonld | 19 ------- .../widefieldFluorescenceMicroscopy.jsonld | 14 ------ instances/technique/zScoreAnalysis.jsonld | 16 ------ .../terminology/UBERONParcellation.jsonld | 14 ------ instances/terminology/actionStatusType.jsonld | 14 ------ instances/terminology/ageCategory.jsonld | 14 ------ .../terminology/analysisTechnique.jsonld | 14 ------ .../anatomicalAxesOrientation.jsonld | 14 ------ .../anatomicalIdentificationType.jsonld | 14 ------ instances/terminology/anatomicalPlane.jsonld | 16 ------ .../terminology/annotationCriteriaType.jsonld | 14 ------ instances/terminology/annotationType.jsonld | 14 ------ instances/terminology/atlasType.jsonld | 14 ------ .../terminology/auditoryStimulusType.jsonld | 14 ------ instances/terminology/biologicalOrder.jsonld | 14 ------ .../terminology/biologicalProcess.jsonld | 14 ------ instances/terminology/biologicalSex.jsonld | 14 ------ instances/terminology/breedingType.jsonld | 14 ------ instances/terminology/cellCultureType.jsonld | 14 ------ instances/terminology/cellType.jsonld | 14 ------ .../terminology/chemicalMixtureType.jsonld | 14 ------ instances/terminology/colormap.jsonld | 14 ------ instances/terminology/contributionType.jsonld | 14 ------ .../cranialWindowConstructionType.jsonld | 14 ------ 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a/instances/UBERONParcellation/CA1Alveus.jsonld b/instances/UBERONParcellation/CA1Alveus.jsonld deleted file mode 100644 index 097ae5120..000000000 --- a/instances/UBERONParcellation/CA1Alveus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA1Alveus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA1 alveus' is a layer of CA1 field. It is part of the hippocampus alveus.", - "description": "Part of alveus lying in area CA1, deep to the stratum oriens of CA1 and continuous with the alveus of CA2", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101521", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014570#ca1-alveus-1", - "name": "CA1 alveus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014570", - "synonym": [ - "alveus of the CA1 field" - ] -} diff --git a/instances/UBERONParcellation/CA1FieldOfHippocampus.jsonld b/instances/UBERONParcellation/CA1FieldOfHippocampus.jsonld deleted file mode 100644 index 87361009f..000000000 --- a/instances/UBERONParcellation/CA1FieldOfHippocampus.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA1FieldOfHippocampus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA1 field of hippocampus' is a hippocampal field.", - "description": "Part of hippocampus proper bounded by CA2 and the subiculum, characterized by pyramidal neurons that receive projections from pyramidal neurons of CA3 via the Schaffer collaterals.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101520", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003881#ca1", - "name": "CA1 field of hippocampus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003881", - "synonym": [ - "Ammon's horn (Lorente de Ns)", - "CA1", - "CA1 field", - "CA1 field of Ammon's horn", - "CA1 field of cornu ammonis", - "CA1 field of hippocampus", - "CA1 field of the Ammon horn", - "CA1 field of the hippocampus", - "cornu ammonis 1", - "field CA1", - "field CA1 of hippocampus", - "hippocampus CA1", - "prosubiculum = distal ca1", - "regio i cornus ammonis", - "regio i hippocampi proprii", - "regio superior", - "regio superior of the hippocampus", - "region 1 of Ammon's horn", - "region CA1", - "region i of ammon's horn", - "region i of hippocampus proper" - ] -} diff --git a/instances/UBERONParcellation/CA1StratumLacunosumMoleculare.jsonld b/instances/UBERONParcellation/CA1StratumLacunosumMoleculare.jsonld deleted file mode 100644 index fd155f0d8..000000000 --- a/instances/UBERONParcellation/CA1StratumLacunosumMoleculare.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA1StratumLacunosumMoleculare", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA1 stratum lacunosum moleculare' is a layer of CA1 field. It is part of the hippocampus stratum lacunosum moleculare.", - "description": "Part of stratum lacunosum-moleculare lying in area CA1, superficial to CA1 stratum radiatum and bounded by the pial surface, continuous with stratum lacunosum-moleculare of CA2 and the subiculum stratum moleculare.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101523", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014557#ca1-stratum-lacunosum-moleculare-1", - "name": "CA1 stratum lacunosum moleculare", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014557", - "synonym": [ - "CA1 part of stratum lacunosum moleculare", - "CA1 s. lacunosum moleculare", - "lacunar-molecular layer of CA1 field", - "stratum lacunosum moleculare of the CA1 field" - ] -} diff --git a/instances/UBERONParcellation/CA1StratumOriens.jsonld b/instances/UBERONParcellation/CA1StratumOriens.jsonld deleted file mode 100644 index cbc9e5f60..000000000 --- a/instances/UBERONParcellation/CA1StratumOriens.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA1StratumOriens", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA1 stratum oriens' is a layer of CA1 field. It is part of the hippocampus stratum oriens.", - "description": "Part of stratum oriens lying in area CA1, superficial to the alveus of CA1 and deep to the pyramidal cell layer of CA1. It is continuous with the stratum oriens of CA2 and bounded by the subiculum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101524", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014552#ca1-stratum-oriens-1", - "name": "CA1 stratum oriens", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014552", - "synonym": [ - "CA1 part of stratum oriens", - "CA1 s. oriens", - "CA1 stratum oriens", - "oriens layer of CA1 field", - "stratum oriens of the CA1 field" - ] -} diff --git a/instances/UBERONParcellation/CA1StratumRadiatum.jsonld b/instances/UBERONParcellation/CA1StratumRadiatum.jsonld deleted file mode 100644 index 2c99ed486..000000000 --- a/instances/UBERONParcellation/CA1StratumRadiatum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA1StratumRadiatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA1 stratum radiatum' is a layer of CA1 field. It is part of the hippocampus stratum radiatum.", - "description": "Part of stratum radiatum lying in area CA1, superficial to the CA1 pyramidal cell layer and deep to the CA1 stratum lucidum-moleculare, continuous with the stratum radiatum of CA2 and bounded by the subiculum. It contains the Schaffer collateral projection from CA3.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101526", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014554#ca1-stratum-radiatum-1", - "name": "CA1 stratum radiatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014554", - "synonym": [ - "CA1 part of stratum radiatum", - "CA1 s. radiatum", - "radiatum layer of CA1 field", - "stratum radiatum of the CA1 field" - ] -} diff --git a/instances/UBERONParcellation/CA2FieldOfHippocampus.jsonld b/instances/UBERONParcellation/CA2FieldOfHippocampus.jsonld deleted file mode 100644 index 73b629c01..000000000 --- a/instances/UBERONParcellation/CA2FieldOfHippocampus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA2FieldOfHippocampus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460).", - "description": "'CA2 field of hippocampus' is a hippocampal field.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101527", - "knowledgeSpaceLink": null, - "name": "CA2 field of hippocampus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003882", - "synonym": null -} diff --git a/instances/UBERONParcellation/CA2StratumRadiatum.jsonld b/instances/UBERONParcellation/CA2StratumRadiatum.jsonld deleted file mode 100644 index a9fd8b854..000000000 --- a/instances/UBERONParcellation/CA2StratumRadiatum.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA2StratumRadiatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA2 stratum radiatum' is a layer of CA2 field. It is part of the hippocampus stratum radiatum.", - "description": "Part of stratum radiatum in area CA2, lying superficial to the pyramidal cell layer and deep to CA2 stratum lacunosum-moleculare, continuous with the stratum radiatum of CA1 and CA3.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101533", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014555#ca2-stratum-radiatum-1", - "name": "CA2 stratum radiatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014555", - "synonym": [ - "CA2 part of stratum radiatum", - "CA2 stratum radiatum", - "radiate layer of CA2 field", - "stratum radiatum of CA2", - "stratum radiatum of the CA2 field" - ] -} diff --git a/instances/UBERONParcellation/CA3Alveus.jsonld b/instances/UBERONParcellation/CA3Alveus.jsonld deleted file mode 100644 index f5faf4b3a..000000000 --- a/instances/UBERONParcellation/CA3Alveus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA3Alveus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA3 alveus' is a layer of CA3 field. It is part of the hippocampus alveus.", - "description": "Part of alveus lying within hippocampal sector CA3", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101535", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014571#ca3-alveus-1", - "name": "CA3 alveus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014571", - "synonym": [ - "alveus of the CA3 field" - ] -} diff --git a/instances/UBERONParcellation/CA3FieldOfHippocampus.jsonld b/instances/UBERONParcellation/CA3FieldOfHippocampus.jsonld deleted file mode 100644 index cf7011849..000000000 --- a/instances/UBERONParcellation/CA3FieldOfHippocampus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA3FieldOfHippocampus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Part of hippocampus proper bounded by the hilus of the dentate gyrus and area CA2, characterized by large pyramidal cells and a dense projection from dentate gyrus granule cell mossy fibers.", - "description": "'CA3 field of hippocampus' is a hippocampal field.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101534", - "knowledgeSpaceLink": null, - "name": "CA3 field of hippocampus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003883", - "synonym": null -} diff --git a/instances/UBERONParcellation/CA3StratumRadiatum.jsonld b/instances/UBERONParcellation/CA3StratumRadiatum.jsonld deleted file mode 100644 index 4884b8cc4..000000000 --- a/instances/UBERONParcellation/CA3StratumRadiatum.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/CA3StratumRadiatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'CA3 stratum radiatum' is a layer of CA3 field. It is part of the hippocampus stratum radiatum.", - "description": "Part of stratum radiatum in area CA3, lying superficial to the stratum lucidum and deep to CA3 stratum lacunosum-moleculare.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101542", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014556#ca3-stratum-radiatum-1", - "name": "CA3 stratum radiatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014556", - "synonym": [ - "CA3 part of stratum radiatum", - "CA3 s. radiatum", - "CA3 stratum radiatum", - "radiate layer of CA3 field", - "stratum radiatum of the CA3 field" - ] -} diff --git a/instances/UBERONParcellation/abducensNucleus.jsonld b/instances/UBERONParcellation/abducensNucleus.jsonld deleted file mode 100644 index 45b6b9f15..000000000 --- a/instances/UBERONParcellation/abducensNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/abducensNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Abducens nucleus' is a cranial nerve nucleus, brainstem nucleus and hindbrain nucleus. It is part of the pons.", - "description": "Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100175", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002682#abducens-nucleus-1", - "name": "abducens nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002682", - "synonym": null -} diff --git a/instances/UBERONParcellation/accessoryAbducensNucleus.jsonld b/instances/UBERONParcellation/accessoryAbducensNucleus.jsonld deleted file mode 100644 index 3fd2f39ef..000000000 --- a/instances/UBERONParcellation/accessoryAbducensNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryAbducensNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory abducens nucleus' is a nucleus of pontine reticular formation.", - "description": "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating theretractor bulbi muscles of the eye", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100207", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035976#accessory-abducens-nucleus", - "name": "accessory abducens nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035976", - "synonym": [ - "ACVI" - ] -} diff --git a/instances/UBERONParcellation/accessoryBasalAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/accessoryBasalAmygdaloidNucleus.jsonld deleted file mode 100644 index f3f213320..000000000 --- a/instances/UBERONParcellation/accessoryBasalAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryBasalAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory basal amygdaloid nucleus' is a telencephalic nucleus. It is part of the basolateral amygdaloid nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100209", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002885#accessory-basal-amygdaloid-nucleus-1", - "name": "accessory basal amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002885", - "synonym": [ - "ABA", - "accessory basal nucleus", - "accessory basal nucleus of amygdala", - "accessory basal nucleus of the amygdala", - "basal amygdaloid nucleus", - "basomedial nucleus (accessory basal nucleus)", - "basomedial nucleus (De Olmos)", - "basomedial nucleus (de olmos)", - "basomedial nucleus of amygdala", - "basomedial nucleus of the amygdala", - "medial part", - "medial principal nucleus", - "nucleus amygdalae basalis accessorius", - "nucleus amygdaloideus basalis", - "nucleus amygdaloideus basomedialis", - "nucleus basalis accessorius amygdalae", - "pars medialis" - ] -} diff --git a/instances/UBERONParcellation/accessoryCuneateNucleus.jsonld b/instances/UBERONParcellation/accessoryCuneateNucleus.jsonld deleted file mode 100644 index 15da43235..000000000 --- a/instances/UBERONParcellation/accessoryCuneateNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryCuneateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory cuneate nucleus' is a nucleus of medulla oblongata.", - "description": "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100211", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002864#accessory-cuneate-nucleus-1", - "name": "accessory cuneate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002864", - "synonym": [ - "ACu", - "external cuneate nucleus", - "external cuneate nucleus (Monakow, Blumenau 1891)", - "lateral cuneate nucleus", - "nucleus cuneatis externus", - "nucleus cuneatus accessorius", - "nucleus cuneatus lateralis", - "nucleus funiculi cuneatus externus", - "nucleus Monakow", - "nucleus of corpus restiforme" - ] -} diff --git a/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld b/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld deleted file mode 100644 index dca2bac56..000000000 --- a/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryMedullaryLaminaOfGlobusPallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the medial globus pallidus.", - "description": "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100214", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002763#accessory-medullary-lamina", - "name": "accessory medullary lamina of globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002763", - "synonym": [ - "accessory medullar lamina of pallidum", - "accessory medullary lamina", - "accessory medullary lamina of corpus striatum", - "accessory medullary lamina of globus pallidus", - "accessory medullary lamina of pallidum", - "accessory medullary lamina pallidus", - "incomplete medullary lamina of globus pallidus", - "incomplete medullary lamina of the globus pallidus", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris accessoria corporis striati", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta" - ] -} diff --git a/instances/UBERONParcellation/accessoryNerveFiberBundle.jsonld b/instances/UBERONParcellation/accessoryNerveFiberBundle.jsonld deleted file mode 100644 index a83a28a6e..000000000 --- a/instances/UBERONParcellation/accessoryNerveFiberBundle.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryNerveFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Accessory nerve fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the medulla oblongata.", - "description": "Fibers of the accessory nerve (11th cranial nerve) contained within the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100215", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006117#accessory-nerve-fiber-bundle-1", - "name": "accessory nerve fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006117", - "synonym": [ - "accessory nerve fiber bundle", - "accessory nerve fibers", - "accessory nerve tract", - "eleventh cranial nerve fibers", - "fibrae nervi accessorius" - ] -} diff --git a/instances/UBERONParcellation/accessoryNerveRoot.jsonld b/instances/UBERONParcellation/accessoryNerveRoot.jsonld deleted file mode 100644 index 8d443752b..000000000 --- a/instances/UBERONParcellation/accessoryNerveRoot.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/accessoryNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A nerve root that is part of a accessory XI nerve.", - "description": "'Accessory nerve root' is a nerve root.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0723817", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014615#accessory-nerve-root-1", - "name": "accessory nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014615", - "synonym": null -} diff --git a/instances/UBERONParcellation/adenohypophysis.jsonld b/instances/UBERONParcellation/adenohypophysis.jsonld deleted file mode 100644 index dee839759..000000000 --- a/instances/UBERONParcellation/adenohypophysis.jsonld +++ /dev/null @@ -1,33 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/adenohypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Adenohypophysis' is part of the pituitary gland.", - "description": "The adenohypophysis, which consists of the anterior and intermediate lobes of the pituitary gland, contains several types of endocrine cells, which secrete systemic hormones such as adenocorticotropic hormone (ACTH), GH, LH/FSH, TSH and prolactin in response to hypothalamus-derived releasing hormones (PMID: 22080957).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100315", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002196#adenohypophysis-1", - "name": "adenohypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002196", - "synonym": [ - "AHP", - "anterior hypophysis", - "anterior lobe", - "anterior lobe (hypophysis)", - "anterior lobe of hypophysis", - "anterior lobe of pituitary", - "anterior lobe of pituitary gland", - "anterior lobe of the pituitary", - "anterior pituitary", - "anterior pituitary gland", - "cranial lobe", - "lobus anterior", - "lobus anterior (glandula pituitaria)", - "lobus anterior hypophysis", - "pituitary anterior lobe", - "pituitary gland", - "pituitary glandanterior lobe", - "rostral lobe" - ] -} diff --git a/instances/UBERONParcellation/aggregateRegionalPartOfBrain.jsonld b/instances/UBERONParcellation/aggregateRegionalPartOfBrain.jsonld deleted file mode 100644 index 402bd464e..000000000 --- a/instances/UBERONParcellation/aggregateRegionalPartOfBrain.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/aggregateRegionalPartOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Aggregate regional part of brain' is an anatomical entity. It is part of the brain.", - "description": "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100410", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010009#aggregate-regional-part-of-brain-1", - "name": "aggregate regional part of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010009", - "synonym": [ - "set of nuclei of neuraxis" - ] -} diff --git a/instances/UBERONParcellation/alarCentralLobule.jsonld b/instances/UBERONParcellation/alarCentralLobule.jsonld deleted file mode 100644 index 411c5970a..000000000 --- a/instances/UBERONParcellation/alarCentralLobule.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/alarCentralLobule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted].", - "description": "'Alar central lobule' is a cerebellum hemisphere lobule.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100438", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003013#alar-central-lobule-1", - "name": "alar central lobule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003013", - "synonym": null -} diff --git a/instances/UBERONParcellation/allocortex.jsonld b/instances/UBERONParcellation/allocortex.jsonld deleted file mode 100644 index 3e41764bb..000000000 --- a/instances/UBERONParcellation/allocortex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/allocortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Allocortex' is a regional part of brain. It is part of the cerebral cortex.", - "description": "One of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 ).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100473", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014734#allocortex", - "name": "allocortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014734", - "synonym": [ - "allocortex (Stephan)", - "heterogenetic cortex", - "heterogenetic formations", - "intercalated nucleus of the medulla", - "nucleus intercalatus (staderini)", - "transitional cortex" - ] -} diff --git a/instances/UBERONParcellation/amiculumOfDentateNucleus.jsonld b/instances/UBERONParcellation/amiculumOfDentateNucleus.jsonld deleted file mode 100644 index 903e89242..000000000 --- a/instances/UBERONParcellation/amiculumOfDentateNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/amiculumOfDentateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Amiculum of dentate nucleus' is a white matter of metencephalon and amiculum. It is part of the dentate nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100532", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002568#amiculum-of-dentate-nucleus-1", - "name": "amiculum of dentate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002568", - "synonym": [ - "amdt", - "amiculum nuclei dentati", - "amiculum of the dentate nucleus", - "dentate nuclear amiculum" - ] -} diff --git a/instances/UBERONParcellation/ammonsHorn.jsonld b/instances/UBERONParcellation/ammonsHorn.jsonld deleted file mode 100644 index 6bdf0295b..000000000 --- a/instances/UBERONParcellation/ammonsHorn.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ammonsHorn", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ammon's horn' is a regional part of brain. It is part of the limbic system, hippocampal formation and limbic lobe.", - "description": "A part of the hippocampal formation consisting of a three layered cortex located in the forebrain bordered by the medial surface of the lateral ventricle, the dentate gyrus and the subiculum. It has 3 subfields termed CA1, CA2 and CA3. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105021", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001954#hippocampus", - "name": "Ammon's horn", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001954", - "synonym": [ - "ammon gyrus", - "ammon horn", - "Ammon horn fields", - "Ammon's horn", - "Ammons horn", - "cornu ammonis", - "Hip", - "hippocampus", - "hippocampus major", - "hippocampus proper", - "hippocampus proprius" - ] -} diff --git a/instances/UBERONParcellation/amygdala.jsonld b/instances/UBERONParcellation/amygdala.jsonld deleted file mode 100644 index 09e9367b3..000000000 --- a/instances/UBERONParcellation/amygdala.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/amygdala", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Amygdala' is a basal ganglion and cerebral hemisphere gray matter. It is part of the limbic system and temporal lobe.", - "description": "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100573", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001876#amygdala-1", - "name": "amygdala", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001876", - "synonym": [ - "amygdaloid area", - "amygdaloid body", - "amygdaloid complex", - "amygdaloid nuclear complex", - "amygdaloid nuclear group", - "amygdaloid nuclear groups", - "amygdaloid nucleus", - "archistriatum", - "Archistriatum", - "corpus amygdalae", - "corpus amygdaloideum", - "nucleus amygdalae" - ] -} diff --git a/instances/UBERONParcellation/angularGyrus.jsonld b/instances/UBERONParcellation/angularGyrus.jsonld deleted file mode 100644 index 0ff49282f..000000000 --- a/instances/UBERONParcellation/angularGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/angularGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Angular gyrus' is a gyrus. It is part of the parietal lobe.", - "description": "Part of inferior parietal lobule formed by the cortex surrounding the upturned end of the superior temporal sulcus (Nolte, The Human Brain, 6th ed, 2009, pg 659)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100627", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002686#angular-gyrus-1", - "name": "angular gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002686", - "synonym": [ - "AG", - "gyrus angularis", - "gyrus parietalis inferior", - "middle part of inferior parietal lobule", - "prelunate gyrus", - "preoccipital gyrus" - ] -} diff --git a/instances/UBERONParcellation/annectantGyrus.jsonld b/instances/UBERONParcellation/annectantGyrus.jsonld deleted file mode 100644 index a97996b1e..000000000 --- a/instances/UBERONParcellation/annectantGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/annectantGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Annectant gyrus' is an occipital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100647", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0026137#annectant-gyrus-1", - "name": "annectant gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0026137", - "synonym": [ - "annectant gyrus" - ] -} diff --git a/instances/UBERONParcellation/ansaLenticularis.jsonld b/instances/UBERONParcellation/ansaLenticularis.jsonld deleted file mode 100644 index e07acb4be..000000000 --- a/instances/UBERONParcellation/ansaLenticularis.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansaLenticularis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ansa lenticularis' is a diencephalic white matter. It is part of the ventral thalamus.", - "description": "White matter bundle containing part of the projection of the globus pallidus to the thalamus, forming a compact, conspicuous bundle running beneath the internal capsule and hooking around its medial edge (Nolte, The Human Brain, 6th ed., 2009, pg 659)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100654", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009641#ansa-lenticularis-1", - "name": "ansa lenticularis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009641", - "synonym": [ - "al", - "ansa lenticularis in thalamo", - "ansa lenticularis in thalamus", - "ventral peduncle of lateral forebrain bundle" - ] -} diff --git a/instances/UBERONParcellation/ansiformLobuleCrusI.jsonld b/instances/UBERONParcellation/ansiformLobuleCrusI.jsonld deleted file mode 100644 index af4e86d32..000000000 --- a/instances/UBERONParcellation/ansiformLobuleCrusI.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansiformLobuleCrusI", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104941", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005976#hemispheric-lobule-viia", - "name": "ansiform lobule crus I", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005976", - "synonym": [ - "crus I of the ansiform lobule (HVII)", - "crus primum lobuli ansiformis cerebelli [h vii a]", - "first crus of ansiform lobule of cerebellum [hVIIa]", - "hemispheric lobule VIIA", - "lobulus ansiform crus I", - "lobulus semilunaris superior", - "lobulus semilunaris superior cerebelli", - "posterior superior lobule", - "semilunar lobule-1 (superior)", - "superior semilunar lobule", - "superior semilunar lobule of cerebellum" - ] -} diff --git a/instances/UBERONParcellation/ansiformLobuleCrusII.jsonld b/instances/UBERONParcellation/ansiformLobuleCrusII.jsonld deleted file mode 100644 index 6dbb51444..000000000 --- a/instances/UBERONParcellation/ansiformLobuleCrusII.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ansiformLobuleCrusII", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104942", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NLXANAT:20081209#ansiform-lobule-crus-ii", - "name": "ansiform lobule crus II", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005977", - "synonym": [ - "crus II of the ansiform lobule (HVII)", - "crus secundum lobuli ansiformis cerebelli [hVII A]", - "hemispheric lobule VIIBi", - "inferior semilunar lobule", - "inferior semilunar lobule of cerebellum", - "lobulus ansiform crus II", - "lobulus semilunaris inferior", - "lobulus semilunaris inferior cerebelli", - "posterior inferior lobule", - "second crus of ansiform lobule of cerebellum [hVIIa]", - "semilunar lobule-2 (inferior)" - ] -} diff --git a/instances/UBERONParcellation/anteriorAmygdaloidArea.jsonld b/instances/UBERONParcellation/anteriorAmygdaloidArea.jsonld deleted file mode 100644 index e513186aa..000000000 --- a/instances/UBERONParcellation/anteriorAmygdaloidArea.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorAmygdaloidArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior amygdaloid area' is a cerebral hemisphere gray matter. It is part of the corticomedial nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100670", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002890#anterior-amygdaloid-area-1", - "name": "anterior amygdaloid area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002890", - "synonym": [ - "AA", - "anterior amygaloid area", - "anterior amygdalar area", - "anterior cortical nucleus", - "area amydaliformis anterior", - "area amygdaloidea anterior", - "area anterior amygdalae" - ] -} diff --git a/instances/UBERONParcellation/anteriorCalcarineSulcus.jsonld b/instances/UBERONParcellation/anteriorCalcarineSulcus.jsonld deleted file mode 100644 index 5dd83309f..000000000 --- a/instances/UBERONParcellation/anteriorCalcarineSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCalcarineSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Anterior calcarine sulcus' is a sulcus of brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100672", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002582#anterior-calcarine-sulcus-1", - "name": "anterior calcarine sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002582", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorCingulateCortex.jsonld b/instances/UBERONParcellation/anteriorCingulateCortex.jsonld deleted file mode 100644 index 82cbcdfaa..000000000 --- a/instances/UBERONParcellation/anteriorCingulateCortex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCingulateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior cingulate cortex' is a regional part of brain. It is part of the cingulate cortex.", - "description": "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. http://en.wikipedia.org/wiki/File:Gray727.svg", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100689", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009835#anterior-cingulate-cortex", - "name": "anterior cingulate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009835", - "synonym": [ - "ACC", - "anterior cingulate" - ] -} diff --git a/instances/UBERONParcellation/anteriorCingulateGyrus.jsonld b/instances/UBERONParcellation/anteriorCingulateGyrus.jsonld deleted file mode 100644 index 2dcd82c40..000000000 --- a/instances/UBERONParcellation/anteriorCingulateGyrus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCingulateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior cingulate gyrus' is a gyrus. It is part of the cingulate gyrus and anterior cingulate cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100690", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002756#anterior-cingulate-gyrus-1", - "name": "anterior cingulate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002756", - "synonym": [ - "ACG", - "anterior cingulate", - "anterior division", - "cGa", - "cingulate gyrus", - "cortex cingularis anterior", - "gyrus cinguli anterior", - "gyrus limbicus anterior" - ] -} diff --git a/instances/UBERONParcellation/anteriorColumnOfFornix.jsonld b/instances/UBERONParcellation/anteriorColumnOfFornix.jsonld deleted file mode 100644 index 81acdbcb1..000000000 --- a/instances/UBERONParcellation/anteriorColumnOfFornix.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorColumnOfFornix", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior column of fornix' is a cerebral hemisphere white matter. It is part of the fornix of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100691", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002940#anterior-column-of-fornix-1", - "name": "anterior column of fornix", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002940", - "synonym": [ - "anterior column of fornix", - "anterior crus of fornix", - "anterior pillar of fornix", - "columna fornicis anterior", - "crus anterius", - "fornix" - ] -} diff --git a/instances/UBERONParcellation/anteriorCommissure.jsonld b/instances/UBERONParcellation/anteriorCommissure.jsonld deleted file mode 100644 index b329dbaf0..000000000 --- a/instances/UBERONParcellation/anteriorCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris).", - "description": "'Anterior commissure' is an intercerebral commissure and ventral commissure.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100692", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000935#anterior-commissure-1", - "name": "anterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000935", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorCommissureAnteriorPart.jsonld b/instances/UBERONParcellation/anteriorCommissureAnteriorPart.jsonld deleted file mode 100644 index 6cd04c1f2..000000000 --- a/instances/UBERONParcellation/anteriorCommissureAnteriorPart.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorCommissureAnteriorPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior commissure anterior part' is a commissure of telencephalon. It is part of the anterior commissure.", - "description": "The part of the anterior commissure that contains fibers interconnecting the anterior olfactory nucleus in each hemisphere. The fibers extend from the commissural region of the anterior commissure anteriorly into the olfactory bulb. Within the commissural portion, the fibers lie in the anterior portion, but cannot be easily distinguished from the posterior fibers on gross dissection. (Adapted from Heimer, 1996)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100693", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003039#anterior-commissure-anterior-part-1", - "name": "anterior commissure anterior part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003039", - "synonym": [ - "anterior commissure", - "anterior commissure olfactory limb", - "anterior commissure pars anterior", - "anterior part", - "anterior part of anterior commissure", - "commissura anterior", - "commissura rostralis", - "crus anterius", - "olfactory limb", - "olfactory limb of anterior commissure", - "olfactory part of anterior commissure", - "pars anterior", - "pars anterior commissurae anterioris", - "pars olfactoria", - "pars olfactoria commissurae anterioris" - ] -} diff --git a/instances/UBERONParcellation/anteriorHornOfLateralVentricle.jsonld b/instances/UBERONParcellation/anteriorHornOfLateralVentricle.jsonld deleted file mode 100644 index 704e0a5a7..000000000 --- a/instances/UBERONParcellation/anteriorHornOfLateralVentricle.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorHornOfLateralVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior horn of lateral ventricle' is a telencephalic ventricle.", - "description": "Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100702", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002651#anterior-horn-of-lateral-ventricle-1", - "name": "anterior horn of lateral ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002651", - "synonym": [ - "anterior horn of lateral ventricle", - "cornu anterius", - "cornu anterius (ventriculi lateralis)", - "cornu anterius ventriculi lateralis", - "cornu frontale (ventriculi lateralis)", - "cornu frontale ventriculi lateralis", - "frontal horn of lateral ventricle", - "ventriculus lateralis" - ] -} diff --git a/instances/UBERONParcellation/anteriorHypothalamicRegion.jsonld b/instances/UBERONParcellation/anteriorHypothalamicRegion.jsonld deleted file mode 100644 index 3a41530a9..000000000 --- a/instances/UBERONParcellation/anteriorHypothalamicRegion.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorHypothalamicRegion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100710", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002550#anterior-hypothalamic-region-1", - "name": "anterior hypothalamic region", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002550", - "synonym": [ - "AHR", - "anterior hypothalamic area", - "anterior hypothalamus", - "chiasmal zone", - "preoptic division" - ] -} diff --git a/instances/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld b/instances/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld deleted file mode 100644 index 4da5da205..000000000 --- a/instances/UBERONParcellation/anteriorLimbOfInternalCapsule.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorLimbOfInternalCapsule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior limb of internal capsule' is a limb of internal capsule of telencephalon.", - "description": "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100712", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014526#anterior-limb-of-internal-capsule-1", - "name": "anterior limb of internal capsule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014526", - "synonym": [ - "anterior internal capsule", - "anterior limb", - "capsula interna", - "crus anterius capsulae internae", - "pars anterior" - ] -} diff --git a/instances/UBERONParcellation/anteriorLobeOfCerebellum.jsonld b/instances/UBERONParcellation/anteriorLobeOfCerebellum.jsonld deleted file mode 100644 index 489eef19c..000000000 --- a/instances/UBERONParcellation/anteriorLobeOfCerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorLobeOfCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The region of the cerebellum that is anterior to the primary fissure.", - "description": "'Anterior lobe of cerebellum' is a cerebellum lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100713", - "knowledgeSpaceLink": null, - "name": "anterior lobe of cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002131", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorMedianEminence.jsonld b/instances/UBERONParcellation/anteriorMedianEminence.jsonld deleted file mode 100644 index 8bcb4aad3..000000000 --- a/instances/UBERONParcellation/anteriorMedianEminence.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorMedianEminence", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior median eminence' is a regional part of brain. It is part of the median eminence of neurohypophysis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100714", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002648#anterior-median-eminence-1", - "name": "anterior median eminence", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002648", - "synonym": [ - "AME", - "eminentia mediana anterior" - ] -} diff --git a/instances/UBERONParcellation/anteriorMedianOculomotorNucleus.jsonld b/instances/UBERONParcellation/anteriorMedianOculomotorNucleus.jsonld deleted file mode 100644 index 4abd8f348..000000000 --- a/instances/UBERONParcellation/anteriorMedianOculomotorNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorMedianOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior median oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100716", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002701#anterior-median-oculomotor-nucleus-1", - "name": "anterior median oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002701", - "synonym": [ - "AM3", - "anterior medial visceral nucleus", - "anterior median nucleus of oculomotor nerve", - "anterior median nucleus of oculomotor nuclear complex", - "nucleus anteromedialis", - "nucleus nervi oculomotorii medianus anterior", - "nucleus visceralis anteromedialis", - "ventral medial nucleus of oculomotor nerve", - "ventral medial visceral nucleus" - ] -} diff --git a/instances/UBERONParcellation/anteriorNuclearGroup.jsonld b/instances/UBERONParcellation/anteriorNuclearGroup.jsonld deleted file mode 100644 index 2f60b8e4b..000000000 --- a/instances/UBERONParcellation/anteriorNuclearGroup.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nuclear group' is a nucleus of dorsal thalamus.", - "description": "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100718", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002788#anterior-nuclear-group-1", - "name": "anterior nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002788", - "synonym": [ - "ANG", - "anterior group of thalamus", - "anterior group of the dorsal thalamus", - "anterior nuclear group", - "anterior nuclear group of thalamus", - "anterior nuclear group of the thalamus", - "anterior nuclei of thalamus", - "anterior nucleus of thalamus", - "anterior thalamic group", - "anterior thalamic nuclear group", - "anterior thalamic nuclei", - "anterior thalamic nucleus", - "anterior thalamus", - "dorsal thalamus anterior division", - "nuclei anterior thalami", - "nuclei anteriores (thalami)", - "nuclei anteriores thalami", - "nuclei thalamicus anterior", - "nucleus anterior thalami", - "nucleus thalamicus anterior", - "rostral thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/anteriorNucleusOfHypothalamus.jsonld b/instances/UBERONParcellation/anteriorNucleusOfHypothalamus.jsonld deleted file mode 100644 index 8f13eee5c..000000000 --- a/instances/UBERONParcellation/anteriorNucleusOfHypothalamus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNucleusOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nucleus of hypothalamus' is a preoptic nucleus.", - "description": "A loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100719", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002634#anterior-nucleus-of-hypothalamus-1", - "name": "anterior nucleus of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002634", - "synonym": [ - "AH", - "anterior hypothalamic area", - "anterior hypothalamic area anterior part", - "anterior hypothalamic nucleus", - "anterior nucleus of the hypothalamus", - "anterior part", - "area hypothalamica rostralis", - "fundamental gray substance", - "nucleus anterior hypothalami", - "nucleus hypothalamicus anterior", - "parvocellular nucleus of hypothalamus" - ] -} diff --git a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusCentralPart.jsonld b/instances/UBERONParcellation/anteriorNucleusOfHypothalamusCentralPart.jsonld deleted file mode 100644 index b7ed1f31e..000000000 --- a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusCentralPart.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNucleusOfHypothalamusCentralPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nucleus of hypothalamus central part' is a regional part of brain. It is part of the anterior nucleus of hypothalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100720", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014590#anterior-nucleus-of-hypothalamus-central-part-1", - "name": "anterior nucleus of hypothalamus central part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014590", - "synonym": [ - "AHNc", - "anterior hypothalamic area", - "anterior hypothalamic area central part", - "anterior hypothalamic central part", - "anterior hypothalamic nucleus", - "anterior hypothalamic nucleus central part", - "anterior nucleus of hypothalamus central part", - "central part" - ] -} diff --git a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusDorsalPart.jsonld b/instances/UBERONParcellation/anteriorNucleusOfHypothalamusDorsalPart.jsonld deleted file mode 100644 index 382175ef8..000000000 --- a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusDorsalPart.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNucleusOfHypothalamusDorsalPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nucleus of hypothalamus dorsal part' is a regional part of brain. It is part of the anterior nucleus of hypothalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100721", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014592#anterior-nucleus-of-hypothalamus-dorsal-part-1", - "name": "anterior nucleus of hypothalamus dorsal part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014592", - "synonym": [ - "AHNd", - "anterior hypothalamic dorsal part", - "anterior hypothalamic nucleus", - "anterior hypothalamic nucleus dorsal part", - "anterior nucleus of hypothalamus dorsal part", - "dorsal part" - ] -} diff --git a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusPosteriorPart.jsonld b/instances/UBERONParcellation/anteriorNucleusOfHypothalamusPosteriorPart.jsonld deleted file mode 100644 index 66777fbd9..000000000 --- a/instances/UBERONParcellation/anteriorNucleusOfHypothalamusPosteriorPart.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorNucleusOfHypothalamusPosteriorPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior nucleus of hypothalamus posterior part' is a regional part of brain. It is part of the anterior nucleus of hypothalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100722", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014591#anterior-nucleus-of-hypothalamus-posterior-part-1", - "name": "anterior nucleus of hypothalamus posterior part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014591", - "synonym": [ - "AHNp", - "anterior hypothalamic nucleus", - "anterior hypothalamic nucleus posterior part", - "anterior hypothalamic posterior part", - "anterior nucleus of hypothalamus posterior part", - "posterior part" - ] -} diff --git a/instances/UBERONParcellation/anteriorOlfactoryNucleus.jsonld b/instances/UBERONParcellation/anteriorOlfactoryNucleus.jsonld deleted file mode 100644 index 5e8061ffe..000000000 --- a/instances/UBERONParcellation/anteriorOlfactoryNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorOlfactoryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior olfactory nucleus' is a telencephalic nucleus. It is part of the olfactory cortex.", - "description": "Laminated structure lying caudal to the olfactory bulb.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100724", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002266#anterior-olfactory-nucleus-1", - "name": "anterior olfactory nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002266", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorParietooccipitalSulcus.jsonld b/instances/UBERONParcellation/anteriorParietooccipitalSulcus.jsonld deleted file mode 100644 index 815aec868..000000000 --- a/instances/UBERONParcellation/anteriorParietooccipitalSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorParietooccipitalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior parieto-occipital sulcus' is a sulcus of brain. It is part of the parieto-occipital sulcus.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100736", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0025829#anterior-parieto-occipital-sulcus-1", - "name": "anterior parieto-occipital sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025829", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorPerforatedSubstance.jsonld b/instances/UBERONParcellation/anteriorPerforatedSubstance.jsonld deleted file mode 100644 index 69df92f98..000000000 --- a/instances/UBERONParcellation/anteriorPerforatedSubstance.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorPerforatedSubstance", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior perforated substance' is a regional part of brain. It is part of the telencephalon.", - "description": "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100738", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0018141#anterior-perforated-substance-1", - "name": "anterior perforated substance", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0018141", - "synonym": [ - "anterior perforated area", - "anterior perforated space", - "area olfactoria (Mai)", - "eminentia parolfactoria", - "olfactory area (Carpenter)", - "olfactory area (Mai)", - "olfactory tubercle", - "olfactory tubercle (Ganser)", - "rostral perforated substance", - "substantia perforata anterior", - "tuber olfactorium" - ] -} diff --git a/instances/UBERONParcellation/anteriorPretectalNucleus.jsonld b/instances/UBERONParcellation/anteriorPretectalNucleus.jsonld deleted file mode 100644 index 2294dbeed..000000000 --- a/instances/UBERONParcellation/anteriorPretectalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorPretectalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Anterior pretectal nucleus' is a nucleus of midbrain tectum and pretectal nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100741", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034918#anterior-pretectal-nucleus-1", - "name": "anterior pretectal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034918", - "synonym": [ - "anterior (ventral /principal) pretectal nucleus", - "anterior pretectal nucleus" - ] -} diff --git a/instances/UBERONParcellation/anteriorQuadrangularLobule.jsonld b/instances/UBERONParcellation/anteriorQuadrangularLobule.jsonld deleted file mode 100644 index 4660cc3a5..000000000 --- a/instances/UBERONParcellation/anteriorQuadrangularLobule.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorQuadrangularLobule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Anterior quadrangular lobule' is a cerebellum hemisphere lobule.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100743", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003015#anterior-quadrangular-lobule-1", - "name": "anterior quadrangular lobule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003015", - "synonym": null -} diff --git a/instances/UBERONParcellation/anteriorThalamicRadiation.jsonld b/instances/UBERONParcellation/anteriorThalamicRadiation.jsonld deleted file mode 100644 index 6243d5d0b..000000000 --- a/instances/UBERONParcellation/anteriorThalamicRadiation.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/anteriorThalamicRadiation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'anterior thalamic radiation' is a white matter fibre bundle. 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It is part of the pallium.", - "description": "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100877", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007350#arcopallium", - "name": "arcopallium", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007350", - "synonym": [ - "A", - "amygdaloid complex", - "arched pallium", - "archistriatum", - "Arcopallium", - "epistriatum" - ] -} diff --git a/instances/UBERONParcellation/arcuateFasciculus.jsonld b/instances/UBERONParcellation/arcuateFasciculus.jsonld deleted file mode 100644 index af9838c3f..000000000 --- a/instances/UBERONParcellation/arcuateFasciculus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arcuateFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'arcuate fasciculus' is a white matter fibre bundle connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain. 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The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100888", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002162#area-postrema-1", - "name": "area postrema", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002162", - "synonym": null -} diff --git a/instances/UBERONParcellation/areaXOfBasalGanglion.jsonld b/instances/UBERONParcellation/areaXOfBasalGanglion.jsonld deleted file mode 100644 index e9c5149b0..000000000 --- a/instances/UBERONParcellation/areaXOfBasalGanglion.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/areaXOfBasalGanglion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Area X of basal ganglion' is a nucleus of brain. It is part of the basal ganglion.", - "description": "A nucleus in the basal ganglion of songbirds.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731535", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035807#area-x-of-basal-ganglion", - "name": "area X of basal ganglion", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035807", - "synonym": null -} diff --git a/instances/UBERONParcellation/areaXOfVentralLateralNucleus.jsonld b/instances/UBERONParcellation/areaXOfVentralLateralNucleus.jsonld deleted file mode 100644 index a7cfb120c..000000000 --- a/instances/UBERONParcellation/areaXOfVentralLateralNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/areaXOfVentralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Area X of ventral lateral nucleus' is a gray matter of diencephalon. It is part of the ventral lateral nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100891", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002687#area-x", - "name": "area X of ventral lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002687", - "synonym": [ - "anteromedial part of ventral lateral posterior nucleus (jones)", - "area X", - "area X of Olszewski", - "nucleus lateralis intermedius mediodorsalis situs ventralis medialis", - "nucleus ventralis oralis", - "nucleus ventro-oralis internus (Hassler)", - "nucleus ventrooralis internus", - "nucleus ventrooralis internus (Hassler)", - "pars posterior (Dewulf)", - "pars posterior (dewulf)", - "superior part", - "X" - ] -} diff --git a/instances/UBERONParcellation/arthropodOpticLobe.jsonld b/instances/UBERONParcellation/arthropodOpticLobe.jsonld deleted file mode 100644 index e176b5cdc..000000000 --- a/instances/UBERONParcellation/arthropodOpticLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/arthropodOpticLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Arthropod optic lobe' is a visual processing part of nervous system. It is part of the brain.", - "description": "A region of the adult brain that processes the visual information from the compound eyes.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732637", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006795#arthropod-optic-lobe", - "name": "arthropod optic lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006795", - "synonym": null -} diff --git a/instances/UBERONParcellation/auditoryCortex.jsonld b/instances/UBERONParcellation/auditoryCortex.jsonld deleted file mode 100644 index 15efc35ad..000000000 --- a/instances/UBERONParcellation/auditoryCortex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/auditoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The auditory cortex consists of neocortical areas that are functionally activated predominantly to sound, with the shortest latency.", - "description": "The auditory cortex is the part of the temporal lobe that processes auditory information in humans and other vertebrates. It is a part of the auditory system, performing basic and higher functions in hearing, such as possible relations to language switching.It is located bilaterally, roughly at the upper sides of the temporal lobes – in humans on the superior temporal plane, within the lateral fissure and comprising parts of Heschl's gyrus and the superior temporal gyrus, including planum polare and planum temporale (roughly Brodmann areas 41, 42, and partially 22). Unilateral destruction, in a region of the auditory pathway above the cochlear nucleus, results in slight hearing loss, whereas bilateral destruction results in cortical deafness.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100996", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001393#auditory-cortex", - "name": "auditory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001393", - "synonym": null -} diff --git a/instances/UBERONParcellation/banksOfSuperiorTemporalSulcus.jsonld b/instances/UBERONParcellation/banksOfSuperiorTemporalSulcus.jsonld deleted file mode 100644 index dec8f4c6e..000000000 --- a/instances/UBERONParcellation/banksOfSuperiorTemporalSulcus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/banksOfSuperiorTemporalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Banks of superior temporal sulcus' is an anatomical entity. It is part of the superior temporal sulcus.", - "description": "Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101088", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0028622#banks-of-superior-temporal-sulcus-1", - "name": "banks of superior temporal sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0028622", - "synonym": [ - "banks of superior temporal sulcus" - ] -} diff --git a/instances/UBERONParcellation/barrelCortex.jsonld b/instances/UBERONParcellation/barrelCortex.jsonld deleted file mode 100644 index 024e34d23..000000000 --- a/instances/UBERONParcellation/barrelCortex.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/barrelCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Barrel cortex' is a functional part of brain. It is part of the primary somatosensory cortex.", - "description": "The term primary somatosensory area, barrel field refers to one of 6 subdivisions of the primary somesthetic area of the cerebral cortex in the mouse (Dong-2004) and the rat (Swanson-2004). It is defined as dark-staining regions in Nissl and other types of stains of layer four of the somatosensory cortex of rodents where somatosensory inputs from the contralateral side of the body come in from the thalamus, in particular input from the whiskers. Each barrel ranges in size from 100-400 um in diameter. (modified from BrainInfo and Wikipedia)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101097", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010415#barrel-cortex", - "name": "barrel cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010415", - "synonym": [ - "barrel cortex", - "barrel field", - "barrel field of the primary somatosensory area", - "barrel field sensory area", - "primary somatosensory area", - "primary somatosensory area barrel field", - "primary somatosensory cortex", - "whisker barrels", - "whisker sensory area" - ] -} diff --git a/instances/UBERONParcellation/basalAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/basalAmygdaloidNucleus.jsonld deleted file mode 100644 index 9ed712400..000000000 --- a/instances/UBERONParcellation/basalAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal amygdaloid nucleus' is a telencephalic nucleus. It is part of the basolateral amygdaloid nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101100", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002887#basal-amygdaloid-nucleus-1", - "name": "basal amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002887", - "synonym": [ - "basal nucleus of the amygdala", - "basolateral amygaloid nucleus", - "basolateral amygdalar nucleus", - "basolateral amygdaloid nucleus", - "basolateral nucleus (De Olmos)", - "basolateral nucleus of amygdala", - "basolateral nucleus of the amygdala", - "intermediate principal nucleus", - "nucleus amygdalae basalis", - "nucleus amygdalae basalis lateralis", - "nucleus amygdaloideus basalis", - "nucleus amygdaloideus basolateralis", - "nucleus basalis amygdalae" - ] -} diff --git a/instances/UBERONParcellation/basalForebrain.jsonld b/instances/UBERONParcellation/basalForebrain.jsonld deleted file mode 100644 index dad3401f9..000000000 --- a/instances/UBERONParcellation/basalForebrain.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalForebrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal forebrain' is a regional part of brain. It is part of the forebrain.", - "description": "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101101", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002743#basal-forebrain-1", - "name": "basal forebrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002743", - "synonym": [ - "basal forebrain area", - "pars basalis telencephali" - ] -} diff --git a/instances/UBERONParcellation/basalGanglion.jsonld b/instances/UBERONParcellation/basalGanglion.jsonld deleted file mode 100644 index 11ba7892b..000000000 --- a/instances/UBERONParcellation/basalGanglion.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalGanglion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal ganglion' is a brain gray matter and nuclear complex of neuraxis. It is part of the collection of basal ganglia.", - "description": "An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729164", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002420#basal-ganglion", - "name": "basal ganglion", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002420", - "synonym": null -} diff --git a/instances/UBERONParcellation/basalNuclearComplex.jsonld b/instances/UBERONParcellation/basalNuclearComplex.jsonld deleted file mode 100644 index dce7c55c6..000000000 --- a/instances/UBERONParcellation/basalNuclearComplex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal nuclear complex' is a nuclear complex of neuraxis and gray matter of forebrain. It is part of the basal forebrain.", - "description": "The deep nuclei of telencephalic origin found in the basal region of the forebrain, The deep nuclei found in the basal forebrain.Large subcortical nuclear masses derived from the telencephalon and located in the basal regions of the cerebral hemispheres. (MeSH definition of Basal Ganglia in UMLS).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101108", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006098#basal-nuclear-complex-1", - "name": "basal nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006098", - "synonym": [ - "basal ganglia", - "basal ganglia (anatomic)", - "basal nuclei", - "basal nuclei of the forebrain", - "corpus striatum (Savel'ev)", - "ganglia basales" - ] -} diff --git a/instances/UBERONParcellation/basalNucleusOfTelencephalon.jsonld b/instances/UBERONParcellation/basalNucleusOfTelencephalon.jsonld deleted file mode 100644 index 3ac5a3924..000000000 --- a/instances/UBERONParcellation/basalNucleusOfTelencephalon.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalNucleusOfTelencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal nucleus of telencephalon' is a telencephalic nucleus. It is part of the substantia innominata.", - "description": "One of four major groupings of cholinergic neurons in the basal forebrain containing neurons that project widely to the cortex and amygdala (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 3rd ed, 2005, pg 488)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101109", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010010#basal-nucleus", - "name": "basal nucleus of telencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010010", - "synonym": [ - "basal forebrain nucleus", - "basal magnocellular nucleus", - "basal magnocellular nucleus (substantia innominata)", - "basal nuclei of Meynert", - "basal nucleus", - "basal nucleus (Meynert)", - "basal nucleus of Meynert", - "basal substance of telencephalon", - "Ch4", - "ganglion of Meynert", - "magnocellular basal nucleus", - "magnocellular nucleus of the pallidum", - "magnocellular preoptic nucleus", - "Meynert's nucleus", - "nucleus basalis", - "nucleus basalis (Meynert)", - "nucleus basalis Meynert", - "Nucleus basalis of Meynert", - "nucleus basalis telencephali", - "nucleus of the horizontal limb of the diagonal band (Price-Powell)", - "substantia basalis telencephali" - ] -} diff --git a/instances/UBERONParcellation/basalPartOfPons.jsonld b/instances/UBERONParcellation/basalPartOfPons.jsonld deleted file mode 100644 index 8eceb9678..000000000 --- a/instances/UBERONParcellation/basalPartOfPons.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basalPartOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basal part of pons' is a regional part of brain. It is part of the pons.", - "description": "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101110", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002567#basal-part-of-pons-1", - "name": "basal part of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002567", - "synonym": [ - "basal part of the pons", - "basal portion of pons", - "base of pons", - "basilar part of pons", - "basilar pons", - "basis pontis", - "pars anterior pontis", - "pars basilaris pontis", - "pars ventralis pontis", - "pons proper", - "ventral pons", - "ventral portion of pons" - ] -} diff --git a/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld b/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld deleted file mode 100644 index c3ac56c14..000000000 --- a/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/basolateralAmygdaloidNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Basolateral amygdaloid nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the amygdala.", - "description": "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101128", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006107#basolateral-nuclear-complex", - "name": "basolateral amygdaloid nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006107", - "synonym": [ - "amygdalar basolateral nucleus", - "amygdaloid basolateral complex", - "basolateral amygdala", - "basolateral amygdaloid nuclear complex", - "basolateral complex", - "basolateral nuclear complex", - "basolateral nuclear group", - "basolateral nuclei of amygdala", - "basolateral subdivision of amygdala", - "BL", - "deep nuclei", - "pars basolateralis (Corpus amygdaloideum)", - "set of basolateral nuclei of amygdala", - "vicarious cortex" - ] -} diff --git a/instances/UBERONParcellation/bedNucleusOfStriaTerminalis.jsonld b/instances/UBERONParcellation/bedNucleusOfStriaTerminalis.jsonld deleted file mode 100644 index 61046957d..000000000 --- a/instances/UBERONParcellation/bedNucleusOfStriaTerminalis.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bedNucleusOfStriaTerminalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Bed nucleus of stria terminalis' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": "Nucleus defined on the basis of Nissl stain whose cells are embedded in, and surround the stria terminalis at its rostral extreme, where it splits into multiple bundles directed ventrally toward different parts of the hypothalamus. The nucleus wraps around the anterior commissure. It is bounded laterally by the internal capsule, medially by the lateral septal nucleus and the anterior column of the fornix, and dorsally by the head of the caudate nucleus and the frontal horn of the lateral ventricle. Some authors have expanded the definition on the basis of other stains and connectivity studies to include cell groups distributed through the dorsal part of substantia innominata between the classical nucleus and the amygdala. The extended nucleus of stria terminalis by that definition is classified as part of the extended amygdala ( Olmos-2004 ). The nucleus is found in the human, the macaque, the rat and the mouse. Adapted from Brain Info.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101180", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001880#bed-nucleus-of-stria-terminalis-1", - "name": "bed nucleus of stria terminalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001880", - "synonym": [ - "bed nuclei of the stria terminalis", - "bed nucleus of stria terminalis", - "bed nucleus of the stria terminalis", - "bed nucleus stria terminalis (Johnson)", - "bed nucleus striae terminalis", - "BST", - "intercalate nucleus of stria terminalis", - "interstitial nucleus of stria terminalis", - "nuclei of stria terminalis", - "nucleus interstitialis striae terminalis", - "nucleus of stria terminalis", - "nucleus of the stria terminalis", - "nucleus proprius stria terminalis (bed nucleus)", - "nucleus striae terminalis", - "stria terminalis nucleus" - ] -} diff --git a/instances/UBERONParcellation/bloodcerebrospinalFluidBarrier.jsonld b/instances/UBERONParcellation/bloodcerebrospinalFluidBarrier.jsonld deleted file mode 100644 index b6af0dfec..000000000 --- a/instances/UBERONParcellation/bloodcerebrospinalFluidBarrier.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bloodcerebrospinalFluidBarrier", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Blood-cerebrospinal fluid barrier' is part of the choroid plexus.", - "description": "Barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729920", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003210#blood-cerebrospinal-fluid-barrier", - "name": "blood-cerebrospinal fluid barrier", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003210", - "synonym": null -} diff --git a/instances/UBERONParcellation/bodyOfCaudateNucleus.jsonld b/instances/UBERONParcellation/bodyOfCaudateNucleus.jsonld deleted file mode 100644 index 0dc0bd563..000000000 --- a/instances/UBERONParcellation/bodyOfCaudateNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Body of caudate nucleus' is a gray matter of telencephalon. It is part of the caudate nucleus.", - "description": "Part of caudate nucleus lying just dorsal to the thalamus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101372", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002630#body-of-caudate-nucleus-1", - "name": "body of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002630", - "synonym": [ - "body of the caudate nucleus", - "caudate body", - "caudate nuclear body", - "corpus (caudatus)", - "corpus nuclei caudati" - ] -} diff --git a/instances/UBERONParcellation/bodyOfCorpusCallosum.jsonld b/instances/UBERONParcellation/bodyOfCorpusCallosum.jsonld deleted file mode 100644 index b2caf5c71..000000000 --- a/instances/UBERONParcellation/bodyOfCorpusCallosum.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfCorpusCallosum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'body of corpus callosum' is a white matter structure. It is part of the corpus callosum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728551", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015510#body-of-corpus-callosum", - "name": "body of corpus callosum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015510", - "synonym": [ - "corpus callosum body", - "corpus callosum corpus", - "corpus callosum truncus", - "trunculus corporis callosi", - "truncus corporis callosi", - "truncus corpus callosi", - "trunk of corpus callosum" - ] -} diff --git a/instances/UBERONParcellation/bodyOfFornix.jsonld b/instances/UBERONParcellation/bodyOfFornix.jsonld deleted file mode 100644 index d930850fa..000000000 --- a/instances/UBERONParcellation/bodyOfFornix.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfFornix", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Body of fornix' is a central nervous system cell part cluster. It is part of the fornix of brain.", - "description": "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101373", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004680#body-of-fornix-1", - "name": "body of fornix", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004680", - "synonym": [ - "body of fornix", - "body of fornix of forebrain", - "column of fornix", - "columna fornicis", - "columns of fornix", - "columns of the fornix", - "fornix body" - ] -} diff --git a/instances/UBERONParcellation/bodyOfLateralVentricle.jsonld b/instances/UBERONParcellation/bodyOfLateralVentricle.jsonld deleted file mode 100644 index 232046682..000000000 --- a/instances/UBERONParcellation/bodyOfLateralVentricle.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/bodyOfLateralVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Body of lateral ventricle' is a telencephalic ventricle.", - "description": "Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101374", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002655#body-of-lateral-ventricle-1", - "name": "body of lateral ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002655", - "synonym": [ - "central part of lateral ventricle", - "corpus", - "corpus ventriculi lateralis", - "lateral ventricular body", - "pars centralis", - "pars centralis (ventriculi lateralis)", - "pars centralis ventriculi lateralis", - "ventriculus lateralis" - ] -} diff --git a/instances/UBERONParcellation/brachiumOfInferiorColliculus.jsonld b/instances/UBERONParcellation/brachiumOfInferiorColliculus.jsonld deleted file mode 100644 index f3f54ac76..000000000 --- a/instances/UBERONParcellation/brachiumOfInferiorColliculus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brachiumOfInferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brachium of inferior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the inferior colliculus and white matter.", - "description": "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101409", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003025#brachium-of-inferior-colliculus-1", - "name": "brachium of inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003025", - "synonym": [ - "brachium colliculi caudalis", - "brachium colliculi inferioris", - "brachium of medial geniculate", - "brachium of the inferior colliculus", - "brachium quadrigeminum inferius", - "inferior brachium", - "inferior collicular brachium", - "inferior colliculus brachium", - "inferior quadrigeminal brachium", - "nucleus of the brachium of the inferior colliculus", - "peduncle of inferior colliculus" - ] -} diff --git a/instances/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld b/instances/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld deleted file mode 100644 index 2046772c1..000000000 --- a/instances/UBERONParcellation/brachiumOfSuperiorColliculus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brachiumOfSuperiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brachium of superior colliculus' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of superior colliculus.", - "description": "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101410", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002580#brachium-of-superior-colliculus-1", - "name": "brachium of superior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002580", - "synonym": [ - "brachium colliculi cranialis", - "brachium colliculi rostralis", - "brachium colliculi superioris", - "brachium of the superior colliculus", - "brachium quadrigeminum superius", - "superior brachium", - "superior collicular brachium", - "superior colliculus brachium", - "superior quadrigeminal brachium" - ] -} diff --git a/instances/UBERONParcellation/brainBloodVessel.jsonld b/instances/UBERONParcellation/brainBloodVessel.jsonld deleted file mode 100644 index 188dfcb68..000000000 --- a/instances/UBERONParcellation/brainBloodVessel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainBloodVessel", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain blood vessel' is part of the vasculature of brain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726967", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003499#brain-blood-vessel", - "name": "brain blood vessel", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003499", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainEndothelium.jsonld b/instances/UBERONParcellation/brainEndothelium.jsonld deleted file mode 100644 index f3426c93b..000000000 --- a/instances/UBERONParcellation/brainEndothelium.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainEndothelium", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain endothelium' is part of the brain.", - "description": "Vascular endothelium found in blood vessels of the blood-brain-barrier.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733041", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013694#brain-endothelium", - "name": "brain endothelium", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013694", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainEpendyma.jsonld b/instances/UBERONParcellation/brainEpendyma.jsonld deleted file mode 100644 index 6137348b5..000000000 --- a/instances/UBERONParcellation/brainEpendyma.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainEpendyma", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain ependyma' is an ependyma. It is part of the brain ventricle.", - "description": "The ependymal cell layer that lines the brain ventricles.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730349", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005357#brain-ependyma", - "name": "brain ependyma", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005357", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainGrayMatter.jsonld b/instances/UBERONParcellation/brainGrayMatter.jsonld deleted file mode 100644 index f0ee509f3..000000000 --- a/instances/UBERONParcellation/brainGrayMatter.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainGrayMatter", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain gray matter' is a gray matter. It is part of the brain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725337", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003528#brain-gray-matter", - "name": "brain gray matter", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003528", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainMarginalZone.jsonld b/instances/UBERONParcellation/brainMarginalZone.jsonld deleted file mode 100644 index 886e323cf..000000000 --- a/instances/UBERONParcellation/brainMarginalZone.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainMarginalZone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain marginal zone' is an anatomical entity. It is part of the brain.", - "description": "The part of the future brain that is derived from the mantle layer of the neural tube.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734549", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010403#brain-marginal-zone", - "name": "brain marginal zone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010403", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainMeninx.jsonld b/instances/UBERONParcellation/brainMeninx.jsonld deleted file mode 100644 index 4822851d7..000000000 --- a/instances/UBERONParcellation/brainMeninx.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainMeninx", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain meninx' is a meninx. It is part of the brain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726394", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003547#brain-meninx", - "name": "brain meninx", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003547", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainVentricle.jsonld b/instances/UBERONParcellation/brainVentricle.jsonld deleted file mode 100644 index b2920adb7..000000000 --- a/instances/UBERONParcellation/brainVentricle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain ventricle' is a brain ventricle/choroid plexus and ventricle of nervous system. It is part of the ventricular system of brain.", - "description": "One of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730602", - "knowledgeSpaceLink": null, - "name": "brain ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004086", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainVentriclechoroidPlexus.jsonld b/instances/UBERONParcellation/brainVentriclechoroidPlexus.jsonld deleted file mode 100644 index 77166132e..000000000 --- a/instances/UBERONParcellation/brainVentriclechoroidPlexus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainVentriclechoroidPlexus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain ventricle/choroid plexus' is part of the brain.", - "description": "The brain ventricles or their associated choroid plexuses.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730467", - "knowledgeSpaceLink": null, - "name": "brain ventricle/choroid plexus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003947", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainWhiteMatter.jsonld b/instances/UBERONParcellation/brainWhiteMatter.jsonld deleted file mode 100644 index c6d9c45d2..000000000 --- a/instances/UBERONParcellation/brainWhiteMatter.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainWhiteMatter", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brain white matter' is a white matter. It is part of the brain.", - "description": "The regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736416", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003544#brain-white-matter", - "name": "brain white matter", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003544", - "synonym": null -} diff --git a/instances/UBERONParcellation/brainstem.jsonld b/instances/UBERONParcellation/brainstem.jsonld deleted file mode 100644 index de0f8fa85..000000000 --- a/instances/UBERONParcellation/brainstem.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/brainstem", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Brainstem' is a regional part of brain.", - "description": "The lower portion of the brain through which the forebrain sends information to, and receives information from, the spinal cord and peripheral nerves. Major functions located in the brainstem include those necessary for survival, e.g., breathing, heart rate, blood pressure, and arousal. (NIDA Media Guide Glossary). Note that the definition of brainstem varies in different nomenclatures, for example, some definitions include the diencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101444", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002298#brainstem-1", - "name": "brainstem", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002298", - "synonym": [ - "accessory medullary lamina of pallidum", - "brain stem", - "lamella pallidi incompleta", - "lamina medullaris accessoria", - "lamina medullaris incompleta pallidi", - "lamina pallidi incompleta", - "truncus encephali", - "truncus encephalicus" - ] -} diff --git a/instances/UBERONParcellation/calcarineSulcus.jsonld b/instances/UBERONParcellation/calcarineSulcus.jsonld deleted file mode 100644 index a7616d12b..000000000 --- a/instances/UBERONParcellation/calcarineSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/calcarineSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Calcarine sulcus' is a sulcus of brain. It is part of the cerebral cortex.", - "description": "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101552", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002586#calcarine-sulcus-1", - "name": "calcarine sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002586", - "synonym": null -} diff --git a/instances/UBERONParcellation/calcifiedStructureOfBrain.jsonld b/instances/UBERONParcellation/calcifiedStructureOfBrain.jsonld deleted file mode 100644 index 0957ade90..000000000 --- a/instances/UBERONParcellation/calcifiedStructureOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/calcifiedStructureOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Calcified structure of brain' is part of the brain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731107", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0017631#calcified-structure-of-brain", - "name": "calcified structure of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0017631", - "synonym": null -} diff --git a/instances/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld b/instances/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld deleted file mode 100644 index 054f59406..000000000 --- a/instances/UBERONParcellation/capsuleOfMedialGeniculateBody.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/capsuleOfMedialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Capsule of medial geniculate body' is a diencephalic white matter. It is part of the medial geniculate body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101644", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002627#capsule-of-medial-geniculate-body-1", - "name": "capsule of medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002627", - "synonym": [ - "capsula corporis geniculati medialis", - "capsule of the medial geniculate body", - "medial geniculate body capsule" - ] -} diff --git a/instances/UBERONParcellation/capsuleOfRedNucleus.jsonld b/instances/UBERONParcellation/capsuleOfRedNucleus.jsonld deleted file mode 100644 index 14509bacf..000000000 --- a/instances/UBERONParcellation/capsuleOfRedNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/capsuleOfRedNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Capsule of red nucleus' is a brainstem white matter and white matter of midbrain. It is part of the red nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101645", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002941#capsule-of-red-nucleus-1", - "name": "capsule of red nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002941", - "synonym": [ - "capsula", - "capsula nuclei rubris tegmenti", - "capsule of the red nucleus", - "cr", - "nucleus ruber", - "red nuclear capsule" - ] -} diff --git a/instances/UBERONParcellation/caudalAnteriorCingulateCortex.jsonld b/instances/UBERONParcellation/caudalAnteriorCingulateCortex.jsonld deleted file mode 100644 index 570169c2e..000000000 --- a/instances/UBERONParcellation/caudalAnteriorCingulateCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalAnteriorCingulateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal anterior cingulate cortex' is a regional part of brain. It is part of the anterior cingulate cortex.", - "description": "Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101709", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0028715#caudal-anterior-cingulate-cortex-1", - "name": "caudal anterior cingulate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0028715", - "synonym": [ - "caudal anterior cingulate cortex" - ] -} diff --git a/instances/UBERONParcellation/caudalCentralOculomotorNucleus.jsonld b/instances/UBERONParcellation/caudalCentralOculomotorNucleus.jsonld deleted file mode 100644 index a204176fc..000000000 --- a/instances/UBERONParcellation/caudalCentralOculomotorNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalCentralOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal central oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101711", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002957#caudal-central-oculomotor-nucleus-1", - "name": "caudal central oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002957", - "synonym": [ - "caudal central nucleus", - "caudal central nucleus of oculomotor nerve", - "CC3", - "nucleus caudalis centralis oculomotorii", - "nucleus centralis nervi oculomotorii", - "oculomotor nerve central caudal nucleus" - ] -} diff --git a/instances/UBERONParcellation/caudalMiddleFrontalGyrus.jsonld b/instances/UBERONParcellation/caudalMiddleFrontalGyrus.jsonld deleted file mode 100644 index 6ffe953b5..000000000 --- a/instances/UBERONParcellation/caudalMiddleFrontalGyrus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalMiddleFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal middle frontal gyrus' is a frontal gyrus. It is part of the middle frontal gyrus.", - "description": "Component of the middl frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101718", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006445#caudal-middle-frontal-gyrus-1", - "name": "caudal middle frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006445", - "synonym": [ - "caudal middle frontal gyrus", - "caudal part of middle frontal gyrus", - "posterior part of middle frontal gyrus" - ] -} diff --git a/instances/UBERONParcellation/caudalPartOfSpinalTrigeminalNucleus.jsonld b/instances/UBERONParcellation/caudalPartOfSpinalTrigeminalNucleus.jsonld deleted file mode 100644 index b58898841..000000000 --- a/instances/UBERONParcellation/caudalPartOfSpinalTrigeminalNucleus.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalPartOfSpinalTrigeminalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal part of spinal trigeminal nucleus' is a gray matter of hindbrain. It is part of the spinal nucleus of trigeminal nerve.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101721", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002866#caudal-part-of-spinal-trigeminal-nucleus-1", - "name": "caudal part of spinal trigeminal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002866", - "synonym": [ - "caudal nucleus", - "caudal nucleus (kandell)", - "Caudal nucleus (Kandell)", - "caudal part", - "caudal part of the spinal trigeminal nucleus", - "CSp5", - "nucleus caudalis tractus spinalis nervi trigemini", - "nucleus spinalis nervi trigemini", - "pars caudalis", - "spinal nucleus of the trigeminal", - "spinal nucleus of the trigeminal caudal part", - "spinal nucleus of the trigeminal nerve caudal part", - "spinal trigeminal nucleus", - "spinal trigeminal nucleus caudal part", - "subnucleus caudalis", - "trigeminal caudal nucleus" - ] -} diff --git a/instances/UBERONParcellation/caudalPartOfVentralLateralNucleus.jsonld b/instances/UBERONParcellation/caudalPartOfVentralLateralNucleus.jsonld deleted file mode 100644 index 2ec2a26ba..000000000 --- a/instances/UBERONParcellation/caudalPartOfVentralLateralNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalPartOfVentralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal part of ventral lateral nucleus' is a gray matter of diencephalon. It is part of the ventral lateral nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101722", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002608#caudal-part-of-ventral-lateral-nucleus-1", - "name": "caudal part of ventral lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002608", - "synonym": [ - "caudal part", - "caudal part of the ventral lateral nucleus", - "dorsal part of ventral lateral posterior nucleus (Jones)", - "nucleus dorsooralis (van buren)", - "nucleus lateralis intermedius mediodorsalis situs dorsalis", - "nucleus ventralis lateralis", - "pars caudalis", - "ventral lateral nucleus", - "ventral lateral thalamic nucleus", - "VLC" - ] -} diff --git a/instances/UBERONParcellation/caudalPartOfVentralPosterolateralNucleusOfThalamus.jsonld b/instances/UBERONParcellation/caudalPartOfVentralPosterolateralNucleusOfThalamus.jsonld deleted file mode 100644 index c8b5051fb..000000000 --- a/instances/UBERONParcellation/caudalPartOfVentralPosterolateralNucleusOfThalamus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalPartOfVentralPosterolateralNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal part of ventral posterolateral nucleus of thalamus' is a gray matter of diencephalon. It is part of the ventral posterolateral nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101723", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002781#caudal-part-of-ventral-posterolateral-nucleus", - "name": "caudal part of ventral posterolateral nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002781", - "synonym": [ - "caudal part", - "caudal part of the ventral posterolateral nucleus", - "caudal part of ventral posterolateral nucleus", - "nucleus ventralis caudalis lateralis", - "nucleus ventralis posterior lateralis", - "nucleus ventralis posterior pars lateralis (Dewulf)", - "nucleus ventralis posterolateralis (Walker)", - "nucleus ventrocaudalis externus (Van Buren)", - "pars caudalis", - "posterior part", - "ventral posterior lateral nucleus (ilinsky)", - "ventral posterolateral nucleus", - "ventral posterolateral thalamic nucleus", - "VPLC" - ] -} diff --git a/instances/UBERONParcellation/caudalPontineReticularNucleus.jsonld b/instances/UBERONParcellation/caudalPontineReticularNucleus.jsonld deleted file mode 100644 index 7f8448a20..000000000 --- a/instances/UBERONParcellation/caudalPontineReticularNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudalPontineReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudal pontine reticular nucleus' is a nucleus of pontine reticular formation.", - "description": "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101725", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002963#caudal-pontine-reticular-nucleus-1", - "name": "caudal pontine reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002963", - "synonym": [ - "caudal part", - "nucleus reticularis pontis caudalis", - "PnC", - "pontine reticular nucleus", - "pontine reticular nucleus caudal part" - ] -} diff --git a/instances/UBERONParcellation/caudateNucleus.jsonld b/instances/UBERONParcellation/caudateNucleus.jsonld deleted file mode 100644 index c58d79139..000000000 --- a/instances/UBERONParcellation/caudateNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudate nucleus' is a telencephalic nucleus. It is part of the caudate-putamen.", - "description": "Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101734", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001873#caudate-nucleus-1", - "name": "caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001873", - "synonym": [ - "Ammon horn fields", - "Caudate", - "caudatum", - "caudatus", - "Cd", - "nucleus caudatus" - ] -} diff --git a/instances/UBERONParcellation/caudateputamen.jsonld b/instances/UBERONParcellation/caudateputamen.jsonld deleted file mode 100644 index a9b9aca22..000000000 --- a/instances/UBERONParcellation/caudateputamen.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/caudateputamen", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Caudate-putamen' is a central nervous system cell part cluster. It is part of the dorsal striatum.", - "description": "Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101739", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005383#caudoputamen", - "name": "caudate-putamen", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005383", - "synonym": [ - "caudate putamen", - "caudate putamen (striatum)", - "Caudate-putamen", - "caudateputamen", - "caudoputamen", - "dorsal striatum", - "neostriatum", - "striatum" - ] -} diff --git a/instances/UBERONParcellation/centralAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/centralAmygdaloidNucleus.jsonld deleted file mode 100644 index 020bb7a6b..000000000 --- a/instances/UBERONParcellation/centralAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central amygdaloid nucleus' is a telencephalic nucleus. It is part of the amygdala.", - "description": "The output region of the amygdala responsible for controlling responses (Phelps & LeDoux, 2005, PMID: 16242399).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101887", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002883#central-amygdaloid-nucleus-1", - "name": "central amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002883", - "synonym": [ - "amygdala central nucleus", - "CeA", - "central amygdala", - "central amygdalar nucleus", - "central nuclear group", - "central nucleus amygdala", - "central nucleus of amygda", - "central nucleus of amygdala", - "central nucleus of the amygdala", - "nucleus amygdalae centralis", - "nucleus amygdaloideus centralis", - "nucleus centralis amygdalae" - ] -} diff --git a/instances/UBERONParcellation/centralCervicalSpinocerebellarTract.jsonld b/instances/UBERONParcellation/centralCervicalSpinocerebellarTract.jsonld deleted file mode 100644 index 88fdd4a15..000000000 --- a/instances/UBERONParcellation/centralCervicalSpinocerebellarTract.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralCervicalSpinocerebellarTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central cervical spinocerebellar tract' is an axon tract. It is part of the spinocerebellar tract.", - "description": "Afferents from the neck and head to the cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101890", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023983#central-cervical-spinocerebellar-tract-1", - "name": "central cervical spinocerebellar tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023983", - "synonym": [ - "central cervical spinocerebellar tract" - ] -} diff --git a/instances/UBERONParcellation/centralDorsalNucleusOfThalamus.jsonld b/instances/UBERONParcellation/centralDorsalNucleusOfThalamus.jsonld deleted file mode 100644 index 7bd0f423d..000000000 --- a/instances/UBERONParcellation/centralDorsalNucleusOfThalamus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralDorsalNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central dorsal nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the rostral intralaminar nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101891", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003034#central-dorsal-nucleus", - "name": "central dorsal nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003034", - "synonym": [ - "CD", - "central dorsal nucleus", - "central dorsal nucleus of thalamus", - "circular nucleus", - "nucleus centralis dorsalis thalami", - "nucleus centralis superior lateralis", - "nucleus centralis superior lateralis thalami", - "nucleus circularis" - ] -} diff --git a/instances/UBERONParcellation/centralGraySubstanceOfMedulla.jsonld b/instances/UBERONParcellation/centralGraySubstanceOfMedulla.jsonld deleted file mode 100644 index 6a418d958..000000000 --- a/instances/UBERONParcellation/centralGraySubstanceOfMedulla.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralGraySubstanceOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central gray substance of medulla' is a gray matter of hindbrain and central gray substance. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101892", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002867#central-gray-substance-of-medulla-1", - "name": "central gray substance of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002867", - "synonym": [ - "central gray matter", - "central gray of the medulla", - "central gray substance of the medulla", - "CGM", - "griseum periventriculare", - "medullary central gray substance" - ] -} diff --git a/instances/UBERONParcellation/centralGraySubstanceOfMidbrain.jsonld b/instances/UBERONParcellation/centralGraySubstanceOfMidbrain.jsonld deleted file mode 100644 index 656faa119..000000000 --- a/instances/UBERONParcellation/centralGraySubstanceOfMidbrain.jsonld +++ /dev/null @@ -1,42 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralGraySubstanceOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central gray substance of midbrain' is a gray matter of midbrain and central gray substance. It is part of the midbrain tegmentum.", - "description": "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108717", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003040#central-gray-substance-of-midbrain-1", - "name": "central gray substance of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003040", - "synonym": [ - "anulus aquaeductus", - "anulus aqueductus cerebri", - "anulus of cerebral aqueduct", - "central (periaqueductal) gray", - "central gray", - "central gray of the midbrain", - "central gray substance of the midbrain", - "Central gray,Central grey substance of midbrain", - "central grey", - "central grey substance of midbrain", - "CGMB", - "griseum centrale", - "griseum centrale mesencephali", - "griseum periventriculare mesencephali", - "midbrain periaqueductal grey", - "pAG", - "periaquectuctal grey", - "periaqueductal gray", - "periaqueductal gray matter", - "periaqueductal gray of tegmentum", - "periaqueductal grey", - "periaqueductal grey matter", - "periaqueductal grey substance", - "proper", - "s. grisea centralis", - "substantia grisea centralis", - "substantia grisea centralis mesencephali" - ] -} diff --git a/instances/UBERONParcellation/centralGraySubstanceOfPons.jsonld b/instances/UBERONParcellation/centralGraySubstanceOfPons.jsonld deleted file mode 100644 index 4b8aacf62..000000000 --- a/instances/UBERONParcellation/centralGraySubstanceOfPons.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralGraySubstanceOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central gray substance of pons' is a gray matter of hindbrain and central gray substance. It is part of the pontine reticular formation.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101893", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002968#central-gray-substance-of-pons-1", - "name": "central gray substance of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002968", - "synonym": [ - "central gray of pons", - "central gray of the pons", - "CGPn", - "griseum centrale pontis", - "pontine central gray" - ] -} diff --git a/instances/UBERONParcellation/centralLateralNucleus.jsonld b/instances/UBERONParcellation/centralLateralNucleus.jsonld deleted file mode 100644 index 230a2e490..000000000 --- a/instances/UBERONParcellation/centralLateralNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central lateral nucleus' is a nucleus of dorsal thalamus. It is part of the rostral intralaminar nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101894", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003036#central-lateral-nucleus-1", - "name": "central lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003036", - "synonym": [ - "central lateral nucleus of thalamus", - "central lateral nucleus of the thalamus", - "central lateral thalamic nucleus", - "centrolateral thalamic nucleus", - "CL", - "nucleus centralis lateralis of thalamus", - "nucleus centralis lateralis thalami" - ] -} diff --git a/instances/UBERONParcellation/centralLobule.jsonld b/instances/UBERONParcellation/centralLobule.jsonld deleted file mode 100644 index cb3866979..000000000 --- a/instances/UBERONParcellation/centralLobule.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralLobule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central lobule' is a cerebellum vermis lobule. It is part of the cerebellum anterior vermis.", - "description": "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101897", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003021#central-lobule-1", - "name": "central lobule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003021", - "synonym": null -} diff --git a/instances/UBERONParcellation/centralMedialNucleus.jsonld b/instances/UBERONParcellation/centralMedialNucleus.jsonld deleted file mode 100644 index 19cf64132..000000000 --- a/instances/UBERONParcellation/centralMedialNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralMedialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central medial nucleus' is a nucleus of dorsal thalamus. It is part of the rostral intralaminar nuclear group.", - "description": "A small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101899", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001923#central-medial-nucleus-1", - "name": "central medial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001923", - "synonym": [ - "central medial nucleus of thalamus", - "central medial nucleus of the thalamus", - "central medial nucleus thalamus (Rioch 1928)", - "central medial thalamic nucleus", - "centromedial thalamic nucleus", - "CM", - "nucleus centralis medialis", - "nucleus centralis medialis thalami" - ] -} diff --git a/instances/UBERONParcellation/centralNucleusOfInferiorColliculus.jsonld b/instances/UBERONParcellation/centralNucleusOfInferiorColliculus.jsonld deleted file mode 100644 index 3d3adfbfd..000000000 --- a/instances/UBERONParcellation/centralNucleusOfInferiorColliculus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralNucleusOfInferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central nucleus of inferior colliculus' is a nucleus of midbrain tectum. It is part of the inferior colliculus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101911", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002563#central-nucleus-of-inferior-colliculus-1", - "name": "central nucleus of inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002563", - "synonym": [ - "central cortex of the inferior colliculus", - "central nucleus", - "central nucleus of the inferior colliculus", - "chief nucleus of inferior colliculus", - "CIC", - "inferior colliculus", - "inferior colliculus central nucleus", - "nucleus centralis (colliculi inferioris)", - "nucleus centralis colliculi inferioris", - "nucleus of inferior colliculus (Crosby)" - ] -} diff --git a/instances/UBERONParcellation/centralOculomotorNucleus.jsonld b/instances/UBERONParcellation/centralOculomotorNucleus.jsonld deleted file mode 100644 index b41c79a10..000000000 --- a/instances/UBERONParcellation/centralOculomotorNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101912", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002960#central-oculomotor-nucleus-1", - "name": "central oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002960", - "synonym": [ - "C3", - "Central nucleus of Perlia", - "Nucleus of Perlia", - "Spitzka's nucleus", - "nucleus nervi oculomotorii centralis", - "perlia nucleus of oculomotor nerve" - ] -} diff --git a/instances/UBERONParcellation/centralSulcus.jsonld b/instances/UBERONParcellation/centralSulcus.jsonld deleted file mode 100644 index 33f3f61d8..000000000 --- a/instances/UBERONParcellation/centralSulcus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'central sulcus' is a fold in the cerebral cortex of brains in vertebrates. [[WP,unvetted](http://en.wikipedia.org/wiki/Central_sulcus)]]", - "description": "The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [[WP,unvetted](http://en.wikipedia.org/wiki/Central_sulcus)]]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101916", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002916#central-sulcus-1", - "name": "central sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002916", - "synonym": [ - "central cerebral sulcus", - "central fissure", - "central sulcus of Rolando", - "CS", - "fissure of Rolando", - "rolandic fissure", - "sulcus centralis", - "sulcus centralis (rolandi)", - "sulcus centralis cerebri", - "sulcus of Rolando" - ] -} diff --git a/instances/UBERONParcellation/centralTegmentalTractOfMidbrain.jsonld b/instances/UBERONParcellation/centralTegmentalTractOfMidbrain.jsonld deleted file mode 100644 index 922759c90..000000000 --- a/instances/UBERONParcellation/centralTegmentalTractOfMidbrain.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralTegmentalTractOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central tegmental tract of midbrain' is a tract of brain. It is part of the midbrain tegmentum and central tegmental tract.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101918", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002585#central-tegmental-tract-of-midbrain-1", - "name": "central tegmental tract of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002585", - "synonym": [ - "central tegmental tract of the midbrain", - "ctgmb", - "tractus tegmentalis centralis (mesencephali)" - ] -} diff --git a/instances/UBERONParcellation/centralTegmentalTractOfPons.jsonld b/instances/UBERONParcellation/centralTegmentalTractOfPons.jsonld deleted file mode 100644 index 2700e3437..000000000 --- a/instances/UBERONParcellation/centralTegmentalTractOfPons.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centralTegmentalTractOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Central tegmental tract of pons' is a tract of brain. It is part of the pontine tegmentum and central tegmental tract.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101919", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002783#central-tegmental-tract-of-pons-1", - "name": "central tegmental tract of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002783", - "synonym": [ - "central tegmental tract of the pons", - "tractus tegmentalis centralis (pontis)" - ] -} diff --git a/instances/UBERONParcellation/centromedianNucleusOfThalamus.jsonld b/instances/UBERONParcellation/centromedianNucleusOfThalamus.jsonld deleted file mode 100644 index 86cd391b6..000000000 --- a/instances/UBERONParcellation/centromedianNucleusOfThalamus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/centromedianNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Centromedian nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the intralaminar nuclear group.", - "description": "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101921", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002972#centromedian-nucleus", - "name": "centromedian nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002972", - "synonym": [ - "central magnocellular nucleus of thalamus", - "central nucleus-1", - "centre median nucleus", - "centromedial thalamic nucleus", - "centromedian nucleus", - "centromedian nucleus of thalamus", - "centromedian thalamic nucleus", - "centrum medianum", - "centrum medianum thalami", - "CMn", - "Noyau centre median of Luys", - "nucleus centralis centralis", - "nucleus centralis thalami (Hassler)", - "nucleus centri mediani thalami", - "nucleus centromedianus", - "nucleus centromedianus thalami", - "nucleus centrum medianum" - ] -} diff --git a/instances/UBERONParcellation/cephalopodOpticLobe.jsonld b/instances/UBERONParcellation/cephalopodOpticLobe.jsonld deleted file mode 100644 index bfe10ddc8..000000000 --- a/instances/UBERONParcellation/cephalopodOpticLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cephalopodOpticLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cephalopod optic lobe' is a visual processing part of nervous system. It is part of the brain.", - "description": "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) .", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725883", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006796#cephalopod-optic-lobe", - "name": "cephalopod optic lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006796", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellarCortex.jsonld b/instances/UBERONParcellation/cerebellarCortex.jsonld deleted file mode 100644 index 4d0e6c516..000000000 --- a/instances/UBERONParcellation/cerebellarCortex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellarCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellar cortex' is a gray matter of hindbrain. It is part of the cerebellum.", - "description": "The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer, and the white matter laminae lying deep to the granule cell layer.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101946", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002129#cerebellar-cortex-1", - "name": "cerebellar cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002129", - "synonym": [ - "cortex cerebellaris", - "cortex cerebelli", - "cortex of cerebellar hemisphere", - "cortex of cerebellum" - ] -} diff --git a/instances/UBERONParcellation/cerebellarLayer.jsonld b/instances/UBERONParcellation/cerebellarLayer.jsonld deleted file mode 100644 index 4fb0c0ef0..000000000 --- a/instances/UBERONParcellation/cerebellarLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellarLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellar layer' is a central nervous system cell part cluster and central nervous system gray matter layer. It is part of the cerebellar cortex.", - "description": "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732371", - "knowledgeSpaceLink": null, - "name": "cerebellar layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004130", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellarNuclearComplex.jsonld b/instances/UBERONParcellation/cerebellarNuclearComplex.jsonld deleted file mode 100644 index 599558e9a..000000000 --- a/instances/UBERONParcellation/cerebellarNuclearComplex.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellarNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellar nuclear complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the cerebellum.", - "description": "The gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from these nuclei[MP]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102971", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002130#deep-cerebellar-nuclear-complex", - "name": "cerebellar nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002130", - "synonym": [ - "central nuclei", - "cerebellar nuclei", - "deep cerebellar nuclear complex", - "deep cerebellar nuclei", - "intracerebellar nuclei", - "intrinsic nuclei of cerebellum", - "nuclei cerebellares", - "nuclei cerebellaris", - "nuclei cerebelli", - "roof nuclei-2", - "set of cerebellar nuclei" - ] -} diff --git a/instances/UBERONParcellation/cerebellarPlate.jsonld b/instances/UBERONParcellation/cerebellarPlate.jsonld deleted file mode 100644 index 060803adb..000000000 --- a/instances/UBERONParcellation/cerebellarPlate.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellarPlate", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellar plate' is part of the cerebellum.", - "description": "The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729245", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004008#cerebellar-plate", - "name": "cerebellar plate", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004008", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellarVermis.jsonld b/instances/UBERONParcellation/cerebellarVermis.jsonld deleted file mode 100644 index 1d757c98c..000000000 --- a/instances/UBERONParcellation/cerebellarVermis.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellarVermis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A subregion of the cerebellar cortex, consisting of the most medial zone of the cerebellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally).", - "description": "'Cerebellar vermis' is a regional part of cerebellar cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112392", - "knowledgeSpaceLink": null, - "name": "cerebellar vermis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004720", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellum.jsonld b/instances/UBERONParcellation/cerebellum.jsonld deleted file mode 100644 index 2c38775b5..000000000 --- a/instances/UBERONParcellation/cerebellum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum' is a regional part of brain. It is part of the metencephalon.", - "description": "Part of the rhombencephalon that lies in the posterior cranial fossa behind the brain stem, consisting of the cerebellar cortex, deep cerebellar nuclei and cerebellar white matter.A portion of the brain that helps regulate posture, balance, and coordination. (NIDA Media Guide Glossary)The dorsal topographic division of the hindbrain, connected to the ventral division-the pons-by a white matter tract, the middle cerebellar peduncle. The cerebellum was discovered and named by Aristotle (De Partibus Animalium) based on macrodissection of a variety of animals not including humans; see translation by Thompson (1910, 494b 30). Older synonyms include parencephalon (Aristotle), hindbrain (Galen, c192).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101963", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002037#cerebellum-1", - "name": "cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002037", - "synonym": [ - "corpus cerebelli", - "epencephalon-1", - "infratentorial region", - "Parencephalon" - ] -} diff --git a/instances/UBERONParcellation/cerebellumFissure.jsonld b/instances/UBERONParcellation/cerebellumFissure.jsonld deleted file mode 100644 index af56058b8..000000000 --- a/instances/UBERONParcellation/cerebellumFissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumFissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum fissure' is a subarachnoid fissure. It is part of the cerebellum.", - "description": "One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728095", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003980#cerebellum-fissure", - "name": "cerebellum fissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003980", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumGloboseNucleus.jsonld b/instances/UBERONParcellation/cerebellumGloboseNucleus.jsonld deleted file mode 100644 index 28caf6724..000000000 --- a/instances/UBERONParcellation/cerebellumGloboseNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumGloboseNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum globose nucleus' is a cerebellum interpositus nucleus.", - "description": "One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei. It is recognized in human cerebellum but is not distinguishable in all mammalian species.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104655", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002613#globose-nucleus", - "name": "cerebellum globose nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002613", - "synonym": [ - "Glo", - "globose nucleus", - "medial interposed nucleus", - "medial interpositus (globose) nucleus", - "medial interpositus nucleus", - "nuclei globosi", - "nucleus globosus", - "nucleus globosus cerebelli", - "nucleus interpositus posterior", - "nucleus interpositus posterior cerebelli", - "posterior interposed nucleus", - "posterior interpositus nucleus" - ] -} diff --git a/instances/UBERONParcellation/cerebellumHemisphericLobuleX.jsonld b/instances/UBERONParcellation/cerebellumHemisphericLobuleX.jsonld deleted file mode 100644 index eaf8aa44a..000000000 --- a/instances/UBERONParcellation/cerebellumHemisphericLobuleX.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumHemisphericLobuleX", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Cerebellum hemispheric lobule X' is a cerebellum hemisphere lobule and flocculonodular lobe, hemisphere portion.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104945", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024009#cerebellum-hemispheric-lobule-x", - "name": "cerebellum hemispheric lobule X", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024009", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumIntermediateZone.jsonld b/instances/UBERONParcellation/cerebellumIntermediateZone.jsonld deleted file mode 100644 index 51ac70f02..000000000 --- a/instances/UBERONParcellation/cerebellumIntermediateZone.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumIntermediateZone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum intermediate zone' is a regional part of cerebellar cortex. It is part of the cerebellar hemisphere and spinocerebellum.", - "description": "A region on either side of the midline of the cerebellum that lies lateral to the vermis and medial to the hemisphere. It contains the cerebellar cortical zones C1, C2 and C3 and receives climbing fibre input from the inferior olive and projects to the nucleus interpositus. Here, the term is used to denote the functionally related C1, C3 and Y (but not the C2) zones (Nature glossary: http://www.nature.com/nrn/journal/v6/n4/glossary/nrn1646.html#df1).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101956", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004006#cerebellar-paravermis", - "name": "cerebellum intermediate zone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004006", - "synonym": [ - "cerebellar paravermis", - "cerebellum intermediate hemisphere", - "intermediate part of spinocerebellum", - "intermediate zone", - "paleocerebellum", - "paravermal zone of the cerebellum", - "paravermis", - "spinocerebellum" - ] -} diff --git a/instances/UBERONParcellation/cerebellumInterpositusNucleus.jsonld b/instances/UBERONParcellation/cerebellumInterpositusNucleus.jsonld deleted file mode 100644 index e9dfd2a79..000000000 --- a/instances/UBERONParcellation/cerebellumInterpositusNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumInterpositusNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum interpositus nucleus' is a nucleus of cerebellar nuclear complex.", - "description": "The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105602", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004073#interpositus-nucleus", - "name": "cerebellum interpositus nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004073", - "synonym": [ - "Int", - "interposed cerebellar nuclei", - "interposed nucleus", - "interposed nucleus of cerebellum", - "interposed nucleus of the cerebellum", - "interpositus", - "interpositus nucleus" - ] -} diff --git a/instances/UBERONParcellation/cerebellumMarginalLayer.jsonld b/instances/UBERONParcellation/cerebellumMarginalLayer.jsonld deleted file mode 100644 index b5e04b904..000000000 --- a/instances/UBERONParcellation/cerebellumMarginalLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumMarginalLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum marginal layer' is a hindbrain marginal layer. It is part of the cerebellum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734731", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034708#cerebellum-marginal-layer", - "name": "cerebellum marginal layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034708", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVasculature.jsonld b/instances/UBERONParcellation/cerebellumVasculature.jsonld deleted file mode 100644 index 59eec6e77..000000000 --- a/instances/UBERONParcellation/cerebellumVasculature.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVasculature", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vasculature' is a vasculature of central nervous system. It is part of the cerebellum.", - "description": "A vasculature that is part of a cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729550", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006694#cerebellum-vasculature", - "name": "cerebellum vasculature", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006694", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVermisCulmen.jsonld b/instances/UBERONParcellation/cerebellumVermisCulmen.jsonld deleted file mode 100644 index 94560d364..000000000 --- a/instances/UBERONParcellation/cerebellumVermisCulmen.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVermisCulmen", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vermis culmen' is a cerebellum vermis lobule. It is part of the cerebellum anterior vermis.", - "description": "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102659", - "knowledgeSpaceLink": null, - "name": "cerebellum vermis culmen", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007763", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVermisLobule.jsonld b/instances/UBERONParcellation/cerebellumVermisLobule.jsonld deleted file mode 100644 index cdc85a3dc..000000000 --- a/instances/UBERONParcellation/cerebellumVermisLobule.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVermisLobule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vermis lobule' is a cerebellum lobule. It is part of the cerebellar vermis.", - "description": "The region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109877", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004070#cerebellum-vermis-lobule", - "name": "cerebellum vermis lobule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004070", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVermisLobuleI.jsonld b/instances/UBERONParcellation/cerebellumVermisLobuleI.jsonld deleted file mode 100644 index 93b09a50c..000000000 --- a/instances/UBERONParcellation/cerebellumVermisLobuleI.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVermisLobuleI", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vermis lobule I' is a cerebellum vermis lobule. It is part of the cerebellum anterior vermis.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112394", - "knowledgeSpaceLink": null, - "name": "cerebellum vermis lobule I", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004074", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVermisLobuleIX.jsonld b/instances/UBERONParcellation/cerebellumVermisLobuleIX.jsonld deleted file mode 100644 index 5400ad716..000000000 --- a/instances/UBERONParcellation/cerebellumVermisLobuleIX.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVermisLobuleIX", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vermis lobule IX' is a cerebellum vermis lobule. It is part of the flocculonodular lobe.", - "description": "The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112398", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004078#cerebellum-vermis-lobule-ix", - "name": "cerebellum vermis lobule IX", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004078", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebellumVermisLobuleX.jsonld b/instances/UBERONParcellation/cerebellumVermisLobuleX.jsonld deleted file mode 100644 index adab25ec4..000000000 --- a/instances/UBERONParcellation/cerebellumVermisLobuleX.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebellumVermisLobuleX", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebellum vermis lobule X' is a cerebellum vermis lobule. It is part of the flocculonodular lobe.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112405", - "knowledgeSpaceLink": null, - "name": "cerebellum vermis lobule X", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004083", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebralBloodVessel.jsonld b/instances/UBERONParcellation/cerebralBloodVessel.jsonld deleted file mode 100644 index a09f5c038..000000000 --- a/instances/UBERONParcellation/cerebralBloodVessel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralBloodVessel", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral blood vessel' is a brain blood vessel. It is part of the cerebellum.", - "description": "A blood vessel that is part of a cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732836", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016565#cerebral-blood-vessel", - "name": "cerebral blood vessel", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016565", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebralCortex.jsonld b/instances/UBERONParcellation/cerebralCortex.jsonld deleted file mode 100644 index 5ef2ae075..000000000 --- a/instances/UBERONParcellation/cerebralCortex.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral cortex' is a central nervous system cell part cluster and central nervous system gray matter layer. It is part of the pallium and cerebral hemisphere gray matter.", - "description": "The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex.The '''cerebral cortex''' is a sheet of neural tissue that is outermost to the cerebrum of the mammalian brain. It plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It is constituted of up to six horizontal layers, each of which has a different composition in terms of neurons and connectivity.One of the 10 basic divisions of the cerebrospinal axi. The cerebral cortex is the dorsal topographic division of the endbrain (Kuhlenbeck, 1927), with a basically radial, laminated architecture. The cerebral cortex was described and illustrated for macrodissected adult humans by Vesalius (1543), and the term itself was introduced for macrodissected adult humans by Bauhin (1605).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101978", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000956#cerebral-cortex-1", - "name": "cerebral cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000956", - "synonym": [ - "brain cortex", - "cortex", - "cortex cerebralis", - "cortex cerebri", - "cortex of cerebral hemisphere", - "cortex of cerebrum", - "cortical plate (areas)", - "cortical plate (CTXpl)", - "Cx", - "pallium of the brain" - ] -} diff --git a/instances/UBERONParcellation/cerebralCortexMarginalLayer.jsonld b/instances/UBERONParcellation/cerebralCortexMarginalLayer.jsonld deleted file mode 100644 index d6c7a92f0..000000000 --- a/instances/UBERONParcellation/cerebralCortexMarginalLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralCortexMarginalLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral cortex marginal layer' is a layer of developing cerebral cortex. It is part of the brain marginal zone.", - "description": "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726687", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014935#cerebral-cortex-marginal-layer", - "name": "cerebral cortex marginal layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014935", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebralCrus.jsonld b/instances/UBERONParcellation/cerebralCrus.jsonld deleted file mode 100644 index 44590e83d..000000000 --- a/instances/UBERONParcellation/cerebralCrus.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralCrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral crus' is a white matter of midbrain. It is part of the cerebral peduncle.", - "description": "The cerebral crus is the most anterior portion of the midbrain which consists of a massive band of nerve fibers originating primarily from the cerebral cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101990", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002631#cerebral-crus-1", - "name": "cerebral crus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002631", - "synonym": [ - "basal part", - "base of cerebral peduncle", - "basis cerebri (Oertel)", - "basis pedunculi (Oertel)", - "basis pedunculi cerebri (Willis)", - "ccr", - "cerebral peduncle", - "cerebral peduncle (clinical definition)", - "crura cerebri", - "crus cerebri", - "crus of the cerebral peduncle", - "pars basalis", - "pars neo-encephalica pedunculi", - "pedunculus cerebri", - "pes pedunculi", - "pes pedunculi of midbrain" - ] -} diff --git a/instances/UBERONParcellation/cerebralHemisphere.jsonld b/instances/UBERONParcellation/cerebralHemisphere.jsonld deleted file mode 100644 index d32655bcd..000000000 --- a/instances/UBERONParcellation/cerebralHemisphere.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralHemisphere", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral hemisphere' is part of the telencephalon.", - "description": "Gross division of the brain. The term cerebrum has several definitions ranging in generality from equivalence to the term \"brain\" to the sum of the left cerebral hemisphere and right hemisphere, to a composite structure consisting of the cerebral cortex and adjacent cerebral white matter. A thorough discussion of the nature and history of the different definitions is presented in Anthoney-94 (NeuroNames).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102003", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001869#cerebrum", - "name": "cerebral hemisphere", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001869", - "synonym": [ - "cerebrum", - "hemisphere", - "hemispheric regions", - "hemispherium cerebri", - "medial amygdalar nucleus", - "nucleus amygdaloideus medialis", - "nucleus medialis amygdalae" - ] -} diff --git a/instances/UBERONParcellation/cerebralHemisphereWhiteMatter.jsonld b/instances/UBERONParcellation/cerebralHemisphereWhiteMatter.jsonld deleted file mode 100644 index 4852b4a5a..000000000 --- a/instances/UBERONParcellation/cerebralHemisphereWhiteMatter.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralHemisphereWhiteMatter", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral hemisphere white matter' is a white matter of telencephalon. It is part of the cerebral hemisphere.", - "description": "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101998", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002437#cerebral-white-matter", - "name": "cerebral hemisphere white matter", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002437", - "synonym": [ - "cerebral hemisphere white matter", - "cerebral white matter", - "hemisphere white matter", - "region of cerebral white matter", - "substantia medullaris cerebri", - "white matter structure of cerebral hemisphere" - ] -} diff --git a/instances/UBERONParcellation/cerebralPeduncle.jsonld b/instances/UBERONParcellation/cerebralPeduncle.jsonld deleted file mode 100644 index ad232f1dd..000000000 --- a/instances/UBERONParcellation/cerebralPeduncle.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral peduncle' is a peduncle of neuraxis and white matter of midbrain.", - "description": "Synonym for macrodissected adult human tegmentum (Vicq d'Azyr, 1784; Swanson, 2000); pp. 555-556. Later used thus by for example His (1893b, p. 178), Herrick (1915, p. 160), Strong & Elwyn (1943, p. 17), Carpenter (1976, p. 367), Williams & Warwick (1980, p. 935).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101996", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002623#cerebral-peduncle-1", - "name": "cerebral peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002623", - "synonym": [ - "cerebal peduncle", - "cerebral peduncle", - "cerebral peduncle (archaic)", - "CP", - "peduncle of midbrain", - "pedunculi cerebri", - "pedunculus cerebralis", - "pedunculus cerebri", - "tegmentum" - ] -} diff --git a/instances/UBERONParcellation/cerebralSubcortex.jsonld b/instances/UBERONParcellation/cerebralSubcortex.jsonld deleted file mode 100644 index ffe5119e9..000000000 --- a/instances/UBERONParcellation/cerebralSubcortex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebralSubcortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cerebral subcortex' is part of the brain.", - "description": "The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729745", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000454#cerebral-subcortex", - "name": "cerebral subcortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000454", - "synonym": null -} diff --git a/instances/UBERONParcellation/cerebrospinalFluid.jsonld b/instances/UBERONParcellation/cerebrospinalFluid.jsonld deleted file mode 100644 index a8ffe2804..000000000 --- a/instances/UBERONParcellation/cerebrospinalFluid.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cerebrospinalFluid", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'cerebrospinal fluid' is a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord [WP, modified]. [http://en.wikipedia.org/wiki/Cerebrospinal_fluid]", - "description": "The fluid that is contained within the brain ventricles, the subarachnoid space and the central canal of the spinal cord (NCI). Transudate contained in the subarachnoid space (UWDA). Clear colorless liquid secreted by the choroid plexus of the lateral, third, and fourth ventricles, and contained within the ventricular system of the brain and spinal cord and within the subarachnoid space (CSP).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101997", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/#cerebral-spinal-fluid", - "name": "cerebrospinal fluid", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001359", - "synonym": [ - "CSF", - "cerebral spinal fluid", - "liquor cerebrospinalis", - "spinal fluid" - ] -} diff --git a/instances/UBERONParcellation/chemoarchitecturalPartOfBrain.jsonld b/instances/UBERONParcellation/chemoarchitecturalPartOfBrain.jsonld deleted file mode 100644 index 2aee52cbd..000000000 --- a/instances/UBERONParcellation/chemoarchitecturalPartOfBrain.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/chemoarchitecturalPartOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Chemoarchitectural part of brain' is a regional part of brain.", - "description": "Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102072", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024090#chemoarchitectural-part", - "name": "chemoarchitectural part of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024090", - "synonym": [ - "chemoarchitectural part" - ] -} diff --git a/instances/UBERONParcellation/chemoarchitecturalPartOfStriatum.jsonld b/instances/UBERONParcellation/chemoarchitecturalPartOfStriatum.jsonld deleted file mode 100644 index dd00062ea..000000000 --- a/instances/UBERONParcellation/chemoarchitecturalPartOfStriatum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/chemoarchitecturalPartOfStriatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Chemoarchitectural part of striatum' is a chemoarchitectural part of brain. It is part of the striatum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102073", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0025736#chemoarchitectural-part-of-striatum", - "name": "chemoarchitectural part of striatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025736", - "synonym": null -} diff --git a/instances/UBERONParcellation/choroidPlexus.jsonld b/instances/UBERONParcellation/choroidPlexus.jsonld deleted file mode 100644 index db6bb6149..000000000 --- a/instances/UBERONParcellation/choroidPlexus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus' is a brain ventricle/choroid plexus and vasculature of central nervous system. It is part of the brain ventricle and tela choroidea.", - "description": "A structure consisting of modified ependymal cells in the ventricles of the brain responsible for the production of cerebral spinal fluid (CSFF).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102142", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001886#choroid-plexus-1", - "name": "choroid plexus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001886", - "synonym": [ - "chorioid plexus", - "choroid plexus", - "choroid plexus of cerebral hemisphere", - "CP", - "plexus choroideus", - "ventricular choroid plexus" - ] -} diff --git a/instances/UBERONParcellation/choroidPlexusCorporaArenacea.jsonld b/instances/UBERONParcellation/choroidPlexusCorporaArenacea.jsonld deleted file mode 100644 index 66c7bcaec..000000000 --- a/instances/UBERONParcellation/choroidPlexusCorporaArenacea.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusCorporaArenacea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus corpora arenacea' is a calcified structure of brain. It is part of the choroid plexus.", - "description": "A calcified structure of brain that is part of a choroid plexus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728330", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0017633#choroid-plexus-corpora-arenacea", - "name": "choroid plexus corpora arenacea", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0017633", - "synonym": null -} diff --git a/instances/UBERONParcellation/choroidPlexusEpithelium.jsonld b/instances/UBERONParcellation/choroidPlexusEpithelium.jsonld deleted file mode 100644 index df544e335..000000000 --- a/instances/UBERONParcellation/choroidPlexusEpithelium.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusEpithelium", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus epithelium' is part of the choroid plexus.", - "description": "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726675", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003911#choroid-plexus-epithelium", - "name": "choroid plexus epithelium", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003911", - "synonym": null -} diff --git a/instances/UBERONParcellation/choroidPlexusOfFourthVentricle.jsonld b/instances/UBERONParcellation/choroidPlexusOfFourthVentricle.jsonld deleted file mode 100644 index 0b35967b1..000000000 --- a/instances/UBERONParcellation/choroidPlexusOfFourthVentricle.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusOfFourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus of fourth ventricle' is a choroid plexus and cerebellum vasculature. It is part of the fourth ventricle.", - "description": "Choroid plexus of the fourth ventricle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102143", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002290#choroid-plexus-of-fourth-ventricle", - "name": "choroid plexus of fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002290", - "synonym": [ - "4th ventricle choroid plexus", - "chorioid plexus of cerebral hemisphere of fourth ventricle", - "chorioid plexus of fourth ventricle", - "choroid plexus fourth ventricle", - "fourth ventricle chorioid plexus of cerebral hemisphere", - "fourth ventricle choroid plexus" - ] -} diff --git a/instances/UBERONParcellation/choroidPlexusOfLateralVentricle.jsonld b/instances/UBERONParcellation/choroidPlexusOfLateralVentricle.jsonld deleted file mode 100644 index 254ce372f..000000000 --- a/instances/UBERONParcellation/choroidPlexusOfLateralVentricle.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusOfLateralVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus of lateral ventricle' is a choroid plexus. It is part of the telencephalic ventricle.", - "description": "Part of choroid plexus contained in the lateral ventricle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102144", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002307#choroid-plexus-of-lateral-ventricle", - "name": "choroid plexus of lateral ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002307", - "synonym": [ - "chorioid plexus of cerebral hemisphere of lateral ventricle", - "chorioid plexus of lateral ventricle", - "choroid plexus telencephalic ventricle", - "lateral ventricle chorioid plexus of cerebral hemisphere", - "lateral ventricle choroid plexus" - ] -} diff --git a/instances/UBERONParcellation/choroidPlexusOfThirdVentricle.jsonld b/instances/UBERONParcellation/choroidPlexusOfThirdVentricle.jsonld deleted file mode 100644 index 1d9fd3582..000000000 --- a/instances/UBERONParcellation/choroidPlexusOfThirdVentricle.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusOfThirdVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus of third ventricle' is a choroid plexus. It is part of the third ventricle.", - "description": "Part of choroid plexus contained in the third ventricle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102145", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002288#choroid-plexus-of-third-ventricle", - "name": "choroid plexus of third ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002288", - "synonym": [ - "3rd ventricle choroid plexus", - "chorioid plexus of cerebral hemisphere of third ventricle", - "chorioid plexus of third ventricle", - "choroid plexus third ventricle", - "diencephalic choroid plexus", - "third ventricle chorioid plexus of cerebral hemisphere", - "third ventricle choroid plexus" - ] -} diff --git a/instances/UBERONParcellation/choroidPlexusStroma.jsonld b/instances/UBERONParcellation/choroidPlexusStroma.jsonld deleted file mode 100644 index 40809bd51..000000000 --- a/instances/UBERONParcellation/choroidPlexusStroma.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/choroidPlexusStroma", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Choroid plexus stroma' is part of the choroid plexus.", - "description": "Stromal matrix surrounding blood vessels within the choroid plexus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726217", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005206#choroid-plexus-stroma", - "name": "choroid plexus stroma", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005206", - "synonym": null -} diff --git a/instances/UBERONParcellation/cingulateCortex.jsonld b/instances/UBERONParcellation/cingulateCortex.jsonld deleted file mode 100644 index 0fdd32df8..000000000 --- a/instances/UBERONParcellation/cingulateCortex.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cingulateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cingulate cortex' is a regional part of brain. It is part of the limbic cortex.", - "description": "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102179", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003027#cingulate-cortex-1", - "name": "cingulate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003027", - "synonym": [ - "cingulate neocortex", - "gyrus cingulatus", - "gyrus cinguli" - ] -} diff --git a/instances/UBERONParcellation/cingulateGyrus.jsonld b/instances/UBERONParcellation/cingulateGyrus.jsonld deleted file mode 100644 index 17ada7eb7..000000000 --- a/instances/UBERONParcellation/cingulateGyrus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cingulateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cingulate gyrus' is a gyrus. It is part of the limbic system.", - "description": "One of the convolutions on the medial surface of the cerebral hemisphere. It surrounds the rostral part of the brain and interhemispheric commissure and forms part of the limbic system. (MSH) One of three essential structures comprising the limbic lobe, the other two being the hippocampus and parahippocampal gyrus. (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102180", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002967#cingulate-gyrus-1", - "name": "cingulate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002967", - "synonym": [ - "CG", - "cingular gyrus", - "cingulate area", - "cingulate region", - "falciform lobe", - "gyri cinguli", - "upper limbic gyrus" - ] -} diff --git a/instances/UBERONParcellation/cingulateSulcus.jsonld b/instances/UBERONParcellation/cingulateSulcus.jsonld deleted file mode 100644 index 106121a7b..000000000 --- a/instances/UBERONParcellation/cingulateSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cingulateSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted].", - "description": "'Cingulate sulcus' is a subarachnoid sulcus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102181", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002710#cingulate-sulcus-1", - "name": "cingulate sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002710", - "synonym": null -} diff --git a/instances/UBERONParcellation/cingulumOfBrain.jsonld b/instances/UBERONParcellation/cingulumOfBrain.jsonld deleted file mode 100644 index 1dac155dc..000000000 --- a/instances/UBERONParcellation/cingulumOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cingulumOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cingulum of brain' is a tract of brain. It is part of the brain white matter.", - "description": "The white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736017", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003961#cingulum-of-brain", - "name": "cingulum of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003961", - "synonym": null -} diff --git a/instances/UBERONParcellation/circularSulcusOfInsula.jsonld b/instances/UBERONParcellation/circularSulcusOfInsula.jsonld deleted file mode 100644 index 823edbb09..000000000 --- a/instances/UBERONParcellation/circularSulcusOfInsula.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/circularSulcusOfInsula", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Circular sulcus of insula' is a marginal sulcus. It is part of the insula.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102193", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002713#circular-sulcus-of-insula-1", - "name": "circular sulcus of insula", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002713", - "synonym": null -} diff --git a/instances/UBERONParcellation/circumventricularOrgan.jsonld b/instances/UBERONParcellation/circumventricularOrgan.jsonld deleted file mode 100644 index ee0714d4f..000000000 --- a/instances/UBERONParcellation/circumventricularOrgan.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/circumventricularOrgan", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Circumventricular organ' is a regional part of brain.", - "description": "Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102196", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005408#circumventricular-organ-1", - "name": "circumventricular organ", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005408", - "synonym": [ - "CVO", - "circumventricular organ", - "circumventricular organ of neuraxis" - ] -} diff --git a/instances/UBERONParcellation/claustralAmygdaloidArea.jsonld b/instances/UBERONParcellation/claustralAmygdaloidArea.jsonld deleted file mode 100644 index af1ae91e2..000000000 --- a/instances/UBERONParcellation/claustralAmygdaloidArea.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/claustralAmygdaloidArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Claustral amygdaloid area' is a cerebral hemisphere gray matter. It is part of the amygdala and basal nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102229", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002729#claustral-amygdaloid-area-1", - "name": "claustral amygdaloid area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002729", - "synonym": [ - "area claustralis amygdalae", - "claustral amygdalar area", - "claustrum diffusa", - "claustrum parvum", - "ventral claustrum", - "ventral portion of claustrum" - ] -} diff --git a/instances/UBERONParcellation/claustrumOfBrain.jsonld b/instances/UBERONParcellation/claustrumOfBrain.jsonld deleted file mode 100644 index c3fbc54dd..000000000 --- a/instances/UBERONParcellation/claustrumOfBrain.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/claustrumOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Claustrum of brain' is a basal ganglion and cerebral hemisphere gray matter. It is part of the pallium and basal nuclear complex.", - "description": "Lamina of gray matter in the forebrain separated from the cortex in most species by the extreme capsule. (Brodal, Neurological Anatomy, 3rd Ed., 1981, pg 225).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102230", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002023#claustrum", - "name": "claustrum of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002023", - "synonym": [ - "Cl", - "claustrum", - "claustrum (Burdach)", - "dorsal claustrum", - "dorsal portion of claustrum", - "insular claustrum" - ] -} diff --git a/instances/UBERONParcellation/cochlearNuclearComplex.jsonld b/instances/UBERONParcellation/cochlearNuclearComplex.jsonld deleted file mode 100644 index 3b2b28b41..000000000 --- a/instances/UBERONParcellation/cochlearNuclearComplex.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cochlearNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cochlear nuclear complex' is a gray matter of hindbrain. It is part of the medulla oblongata.", - "description": "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102309", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002610#cochlear-nuclear-complex-1", - "name": "cochlear nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002610", - "synonym": [ - "cochlear nuclei", - "cochlear nucleus", - "nuclei cochleares" - ] -} diff --git a/instances/UBERONParcellation/collateralSulcus.jsonld b/instances/UBERONParcellation/collateralSulcus.jsonld deleted file mode 100644 index 8a091010b..000000000 --- a/instances/UBERONParcellation/collateralSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/collateralSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted].", - "description": "'Collateral sulcus' is a subarachnoid sulcus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102361", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002716#collateral-sulcus-1", - "name": "collateral sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002716", - "synonym": null -} diff --git a/instances/UBERONParcellation/collectionOfBasalGanglia.jsonld b/instances/UBERONParcellation/collectionOfBasalGanglia.jsonld deleted file mode 100644 index d4a3a1813..000000000 --- a/instances/UBERONParcellation/collectionOfBasalGanglia.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/collectionOfBasalGanglia", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Collection of basal ganglia' is an aggregate regional part of brain. It is part of the cerebral subcortex.", - "description": "Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101102", - "knowledgeSpaceLink": null, - "name": "collection of basal ganglia", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010011", - "synonym": null -} diff --git a/instances/UBERONParcellation/commissuralNucleusOfTheSolitaryTract.jsonld b/instances/UBERONParcellation/commissuralNucleusOfTheSolitaryTract.jsonld deleted file mode 100644 index 1329d06e9..000000000 --- a/instances/UBERONParcellation/commissuralNucleusOfTheSolitaryTract.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/commissuralNucleusOfTheSolitaryTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Commissural nucleus of the solitary tract' is a nucleus of solitary tract.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102404", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023855#commissural-nucleus-of-the-solitary-tract-1", - "name": "commissural nucleus of the solitary tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023855", - "synonym": [ - "commissural nucleus of the solitary tract", - "commissural nucleus tractus solitarius" - ] -} diff --git a/instances/UBERONParcellation/commissuralNucleusOfVagusNerve.jsonld b/instances/UBERONParcellation/commissuralNucleusOfVagusNerve.jsonld deleted file mode 100644 index 882aacf52..000000000 --- a/instances/UBERONParcellation/commissuralNucleusOfVagusNerve.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/commissuralNucleusOfVagusNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Commissural nucleus of vagus nerve' is a nucleus of medulla oblongata and vagus nerve nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102405", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002868#commissural-nucleus-of-vagus-nerve-1", - "name": "commissural nucleus of vagus nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002868", - "synonym": [ - "Cm10", - "commissural nucleus of the vagus nerve", - "commissural nucleus-1", - "nucleus commissuralis", - "nucleus commissuralis nervi vagi", - "nucleus of inferior commissure", - "nucleus of inferior commisure" - ] -} diff --git a/instances/UBERONParcellation/compositePartSpanningMultipleBaseRegionalPartsOfBrain.jsonld b/instances/UBERONParcellation/compositePartSpanningMultipleBaseRegionalPartsOfBrain.jsonld deleted file mode 100644 index 3f76d8889..000000000 --- a/instances/UBERONParcellation/compositePartSpanningMultipleBaseRegionalPartsOfBrain.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/compositePartSpanningMultipleBaseRegionalPartsOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Composite part spanning multiple base regional parts of brain' is an anatomical entity. It is part of the brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102438", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022776#composite-part-spanning-multiple-base-regional-parts-of-brain-1", - "name": "composite part spanning multiple base regional parts of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022776", - "synonym": [ - "composite part spanning multiple base regional parts of brain" - ] -} diff --git a/instances/UBERONParcellation/copulaPyramidis.jsonld b/instances/UBERONParcellation/copulaPyramidis.jsonld deleted file mode 100644 index 57c861bc3..000000000 --- a/instances/UBERONParcellation/copulaPyramidis.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/copulaPyramidis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Copula pyramidis' is a cerebellum hemisphere lobule.", - "description": "A part of the cerebellar hemisphere in the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) that corresponds laterally to the pyramis of the vermis of the cerebellum. It is regarded as the rodent homolog of the 'lateral belly' of the the biventer lobule of the human (Voogd-1990) (Adapted from NeuroNames: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102555", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005347#copula-pyramidis", - "name": "copula pyramidis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005347", - "synonym": [ - "copula of the pyramis" - ] -} diff --git a/instances/UBERONParcellation/coreOfNucleusAccumbens.jsonld b/instances/UBERONParcellation/coreOfNucleusAccumbens.jsonld deleted file mode 100644 index 6e91cc70f..000000000 --- a/instances/UBERONParcellation/coreOfNucleusAccumbens.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/coreOfNucleusAccumbens", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Core of nucleus accumbens' is a regional part of brain. It is part of the nucleus accumbens.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102559", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0012170#core-of-nucleus-accumbens-1", - "name": "core of nucleus accumbens", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0012170", - "synonym": [ - "AcbC", - "accumbens nucleus", - "accumbens nucleus core", - "core", - "core of nucleus accumbens", - "core region of nucleus accumbens", - "nucleus accumbens core", - "nucleusa ccumbens core" - ] -} diff --git a/instances/UBERONParcellation/coronaRadiataOfNeuraxis.jsonld b/instances/UBERONParcellation/coronaRadiataOfNeuraxis.jsonld deleted file mode 100644 index dd5997245..000000000 --- a/instances/UBERONParcellation/coronaRadiataOfNeuraxis.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/coronaRadiataOfNeuraxis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Corona radiata of neuraxis' is a cerebral hemisphere white matter.", - "description": "Fan shaped white matter mass comprised of afferent and efferent fibers from the cerebral cortex arranged in radially arrayed bundles, converging towards the internal capsule (Carpenter, Core Text of Neuroanatomy, 3rd ed, 1985, pg. 30; Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 84).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102560", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004682#corona-radiata", - "name": "corona radiata of neuraxis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004682", - "synonym": [ - "corona radiata" - ] -} diff --git a/instances/UBERONParcellation/corpusCallosum.jsonld b/instances/UBERONParcellation/corpusCallosum.jsonld deleted file mode 100644 index 5140fc4d1..000000000 --- a/instances/UBERONParcellation/corpusCallosum.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corpusCallosum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'corpus callosum' is a white matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102562", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002336#corpus-callosum", - "name": "corpus callosum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002336", - "synonym": [ - "cc" - ] -} diff --git a/instances/UBERONParcellation/corpusStriatum.jsonld b/instances/UBERONParcellation/corpusStriatum.jsonld deleted file mode 100644 index f859d09ab..000000000 --- a/instances/UBERONParcellation/corpusStriatum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corpusStriatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Corpus striatum' is a regional part of brain. It is part of the basal ganglion.", - "description": "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729722", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000369#corpus-striatum", - "name": "corpus striatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000369", - "synonym": null -} diff --git a/instances/UBERONParcellation/corticalAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/corticalAmygdaloidNucleus.jsonld deleted file mode 100644 index e2f873314..000000000 --- a/instances/UBERONParcellation/corticalAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cortical amygdaloid nucleus' is a telencephalic nucleus. It is part of the corticomedial nuclear complex.", - "description": "Three layered structure that is located in the caudal aspect of the amygdala bordering the periamygdaloid cortex laterally.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102583", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002891#cortical-amygdaloid-nucleus-1", - "name": "cortical amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002891", - "synonym": [ - "CoA", - "cortex periamygdaloideus", - "cortical amygdala", - "cortical amygdalar area", - "cortical amygdalar nucleus", - "nucleus amygdalae corticalis", - "nucleus corticalis amygdalae", - "posterior amygdaloid area", - "posterior cortical amygdalar nucleus", - "posterior cortical amygdaloid nucleus", - "posterior cortical nucleus", - "posterior cortical nucleus of amygdala", - "posterior cortical nucleus of the amygdala", - "ventral cortical amygdaloid nucleus", - "ventral cortical nucleus" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerI.jsonld b/instances/UBERONParcellation/corticalLayerI.jsonld deleted file mode 100644 index 0b1849fb8..000000000 --- a/instances/UBERONParcellation/corticalLayerI.jsonld +++ /dev/null @@ -1,34 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerI", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The most superficial layer of the neocortex characterized by a paucity of cell bodies.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107367", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005390#neocortex-layer-1", - "name": "cortical layer I", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005390", - "synonym": [ - "cortical layer 1", - "lamina 1", - "lamina I", - "lamina molecularis isocorticis", - "layer 1", - "layer 1 of neocortex", - "layer I", - "layer i", - "layer I of neocortex", - "molecular layer of cerebral cortex", - "molecular layer of isocortex", - "molecular layer of neocortex", - "neocortex layer 1", - "neocortex layer I", - "neocortex molecular layer", - "neocortex plexiform layer", - "neocortical layer 1", - "neocortical layer I", - "plexiform layer of neocortex" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerII.jsonld b/instances/UBERONParcellation/corticalLayerII.jsonld deleted file mode 100644 index dd57e8c63..000000000 --- a/instances/UBERONParcellation/corticalLayerII.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerII", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107368", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005391#neocortex-layer-2", - "name": "cortical layer II", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005391", - "synonym": [ - "cortical layer 2", - "external granular layer of isocortex", - "external granular layer of neocortex", - "external granule cell layer of neocortex", - "lamina 2", - "lamina granularis externa isocorticis", - "lamina II", - "layer 2", - "layer 2 of neocortex", - "layer II", - "layer ii", - "layer II of neocortex", - "neocortex layer 2", - "neocortex layer II", - "neocortical layer 2", - "neocortical layer II" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerIII.jsonld b/instances/UBERONParcellation/corticalLayerIII.jsonld deleted file mode 100644 index 28d09598c..000000000 --- a/instances/UBERONParcellation/corticalLayerIII.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerIII", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107369", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005392#neocortex-layer-3", - "name": "cortical layer III", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005392", - "synonym": [ - "cortical layer 3", - "external pyramidal cell layer", - "external pyramidal layer of isocortex", - "external pyramidal layer of neocortex", - "lamina 3", - "lamina III", - "lamina pyramidalis externa isocorticis", - "layer 3", - "layer 3 of neocortex", - "layer III", - "layer iii", - "layer III of neocortex", - "neocortex external pyramidal cell layer", - "neocortex layer 3", - "neocortex layer III", - "neocortical layer 3", - "neocortical layer III" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerIV.jsonld b/instances/UBERONParcellation/corticalLayerIV.jsonld deleted file mode 100644 index 8bf88bc87..000000000 --- a/instances/UBERONParcellation/corticalLayerIV.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerIV", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107370", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005393#neocortex-layer-4", - "name": "cortical layer IV", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005393", - "synonym": [ - "cortical layer 4", - "internal granular layer of isocortex", - "internal granular layer of neocortex", - "internal granule cell layer of neocortex", - "lamina 4", - "lamina granularis interna isocorticis", - "lamina IV", - "layer 4", - "layer 4 of neocortex", - "layer IV", - "layer iv", - "layer IV of neocortex", - "neocortex internal granule cell layer", - "neocortex layer 4", - "neocortex layer IV", - "neocortical layer 4", - "neocortical layer IV" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerV.jsonld b/instances/UBERONParcellation/corticalLayerV.jsonld deleted file mode 100644 index 26bd8d3b0..000000000 --- a/instances/UBERONParcellation/corticalLayerV.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerV", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107371", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005394#neocortex-layer-5", - "name": "cortical layer V", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005394", - "synonym": [ - "cortical layer 5", - "internal pyramidal cell layer of neocortex", - "internal pyramidal layer of isocortex", - "lamina 5", - "lamina ganglionaris", - "lamina pyramidalis interna", - "lamina pyramidalis interna isocorticis", - "lamina V", - "layer 5", - "layer 5 of neocortex", - "layer V", - "layer v", - "layer V of neocortex", - "neocortex layer 5", - "neocortex layer V", - "neocortical layer 5", - "neocortical layer V" - ] -} diff --git a/instances/UBERONParcellation/corticalLayerVI.jsonld b/instances/UBERONParcellation/corticalLayerVI.jsonld deleted file mode 100644 index ddb8f57b2..000000000 --- a/instances/UBERONParcellation/corticalLayerVI.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticalLayerVI", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Innermost layer of neocortex lying deep to the internal pyramidal cell layer defined cytoarchitecturally by cells of varying size.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107374", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005395#neocortex-layer-6", - "name": "cortical layer VI", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005395", - "synonym": [ - "cortical layer 6", - "lamina 6", - "lamina multiformis", - "lamina multiformis isocorticis", - "lamina VI", - "layer 6", - "layer 6 of neocortex", - "layer VI", - "layer vi", - "layer VI of neocortex", - "multiform layer of isocortex", - "multiform layer of neocortex", - "neocortex layer 6", - "neocortex layer VI", - "neocortical layer 6", - "neocortical layer VI", - "pleiomorphic layer of neocortex" - ] -} diff --git a/instances/UBERONParcellation/corticomedialNuclearComplex.jsonld b/instances/UBERONParcellation/corticomedialNuclearComplex.jsonld deleted file mode 100644 index 633c88f09..000000000 --- a/instances/UBERONParcellation/corticomedialNuclearComplex.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticomedialNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Corticomedial nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the amygdala.", - "description": "These structures are referred to as nuclei but have a layered cortical like structure. These areas include the anterior amygdaloid area, posterior amygdaloid area, the periamygdaloid cortex, and the bed nucleus of the accessory olfactory tract.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102590", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006108#corticomedial-nuclear-complex-1", - "name": "corticomedial nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006108", - "synonym": [ - "amygdalar corticomedial nucleus", - "CMA", - "corpus amygdaloideum pars corticomedialis", - "corpus amygdaloideum pars olfactoria", - "corticomedial nuclear complex", - "corticomedial nuclear group", - "corticomedial nuclei of amygdala", - "pars corticomedialis (Corpus amygdaloideum)", - "set of corticomedial nuclei of amygdala" - ] -} diff --git a/instances/UBERONParcellation/corticospinalTract.jsonld b/instances/UBERONParcellation/corticospinalTract.jsonld deleted file mode 100644 index 5d788d649..000000000 --- a/instances/UBERONParcellation/corticospinalTract.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticospinalTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'corticospinal tract' is a white matter fibre bundle that arise from the pyramidal cells within the cerebral cortex layer V of the precentral motor area, the premotor area and the postcentral gyrus, then descend into and through the medulla to form the lateral corticospinal tract and the anterior corticospinal tract.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109556", - "knowledgeSpaceLink": null, - "name": "corticospinal tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002707", - "synonym": [ - "corticospinal fibers", - "fasciculus cerebro-spinalis", - "fasciculus pyramidalis", - "fibrae corticospinales", - "tractus cortico-spinalis", - "tractus corticospinalis", - "tractus pyramidalis" - ] -} diff --git a/instances/UBERONParcellation/corticotectalTract.jsonld b/instances/UBERONParcellation/corticotectalTract.jsonld deleted file mode 100644 index 00268eb74..000000000 --- a/instances/UBERONParcellation/corticotectalTract.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/corticotectalTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Corticotectal tract' is a tract of brain. It is part of the midbrain tectum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102591", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002556#corticotectal-tract-1", - "name": "corticotectal tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002556", - "synonym": [ - "cortico-tectal tract", - "corticotectal fibers", - "corticotectal fibres", - "fibrae corticotectales", - "tractus corticotectalis" - ] -} diff --git a/instances/UBERONParcellation/cranialNerveII.jsonld b/instances/UBERONParcellation/cranialNerveII.jsonld deleted file mode 100644 index 3ebabe5ab..000000000 --- a/instances/UBERONParcellation/cranialNerveII.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cranialNerveII", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'cranial nerve II' is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724691", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000941#optic-nerve", - "name": "cranial nerve II", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000941", - "synonym": [ - "02 optic nerve", - "cranial II", - "nervus opticus", - "nervus opticus [II]", - "optic II", - "optic II nerve", - "optic nerve [II]", - "second cranial nerve" - ] -} diff --git a/instances/UBERONParcellation/cuneateFasciculusOfMedulla.jsonld b/instances/UBERONParcellation/cuneateFasciculusOfMedulla.jsonld deleted file mode 100644 index 44092a921..000000000 --- a/instances/UBERONParcellation/cuneateFasciculusOfMedulla.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cuneateFasciculusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cuneate fasciculus of medulla' is a cuneate fasciculus, fasciculus of brain and tract of brain. It is part of the medulla oblongata.", - "description": "Part of cuneate fasciculus found in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102667", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002642#cuneate-fasciculus-of-medulla-1", - "name": "cuneate fasciculus of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002642", - "synonym": [ - "cu", - "fasciculus cuneatus (myelencephali)", - "nucleus pulvinaris oromedialis (Hassler)" - ] -} diff --git a/instances/UBERONParcellation/cuneiformNucleus.jsonld b/instances/UBERONParcellation/cuneiformNucleus.jsonld deleted file mode 100644 index 0179a0268..000000000 --- a/instances/UBERONParcellation/cuneiformNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cuneiformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cuneiform nucleus' is a nucleus of midbrain reticular formation.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102671", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002696#cuneiform-nucleus-1", - "name": "cuneiform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002696", - "synonym": [ - "area parabigeminalis (Mai)", - "CnF", - "cuneiform nucleus (Castaldi)", - "cunieform nucleus", - "nucleus cuneiformis", - "parabigeminal area (mai)" - ] -} diff --git a/instances/UBERONParcellation/cuneocerebellarTract.jsonld b/instances/UBERONParcellation/cuneocerebellarTract.jsonld deleted file mode 100644 index 58d9164a3..000000000 --- a/instances/UBERONParcellation/cuneocerebellarTract.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cuneocerebellarTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cuneocerebellar tract' is a tract of brain. It is part of the white matter of medulla oblongata.", - "description": "White matter tract that originates from the cuneate and external cuneate nuclei. It relays ascending spinal fibers in the dorsal funiculus and conveys information from forelimbs to the cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102673", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002640#cuneocerebellar-tract-1", - "name": "cuneocerebellar tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002640", - "synonym": [ - "CCT", - "cuneocerebellar fibers", - "tractus cuneocerebelli" - ] -} diff --git a/instances/UBERONParcellation/cuneusCortex.jsonld b/instances/UBERONParcellation/cuneusCortex.jsonld deleted file mode 100644 index a85191ec5..000000000 --- a/instances/UBERONParcellation/cuneusCortex.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cuneusCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cuneus cortex' is an occipital gyrus.", - "description": "Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102674", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006092#cuneus-cortex-1", - "name": "cuneus cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006092", - "synonym": [ - "CuG", - "cuneate lobule", - "cuneus", - "cuneus cortex", - "cuneus gyrus", - "cuneus of hemisphere", - "gyrus cuneus" - ] -} diff --git a/instances/UBERONParcellation/cytoarchitecturalPartOfDentateGyrus.jsonld b/instances/UBERONParcellation/cytoarchitecturalPartOfDentateGyrus.jsonld deleted file mode 100644 index 510e9794b..000000000 --- a/instances/UBERONParcellation/cytoarchitecturalPartOfDentateGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/cytoarchitecturalPartOfDentateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Cytoarchitectural part of dentate gyrus' is a regional part of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102762", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023564#cytoarchitectural-part-of-dentate-gyrus-1", - "name": "cytoarchitectural part of dentate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023564", - "synonym": [ - "cytoarchitectural part of dentate gyrus" - ] -} diff --git a/instances/UBERONParcellation/decussationOfSuperiorCerebellarPeduncle.jsonld b/instances/UBERONParcellation/decussationOfSuperiorCerebellarPeduncle.jsonld deleted file mode 100644 index 1b6101f22..000000000 --- a/instances/UBERONParcellation/decussationOfSuperiorCerebellarPeduncle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/decussationOfSuperiorCerebellarPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Decussation of superior cerebellar peduncle' is a neural decussation. It is part of the midbrain tegmentum and superior cerebellar peduncle.", - "description": "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102963", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002588#decussation-of-superior-cerebellar-peduncle-1", - "name": "decussation of superior cerebellar peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002588", - "synonym": null -} diff --git a/instances/UBERONParcellation/decussationOfTrochlearNerve.jsonld b/instances/UBERONParcellation/decussationOfTrochlearNerve.jsonld deleted file mode 100644 index 7eb6ca1ed..000000000 --- a/instances/UBERONParcellation/decussationOfTrochlearNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/decussationOfTrochlearNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Decussation of trochlear nerve' is a neural decussation. It is part of the pontine tegmentum.", - "description": "The crossing of the two trochlear nerves at their exit through the velum medullare anterius.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102964", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002787#decussation-of-trochlear-nerve-1", - "name": "decussation of trochlear nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002787", - "synonym": null -} diff --git a/instances/UBERONParcellation/densocellularPartOfMedialDorsalNucleus.jsonld b/instances/UBERONParcellation/densocellularPartOfMedialDorsalNucleus.jsonld deleted file mode 100644 index 25dbd70eb..000000000 --- a/instances/UBERONParcellation/densocellularPartOfMedialDorsalNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/densocellularPartOfMedialDorsalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Densocellular part of medial dorsal nucleus' is a gray matter of diencephalon. It is part of the medial dorsal nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103047", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002645#densocellular-part-of-medial-dorsal-nucleus-1", - "name": "densocellular part of medial dorsal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002645", - "synonym": [ - "densocellular part of the medial dorsal nucleus", - "MDD", - "nucleus medialis dorsalis", - "nucleus medialis dorsalis paralamellaris (Hassler)", - "pars densocellularis" - ] -} diff --git a/instances/UBERONParcellation/dentateGyrusGranuleCellLayer.jsonld b/instances/UBERONParcellation/dentateGyrusGranuleCellLayer.jsonld deleted file mode 100644 index 1d47cc51d..000000000 --- a/instances/UBERONParcellation/dentateGyrusGranuleCellLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dentateGyrusGranuleCellLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick.", - "description": "'Dentate gyrus granule cell layer' is a layer of dentate gyrus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103056", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005381#dentate-gyrus-granule-cell-layer-1", - "name": "dentate gyrus granule cell layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005381", - "synonym": null -} diff --git a/instances/UBERONParcellation/dentateGyrusMolecularLayer.jsonld b/instances/UBERONParcellation/dentateGyrusMolecularLayer.jsonld deleted file mode 100644 index 4bfef8735..000000000 --- a/instances/UBERONParcellation/dentateGyrusMolecularLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dentateGyrusMolecularLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The molecular layer of the dentate gyrus that is bounded by the pial surface superficially and the dentate gyrus granule cell layer deep. It is divided into 2 or more sublayers.", - "description": "'Dentate gyrus molecular layer' is a layer of dentate gyrus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103074", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004679#dentate-gyrus-molecular-layer-1", - "name": "dentate gyrus molecular layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004679", - "synonym": null -} diff --git a/instances/UBERONParcellation/dentateGyrusOfHippocampalFormation.jsonld b/instances/UBERONParcellation/dentateGyrusOfHippocampalFormation.jsonld deleted file mode 100644 index 0d450c7c9..000000000 --- a/instances/UBERONParcellation/dentateGyrusOfHippocampalFormation.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dentateGyrusOfHippocampalFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dentate gyrus of hippocampal formation' is a regional part of brain. It is part of the hippocampal formation.", - "description": "Part of the hippocampal formation forming a \"V\" or \"U\" shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103048", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001885#dentate-gyrus", - "name": "dentate gyrus of hippocampal formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001885", - "synonym": [ - "area dentata", - "dentate area", - "dentate area (dentate gyrus)", - "dentate gyrus", - "DG", - "fascia dentata", - "gyrus dentatus", - "hippocampal dentate gyrus" - ] -} diff --git a/instances/UBERONParcellation/dentateNucleus.jsonld b/instances/UBERONParcellation/dentateNucleus.jsonld deleted file mode 100644 index 5274785ca..000000000 --- a/instances/UBERONParcellation/dentateNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dentateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dentate nucleus' is a nucleus of cerebellar nuclear complex.", - "description": "The largest and most lateral of the deep cerebellum nuclei; it receives axons of Purkinje cells in the lateral cerebellar hemisphere (neocerebellum) and receives its afferents from the premotor cortex and the supplementary motor cortex through the pontocerebellar system, and its efferents project through the superior cerebellar peduncle and is a major source of its fibers", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103084", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002132#dentate-nucleus-1", - "name": "dentate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002132", - "synonym": [ - "dentate cerebellar nucleus", - "dentate nucleus", - "dentate nucleus (Vicq d'Azyr)", - "dentatothalamocortical fibers", - "lateral cerebellar nucleus", - "lateral nucleus of cerebellum", - "nucleus dentatus", - "nucleus dentatus cerebelli", - "nucleus lateralis cerebelli" - ] -} diff --git a/instances/UBERONParcellation/dentatothalamicTract.jsonld b/instances/UBERONParcellation/dentatothalamicTract.jsonld deleted file mode 100644 index e899f922f..000000000 --- a/instances/UBERONParcellation/dentatothalamicTract.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dentatothalamicTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dentatothalamic tract' is a tract of brain. It is part of the midbrain tegmentum.", - "description": "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103087", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002594#dentatothalamic-tract-1", - "name": "dentatothalamic tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002594", - "synonym": [ - "dentatothalamic fibers", - "DT", - "tractus dentatothalamicus" - ] -} diff --git a/instances/UBERONParcellation/diagonalBandOfBroca.jsonld b/instances/UBERONParcellation/diagonalBandOfBroca.jsonld deleted file mode 100644 index 06042339c..000000000 --- a/instances/UBERONParcellation/diagonalBandOfBroca.jsonld +++ /dev/null @@ -1,35 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/diagonalBandOfBroca", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Diagonal band of Broca' is a neuron projection bundle and central nervous system cell part cluster. It is part of the cerebral hemisphere white matter.", - "description": "A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala. (Mondofacto: http://www.mondofacto.com/facts/dictionary?Broca%27s%20diagonal%20band)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103188", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002741#diagonal-band", - "name": "diagonal band of Broca", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002741", - "synonym": [ - "band of Broca", - "bandaletta diagonalis (Broca)", - "bandeletta diagonalis", - "Broca's diagonal band", - "Broca's diagonal gyrus", - "diagonal band", - "diagonal band of Broca", - "diagonal band(Broca)", - "diagonal gyrus", - "fasciculus diagonalis Brocae", - "fasciculus olfactorius", - "fasciculus olfactorius (hippocampi)", - "fasciculus olfactorius cornu Ammonis", - "fasciculus septo-amygdalicus", - "gyrus diagonalis", - "gyrus diagonalis rhinencephli", - "olfactory fasciculus", - "Olfactory radiations of Zuckerkandl", - "stria diagonalis", - "stria diagonalis (Broca)" - ] -} diff --git a/instances/UBERONParcellation/diencephalon.jsonld b/instances/UBERONParcellation/diencephalon.jsonld deleted file mode 100644 index 8775ba9d6..000000000 --- a/instances/UBERONParcellation/diencephalon.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/diencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Diencephalon' is a regional part of brain. It is part of the forebrain.", - "description": "Part of the brain consisting of the paired caudal parts of the prosencephalon from which the Thalamus; Hypothalamus; Epithalamus; and Subthalamus are derived.(MeSH)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103217", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001894#diencephalon-1", - "name": "diencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001894", - "synonym": [ - "between brain", - "betweenbrain", - "DiE", - "diencephalon", - "Interbrain", - "mature diencephalon", - "thalamencephalon" - ] -} diff --git a/instances/UBERONParcellation/diffuseReticularNucleus.jsonld b/instances/UBERONParcellation/diffuseReticularNucleus.jsonld deleted file mode 100644 index 703ca7b7a..000000000 --- a/instances/UBERONParcellation/diffuseReticularNucleus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/diffuseReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Diffuse reticular nucleus' is a parabrachial nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105881", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002869#diffuse-reticular-nucleus-1", - "name": "diffuse reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002869", - "synonym": [ - "DRt", - "diffuse reticular nucleus", - "Kolliker-Fuse nucleus", - "nucleus subparabrachialis", - "K\u00c3\u00b6lliker-Fuse nucleus", - "Koelliker-Fuse nucleus", - "nucleus of Kolliker-Fuse", - "subparabrachial nucleus", - "Kolloker-Fuse nucleus", - "kvlliker-Fuse subnucleus", - "kvlliker-Fuse subnucleus of parabrachial nucleus", - "nucleus reticularis diffusus (Koelliker)", - "Kolliker-Fuse subnucleus", - "nucleus reticularis diffusus" - ] -} diff --git a/instances/UBERONParcellation/dorsalAccessoryInferiorOlivaryNucleus.jsonld b/instances/UBERONParcellation/dorsalAccessoryInferiorOlivaryNucleus.jsonld deleted file mode 100644 index d74fa59a2..000000000 --- a/instances/UBERONParcellation/dorsalAccessoryInferiorOlivaryNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalAccessoryInferiorOlivaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal accessory inferior olivary nucleus' is an inferior olivary nucleus.", - "description": "Regional part of inferior olivary complex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103410", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007249#dorsal-accessory-olive", - "name": "dorsal accessory inferior olivary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007249", - "synonym": [ - "DAO", - "dorsal accessory olivary nucleus", - "dorsal accessory olive", - "dorsal nucleus", - "inferior olivary complex", - "inferior olivary complex dorsalaccessory nucleus", - "inferior olive", - "inferior olive dorsal nucleus", - "nucleus olivaris accessorius posterior", - "posterior accessory olivary nucleus" - ] -} diff --git a/instances/UBERONParcellation/dorsalAcousticStria.jsonld b/instances/UBERONParcellation/dorsalAcousticStria.jsonld deleted file mode 100644 index 86fb5123b..000000000 --- a/instances/UBERONParcellation/dorsalAcousticStria.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalAcousticStria", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing fibers arising from the cochlear nuclear complex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103411", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002790#dorsal-acoustic-stria-1", - "name": "dorsal acoustic stria", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002790", - "synonym": [ - "das", - "dorsal acoustic stria (Monakow)", - "posterior acoustic stria", - "stria cochlearis posterior", - "striae acusticae dorsalis" - ] -} diff --git a/instances/UBERONParcellation/dorsalCapOfKooy.jsonld b/instances/UBERONParcellation/dorsalCapOfKooy.jsonld deleted file mode 100644 index a9652fb6d..000000000 --- a/instances/UBERONParcellation/dorsalCapOfKooy.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalCapOfKooy", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal cap of Kooy' is a regional part of brain. It is part of the inferior olivary complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103421", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014286#dorsal-cap-of-kooy-1", - "name": "dorsal cap of Kooy", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014286", - "synonym": [ - "dorsal cap of kooy" - ] -} diff --git a/instances/UBERONParcellation/dorsalCochlearNucleus.jsonld b/instances/UBERONParcellation/dorsalCochlearNucleus.jsonld deleted file mode 100644 index be266dd29..000000000 --- a/instances/UBERONParcellation/dorsalCochlearNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalCochlearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal cochlear nucleus' is a cochlear nucleus.", - "description": "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103424", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002829#dorsal-cochlear-nucleus-1", - "name": "dorsal cochlear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002829", - "synonym": [ - "DCo", - "dorsal cochlear nucleus", - "dorsal coclear nucleus", - "dorsal division of cochlear nucleus", - "nucleus cochlearis dorsalis", - "nucleus cochlearis posterior", - "posterior cochlear nucleus", - "tuberculum acousticum" - ] -} diff --git a/instances/UBERONParcellation/dorsalColumnNucleus.jsonld b/instances/UBERONParcellation/dorsalColumnNucleus.jsonld deleted file mode 100644 index f798dac0d..000000000 --- a/instances/UBERONParcellation/dorsalColumnNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalColumnNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal column nucleus' is a nucleus of medulla oblongata. It is part of the dorsal column-medial lemniscus pathway.", - "description": "A pair of nuclei in the brainstem. The name refers collectively to the cuneate nucleus and gracile nucleus, which are present at the junction between the spinal cord and the medulla oblongata. Both nuclei contain secondary neurons of the dorsal column-medial lemniscus pathway,", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103429", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0018238#dorsal-column-nucleus", - "name": "dorsal column nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0018238", - "synonym": [ - "dorsal column nuclei" - ] -} diff --git a/instances/UBERONParcellation/dorsalExternalArcuateFiberBundle.jsonld b/instances/UBERONParcellation/dorsalExternalArcuateFiberBundle.jsonld deleted file mode 100644 index f33b29ccf..000000000 --- a/instances/UBERONParcellation/dorsalExternalArcuateFiberBundle.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalExternalArcuateFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal external arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103433", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006089#dorsal-external-arcuate-fiber-bundle-1", - "name": "dorsal external arcuate fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006089", - "synonym": [ - "dorsal external arcuate fiber bundle", - "dorsal external arcuate fibers", - "dorsal external arcuate tract", - "dorsal superficial arcuate fibers", - "ear", - "external arcuate fibers", - "fibrae arcuatae externae dorsales", - "fibrae arcuatae externae posteriores" - ] -} diff --git a/instances/UBERONParcellation/dorsalHypothalamicArea.jsonld b/instances/UBERONParcellation/dorsalHypothalamicArea.jsonld deleted file mode 100644 index 4a32a0178..000000000 --- a/instances/UBERONParcellation/dorsalHypothalamicArea.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalHypothalamicArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal hypothalamic area' is a regional part of brain. It is part of the hypothalamus.", - "description": "A relatively small region of the hypothalamus located inferior to the hypothalamic sulcus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103438", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002954#dorsal-hypothalamic-area-1", - "name": "dorsal hypothalamic area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002954", - "synonym": [ - "area dorsalis hypothalami", - "area hypothalamica dorsalis", - "DH", - "dorsal hypothalamic region", - "dorsal hypothalamic zone", - "nucleus hypothalamicus dorsalis" - ] -} diff --git a/instances/UBERONParcellation/dorsalLongitudinalFasciculus.jsonld b/instances/UBERONParcellation/dorsalLongitudinalFasciculus.jsonld deleted file mode 100644 index 6769af78c..000000000 --- a/instances/UBERONParcellation/dorsalLongitudinalFasciculus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalLongitudinalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal longitudinal fasciculus' is a fasciculus of brain.", - "description": "A fiber bundle containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames)]]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103442", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003045#dorsal-longitudinal-fasciculus-1", - "name": "dorsal longitudinal fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003045", - "synonym": [ - "accessory cochlear nucleus", - "bundle of Schutz", - "dlf", - "dorsal longitudinal fascicle", - "fasciculus longitudinalis dorsalis", - "fasciculus longitudinalis posterior", - "fasciculus of Schutz", - "nucleus acustici accessorici", - "nucleus cochlearis anterior", - "nucleus cochlearis ventralis", - "posterior longitudinal fasciculus", - "ventral cochlear nuclei", - "ventral division of cochlear nucleus" - ] -} diff --git a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfHypothalamus.jsonld b/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfHypothalamus.jsonld deleted file mode 100644 index e92e6c3a0..000000000 --- a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfHypothalamus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal longitudinal fasciculus of hypothalamus' is a fasciculus of brain. It is part of the lateral hypothalamic area and dorsal longitudinal fasciculus.", - "description": "Part of dorsal longitudinal fasciculus located within the hypothalamus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103443", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003008#dorsal-longitudinal-fasciculus-of-hypothalamus-1", - "name": "dorsal longitudinal fasciculus of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003008", - "synonym": [ - "dlfh", - "dorsal longitudinal fasciculus of the hypothalamus", - "fasciculus longitudinalis dorsalis (hypothalami)" - ] -} diff --git a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMedulla.jsonld b/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMedulla.jsonld deleted file mode 100644 index d1338125e..000000000 --- a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMedulla.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal longitudinal fasciculus of medulla' is a fasciculus of brain. It is part of the medulla oblongata.", - "description": "Part of dorsal longitudinal fasciculus located in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103444", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002646#dorsal-longitudinal-fasciculus-of-medulla-1", - "name": "dorsal longitudinal fasciculus of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002646", - "synonym": [ - "bundle of Schutz of medulla", - "dorsal longitudinal fasciculus of the medulla", - "fasciculus longitudinalis dorsalis (myelencephali)", - "fasciculus of Schutz of medulla", - "medulla bundle of Schutz", - "medulla dorsal longitudinal fasciculus", - "medulla fasciculus of Schutz", - "medulla posterior longitudinal fasciculus", - "posterior longitudinal fasciculus of medulla" - ] -} diff --git a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMidbrain.jsonld b/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMidbrain.jsonld deleted file mode 100644 index ca1e63265..000000000 --- a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMidbrain.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal longitudinal fasciculus of midbrain' is a fasciculus of brain. It is part of the midbrain tegmentum and dorsal longitudinal fasciculus.", - "description": "Part of dorsal longitudinal fasciculus located in the midbrain tegmentum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103445", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003005#dorsal-longitudinal-fasciculus-of-midbrain-1", - "name": "dorsal longitudinal fasciculus of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003005", - "synonym": [ - "bundle of Schutz of midbrain", - "dlfmb", - "dorsal longitudinal fasciculus of the midbrain", - "fasciculus longitudinalis dorsalis (mesencephali)", - "fasciculus of Schutz of midbrain", - "midbrain bundle of Schutz", - "midbrain dorsal longitudinal fasciculus", - "midbrain fasciculus of Schutz", - "midbrain posterior longitudinal fasciculus", - "posterior longitudinal fasciculus of midbrain" - ] -} diff --git a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfPons.jsonld b/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfPons.jsonld deleted file mode 100644 index d10a71e4f..000000000 --- a/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfPons.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalLongitudinalFasciculusOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal longitudinal fasciculus of pons' is a fasciculus of brain. It is part of the pons and dorsal longitudinal fasciculus.", - "description": "Part of dorsal longitudinal fasciculus located within the pons", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103447", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002793#dorsal-longitudinal-fasciculus-of-pons-1", - "name": "dorsal longitudinal fasciculus of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002793", - "synonym": [ - "dorsal longitudinal fasciculus of the pons", - "fasciculus longitudinalis dorsalis (pontis)" - ] -} diff --git a/instances/UBERONParcellation/dorsalMotorNucleusOfVagusNerve.jsonld b/instances/UBERONParcellation/dorsalMotorNucleusOfVagusNerve.jsonld deleted file mode 100644 index 98c115f50..000000000 --- a/instances/UBERONParcellation/dorsalMotorNucleusOfVagusNerve.jsonld +++ /dev/null @@ -1,37 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalMotorNucleusOfVagusNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal motor nucleus of vagus nerve' is a nucleus of medulla oblongata and motor nucleus of vagal nerve.", - "description": "A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103451", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002870#dorsal-motor-nucleus-of-vagus-nerve-1", - "name": "dorsal motor nucleus of vagus nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002870", - "synonym": [ - "10N", - "dorsal efferent nucleus of vagus", - "dorsal motor nucleus", - "dorsal motor nucleus of the vagus", - "dorsal motor nucleus of the vagus (vagal nucleus)", - "dorsal motor nucleus of the vagus nerve", - "dorsal motor nucleus of vagus", - "dorsal motor nucleus of vagus nerve", - "dorsal motor nucleus of vagus X nerve", - "dorsal motor nucleus of X", - "dorsal motor vagal nucleus", - "dorsal nucleus of the vagus nerve", - "dorsal nucleus of vagus nerve", - "dorsal vagal nucleus", - "nucleus alaris", - "nucleus alaris (Oertel)", - "nucleus dorsalis motorius nervi vagi", - "nucleus dorsalis nervi vagi", - "nucleus posterior nervi vagi", - "nucleus vagalis dorsalis", - "posterior nucleus of vagus nerve", - "vagus nucleus" - ] -} diff --git a/instances/UBERONParcellation/dorsalNucleusOfLateralLemniscus.jsonld b/instances/UBERONParcellation/dorsalNucleusOfLateralLemniscus.jsonld deleted file mode 100644 index 8958b3c76..000000000 --- a/instances/UBERONParcellation/dorsalNucleusOfLateralLemniscus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalNucleusOfLateralLemniscus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal nucleus of lateral lemniscus' is a nucleus of lateral lemniscus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103457", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003006#dorsal-nucleus-of-lateral-lemniscus-1", - "name": "dorsal nucleus of lateral lemniscus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003006", - "synonym": [ - "DLL", - "dorsal nucleus of the lateral lemniscus", - "dorsal part", - "nucleus lemnisci lateralis dorsalis", - "nucleus lemnisci lateralis pars dorsalis", - "nucleus of the lateral lemniscus", - "nucleus of the lateral lemniscus dorsal part", - "nucleus posterior lemnisci lateralis", - "posterior nucleus of lateral lemniscus" - ] -} diff --git a/instances/UBERONParcellation/dorsalNucleusOfMedialGeniculateBody.jsonld b/instances/UBERONParcellation/dorsalNucleusOfMedialGeniculateBody.jsonld deleted file mode 100644 index 52dca4a38..000000000 --- a/instances/UBERONParcellation/dorsalNucleusOfMedialGeniculateBody.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalNucleusOfMedialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal nucleus of medial geniculate body' is a nucleus of dorsal thalamus. It is part of the medial geniculate body.", - "description": "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103458", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002758#dorsal-nucleus-of-medial-geniculate-body-1", - "name": "dorsal nucleus of medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002758", - "synonym": [ - "DMG", - "dorsal medial geniculate nucleus", - "dorsal nucleus of medial geniculate body", - "dorsal nucleus of medial geniculate complex", - "dorsal nucleus of the medial geniculate body", - "dorsal part", - "medial geniculate complex", - "medial geniculate complex dorsal part", - "medial geniculate nucleus", - "medial geniculate nucleus dorsal part", - "MGD", - "nucleus corporis geniculati medialis", - "nucleus dorsalis coporis geniculati medialis", - "nucleus dorsalis corporis geniculati medialis", - "nucleus geniculatus medialis fibrosus (Hassler)", - "nucleus geniculatus medialis pars dorsalis", - "pars dorsalis" - ] -} diff --git a/instances/UBERONParcellation/dorsalNucleusOfTrapezoidBody.jsonld b/instances/UBERONParcellation/dorsalNucleusOfTrapezoidBody.jsonld deleted file mode 100644 index e7ce9a92e..000000000 --- a/instances/UBERONParcellation/dorsalNucleusOfTrapezoidBody.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalNucleusOfTrapezoidBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal nucleus of trapezoid body' is a nucleus of trapezoid body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103459", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009053#dorsal-nucleus-of-trapezoid-body-1", - "name": "dorsal nucleus of trapezoid body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009053", - "synonym": [ - "dorsal nucleus of trapezoid body", - "nucleus dorsalis corporis trapezoidei" - ] -} diff --git a/instances/UBERONParcellation/dorsalOculomotorNucleus.jsonld b/instances/UBERONParcellation/dorsalOculomotorNucleus.jsonld deleted file mode 100644 index 8841a9d25..000000000 --- a/instances/UBERONParcellation/dorsalOculomotorNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103460", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002964#dorsal-oculomotor-nucleus-1", - "name": "dorsal oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002964", - "synonym": [ - "D3", - "dorsal nucleus of oculomotor nuclear complex", - "dorsal oculomotor cell column", - "nucleus nervi oculomotorii", - "pars dorsalis" - ] -} diff --git a/instances/UBERONParcellation/dorsalPallidum.jsonld b/instances/UBERONParcellation/dorsalPallidum.jsonld deleted file mode 100644 index bcae9bcc5..000000000 --- a/instances/UBERONParcellation/dorsalPallidum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalPallidum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal pallidum' is a cerebral hemisphere gray matter and pallidum. It is part of the globus pallidus.", - "description": "The predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 ).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724298", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006516#dorsal-pallidum", - "name": "dorsal pallidum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006516", - "synonym": null -} diff --git a/instances/UBERONParcellation/dorsalParamedianReticularNucleus.jsonld b/instances/UBERONParcellation/dorsalParamedianReticularNucleus.jsonld deleted file mode 100644 index c86325e82..000000000 --- a/instances/UBERONParcellation/dorsalParamedianReticularNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalParamedianReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal paramedian reticular nucleus' is a nucleus of medulla oblongata. It is part of the paramedian medullary reticular complex.", - "description": "Small nucleus in the brainstem of human, located adjacent and medial to the nucleus prepositus in the dorsal medulla, described in several atlases of human brain stem. In transverse sections, it is oval with its long axis aligned with the dorsal border of the brainstem. It begins at about the same A-P level as the nucleus prepositus, just rostral to the hypoglossal nucleus. It includes calretinin immunoreactive large cells with oval or polygonal cell bodies. Cells are not immunoreactive for either calbindin or parvalbumin, but a few fibers immunoreactive to each protein are found within its central region. Cells in PMD are also immunoreactive to nNOS, and immunoreactivity to a neurofilament protein shows many labeled cells and fibers. According to Baizer et al., no equivalent structure was observed in the cat, rat, mouse or monkey atlas although they did not look at the brains of the great apes.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107786", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016827#dorsal-paramedian-reticular-nucleus", - "name": "dorsal paramedian reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016827", - "synonym": [ - "dorsal paramedian nuclei of raphe", - "dorsal paramedian nucleus", - "dorsal paramedian reticular nucleus", - "nucleo paramediano dorsale@it", - "nucleus paramedianus dorsalis", - "nucleus paramedianus posterior", - "nucleus reticularis paramedianus myelencephali", - "nzcleo reticular paramediano dorsal@es", - "PMD", - "posterior paramedian nucleus" - ] -} diff --git a/instances/UBERONParcellation/dorsalPlusVentralThalamus.jsonld b/instances/UBERONParcellation/dorsalPlusVentralThalamus.jsonld deleted file mode 100644 index e4ae72975..000000000 --- a/instances/UBERONParcellation/dorsalPlusVentralThalamus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalPlusVentralThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal plus ventral thalamus' is a regional part of brain. It is part of the thalamic complex.", - "description": "Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH).The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111657", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001897#thalamus", - "name": "dorsal plus ventral thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001897", - "synonym": [ - "Parencephalon", - "Th", - "thalamencephalon", - "thalami", - "thalamus", - "thalamus opticus", - "wider thalamus" - ] -} diff --git a/instances/UBERONParcellation/dorsalRapheNucleus.jsonld b/instances/UBERONParcellation/dorsalRapheNucleus.jsonld deleted file mode 100644 index 3590bd8d9..000000000 --- a/instances/UBERONParcellation/dorsalRapheNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalRapheNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal raphe nucleus' is a nucleus of midbrain reticular formation. It is part of the raphe nuclei.", - "description": "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103469", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002043#dorsal-raphe-nucleus-1", - "name": "dorsal raphe nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002043", - "synonym": null -} diff --git a/instances/UBERONParcellation/dorsalSeptalNucleus.jsonld b/instances/UBERONParcellation/dorsalSeptalNucleus.jsonld deleted file mode 100644 index 39e84777e..000000000 --- a/instances/UBERONParcellation/dorsalSeptalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalSeptalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal septal nucleus' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103478", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002931#dorsal-septal-nucleus-1", - "name": "dorsal septal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002931", - "synonym": [ - "nucleus dorsalis septi", - "nucleus septalis dorsalis" - ] -} diff --git a/instances/UBERONParcellation/dorsalStriatum.jsonld b/instances/UBERONParcellation/dorsalStriatum.jsonld deleted file mode 100644 index 60ba57a52..000000000 --- a/instances/UBERONParcellation/dorsalStriatum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalStriatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal striatum' is a gray matter of telencephalon. It is part of the striatum.", - "description": "Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103481", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005382#dorsal-striatum-1", - "name": "dorsal striatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005382", - "synonym": [ - "caudoputamen", - "corpus striatum", - "dorsal basal ganglia", - "dorsal basal ganglion", - "StD", - "striated body", - "striatum dorsal region", - "striatum dorsale" - ] -} diff --git a/instances/UBERONParcellation/dorsalTegmentalDecussation.jsonld b/instances/UBERONParcellation/dorsalTegmentalDecussation.jsonld deleted file mode 100644 index 1c3048e9f..000000000 --- a/instances/UBERONParcellation/dorsalTegmentalDecussation.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalTegmentalDecussation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal tegmental decussation' is a neural decussation. It is part of the midbrain tegmentum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103484", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003009#dorsal-tegmental-decussation-1", - "name": "dorsal tegmental decussation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003009", - "synonym": null -} diff --git a/instances/UBERONParcellation/dorsalTegmentalNucleus.jsonld b/instances/UBERONParcellation/dorsalTegmentalNucleus.jsonld deleted file mode 100644 index 22e24cf82..000000000 --- a/instances/UBERONParcellation/dorsalTegmentalNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalTegmentalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal tegmental nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103485", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002143#dorsal-tegmental-nucleus-1", - "name": "dorsal tegmental nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002143", - "synonym": [ - "dorsal tegmental nucleus (Gudden)", - "Dorsal tegmental nucleus of Gudden", - "DTg", - "DTN", - "ganglion dorsale tegmenti", - "gudden nucleus", - "nucleus compactus suprafascicularis", - "nucleus dorsalis tegmenti", - "nucleus dorsalis tegmenti (Gudden)", - "nucleus opticus dorsalis", - "nucleus tegmentalis dorsalis", - "nucleus tegmentalis posterior", - "nucleus tegmenti dorsale", - "posterior tegmental nucleus", - "von Gudden's nucleus" - ] -} diff --git a/instances/UBERONParcellation/dorsalTegmentalNucleusParsDorsalis.jsonld b/instances/UBERONParcellation/dorsalTegmentalNucleusParsDorsalis.jsonld deleted file mode 100644 index bd8048a20..000000000 --- a/instances/UBERONParcellation/dorsalTegmentalNucleusParsDorsalis.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalTegmentalNucleusParsDorsalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal tegmental nucleus pars dorsalis' is a regional part of brain. It is part of the dorsal tegmental nucleus.", - "description": "Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103488", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014568#dorsal-tegmental-nucleus-pars-dorsalis-1", - "name": "dorsal tegmental nucleus pars dorsalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014568", - "synonym": [ - "Dorsal tegmental nucleus of Gudden pars dorsalis", - "dorsal tegmental nucleus pars dorsalis", - "TDD" - ] -} diff --git a/instances/UBERONParcellation/dorsalTegmentalNucleusParsVentralis.jsonld b/instances/UBERONParcellation/dorsalTegmentalNucleusParsVentralis.jsonld deleted file mode 100644 index f0d28bf22..000000000 --- a/instances/UBERONParcellation/dorsalTegmentalNucleusParsVentralis.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalTegmentalNucleusParsVentralis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal tegmental nucleus pars ventralis' is a regional part of brain. It is part of the dorsal tegmental nucleus.", - "description": "Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103489", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014569#dorsal-tegmental-nucleus-pars-ventralis-1", - "name": "dorsal tegmental nucleus pars ventralis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014569", - "synonym": [ - "Dorsal tegmental nucleus of Gudden pars ventralis", - "dorsal tegmental nucleus pars ventralis", - "pars ventralis of the dorsal tegmental nucleus", - "pars ventralis of the dorsal tegmental nucleus of Gudden", - "TDV" - ] -} diff --git a/instances/UBERONParcellation/dorsalTrigeminalTract.jsonld b/instances/UBERONParcellation/dorsalTrigeminalTract.jsonld deleted file mode 100644 index 848dbbdc5..000000000 --- a/instances/UBERONParcellation/dorsalTrigeminalTract.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsalTrigeminalTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsal trigeminal tract' is a trigeminothalamic tract and tract of brain. It is part of the pontine tegmentum.", - "description": "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103494", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002797#dorsal-trigeminal-tract-1", - "name": "dorsal trigeminal tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002797", - "synonym": [ - "dorsal ascending trigeminal tract", - "dorsal division of trigeminal lemniscus", - "Dorsal secondary ascending tract of V", - "Dorsal secondary tract of V", - "dorsal trigeminal lemniscus", - "dorsal trigeminal pathway", - "dorsal trigemino-thalamic tract", - "dorsal trigeminothalamic tract", - "dorsal trigmino-thalamic tract", - "posterior trigeminothalamic tract", - "reticulothalamic tract", - "tractus trigeminalis dorsalis", - "tractus trigemino-thalamicus dorsalis", - "tractus trigeminothalamicus posterior", - "uncrossed dorsal trigeminothalamic tract" - ] -} diff --git a/instances/UBERONParcellation/dorsolateralFasciculusOfMedulla.jsonld b/instances/UBERONParcellation/dorsolateralFasciculusOfMedulla.jsonld deleted file mode 100644 index 292eec9e1..000000000 --- a/instances/UBERONParcellation/dorsolateralFasciculusOfMedulla.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsolateralFasciculusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsolateral fasciculus of medulla' is a tract of brain. It is part of the medulla oblongata.", - "description": "Part of Lissauer's tract located in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106302", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002649#dorsolateral-fasciculus", - "name": "dorsolateral fasciculus of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002649", - "synonym": [ - "dorsolateral fasciculus", - "dorsolateral fasciculus of the medulla", - "dorsolateral tract", - "fasciculus dorsolateralis", - "Lissauer marginal zone", - "lissauer's tract", - "posterolateral fasciculus", - "posterolateral tract", - "tract of Lissauer", - "tractus posterolateralis", - "zona Lissauer", - "zone of Lissauer" - ] -} diff --git a/instances/UBERONParcellation/dorsolateralPrefrontalCortex.jsonld b/instances/UBERONParcellation/dorsolateralPrefrontalCortex.jsonld deleted file mode 100644 index f4d592a1a..000000000 --- a/instances/UBERONParcellation/dorsolateralPrefrontalCortex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsolateralPrefrontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsolateral prefrontal cortex' is a regional part of brain. It is part of the cerebral cortex.", - "description": "Part of prefrontal cortex. The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46. According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47. These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas check dorsolateral prefrontal neocortex (http://purl.obolibrary.org/obo/UBERON_0009834).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103503", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009834#dorsolateral-prefrontal-cortex", - "name": "dorsolateral prefrontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009834", - "synonym": [ - "DL-PFC", - "DLPFC" - ] -} diff --git a/instances/UBERONParcellation/dorsomedialNucleusOfHypothalamus.jsonld b/instances/UBERONParcellation/dorsomedialNucleusOfHypothalamus.jsonld deleted file mode 100644 index 95e3cd914..000000000 --- a/instances/UBERONParcellation/dorsomedialNucleusOfHypothalamus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/dorsomedialNucleusOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Dorsomedial nucleus of hypothalamus' is a hypothalamic nucleus. It is part of the medial zone of hypothalamus and intermediate hypothalamic region.", - "description": "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103515", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001934#dorsomedial-nucleus-of-hypothalamus-1", - "name": "dorsomedial nucleus of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001934", - "synonym": [ - "DMH", - "dorsomedial hypothalamic nucleus", - "dorsomedial nucleus", - "dorsomedial nucleus hypothalamus", - "dorsomedial nucleus of dorsal hypothalamus", - "dorsomedial nucleus of intermediate hypothalamus", - "dorsomedial nucleus of the hypothalamus", - "nucleus dorsomedialis hypothalami", - "nucleus dorsomedialis hypothalamicae intermediae", - "nucleus hypothalamicus dorsomedialis" - ] -} diff --git a/instances/UBERONParcellation/emboliformNucleus.jsonld b/instances/UBERONParcellation/emboliformNucleus.jsonld deleted file mode 100644 index 58d9b23f9..000000000 --- a/instances/UBERONParcellation/emboliformNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/emboliformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Emboliform nucleus' is a cerebellum interpositus nucleus.", - "description": "The small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103738", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002602#emboliform-nucleus-1", - "name": "emboliform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002602", - "synonym": [ - "anterior interposed nucleus", - "anterior interpositus nucleus", - "cerebellar emboliform nucleus", - "cerebellum emboliform nucleus", - "Emb", - "embolus", - "lateral interpositus (emboliform) nucleus", - "lateral interpositus nucleus", - "nucleus emboliformis", - "nucleus emboliformis cerebelli", - "nucleus interpositus anterior", - "nucleus interpositus anterior cerebelli" - ] -} diff --git a/instances/UBERONParcellation/endopiriformNucleus.jsonld b/instances/UBERONParcellation/endopiriformNucleus.jsonld deleted file mode 100644 index c518490eb..000000000 --- a/instances/UBERONParcellation/endopiriformNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/endopiriformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum.", - "description": "'Endopiriform nucleus' is a telencephalic nucleus. It is part of the claustrum of brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103787", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014284#endopiriform-nucleus-1", - "name": "endopiriform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014284", - "synonym": [ - "endopiriform nucleus", - "layer 4 of piriform cortex", - "layer IV of piriform cortex", - "ventral claustrum" - ] -} diff --git a/instances/UBERONParcellation/entorhinalCortex.jsonld b/instances/UBERONParcellation/entorhinalCortex.jsonld deleted file mode 100644 index 87487d338..000000000 --- a/instances/UBERONParcellation/entorhinalCortex.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/entorhinalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Entorhinal cortex' is part of the parahippocampal gyrus and piriform cortex.", - "description": "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103859", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002728#entorhinal-cortex-1", - "name": "entorhinal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002728", - "synonym": [ - "Area 28 of Brodmann (Crosby)", - "area entorhinalis (28,34)", - "area entorhinalis ventralis et dorsalis", - "Brodmann's area 28", - "cortex entorhinalis", - "Ent", - "entorhinal area", - "entorhinal cortex", - "secondary olfactory cortex", - "Secondary olfactory cortical area (Carpenter)" - ] -} diff --git a/instances/UBERONParcellation/entorhinalCortexLayer2.jsonld b/instances/UBERONParcellation/entorhinalCortexLayer2.jsonld deleted file mode 100644 index 142c07581..000000000 --- a/instances/UBERONParcellation/entorhinalCortexLayer2.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/entorhinalCortexLayer2", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Entorhinal cortex layer 2' is the outermost cell layer of the entorhinal cortex.", - "description": "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. 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It is characterized by cells of various sizes and shapes with a predominance of pyramidal cells (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103864", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022327#entorhinal-cortex-layer-3", - "name": "entorhinal cortex layer 3", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022327", - "synonym": [ - "EC layer 3", - "EC layer III", - "entorhinal cortex layer III", - "entorhinal cortex pyramidal layer", - "layer 3 of entorhinal cortex", - "layer III of entorhinal cortex", - "pyramidal layer of entorhinal cortex" - ] -} diff --git a/instances/UBERONParcellation/entorhinalCortexLayer5.jsonld b/instances/UBERONParcellation/entorhinalCortexLayer5.jsonld deleted file mode 100644 index 85e8c83b2..000000000 --- a/instances/UBERONParcellation/entorhinalCortexLayer5.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/entorhinalCortexLayer5", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Entorhinal cortex layer 5' is one of the deep layers of the entorhinal cortex.", - "description": "Layer of entorhinal cortex lying superficial to layer 6 and deep to layer 4 characterized by large pyramidal neurons that are darkly stained in Nissl preparations (Adapted from Paxinos, G. 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The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103867", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022329#entorhinal-cortex-layer-6", - "name": "entorhinal cortex layer 6", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022329", - "synonym": [ - "entorhinal cortex layer VI" - ] -} diff --git a/instances/UBERONParcellation/epithalamus.jsonld b/instances/UBERONParcellation/epithalamus.jsonld deleted file mode 100644 index d981b3949..000000000 --- a/instances/UBERONParcellation/epithalamus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/epithalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Epithalamus' is a regional part of brain. It is part of the dorsal plus ventral thalamus.", - "description": "Most dorsal part of the thalamus, comprising the pineal gland and habenular nuclei in most vertebrates. In a few vertebrates, it also includes the parietal eye. (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed, 2005, pg. 345-346.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103897", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001899#epithalamus-1", - "name": "epithalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001899", - "synonym": [ - "ETh", - "epithalamus" - ] -} diff --git a/instances/UBERONParcellation/externalCapsuleOfTelencephalon.jsonld b/instances/UBERONParcellation/externalCapsuleOfTelencephalon.jsonld deleted file mode 100644 index 35184aafa..000000000 --- a/instances/UBERONParcellation/externalCapsuleOfTelencephalon.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/externalCapsuleOfTelencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'external capsule of telencephalon' is a series of white matter fibre tracts that run between the most lateral segment of the lentiform nucleus and the claustrum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724043", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NLXANAT:1010013#external-capsule-of-telencephalon", - "name": "external capsule of telencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004545", - "synonym": [ - "brain external capsule", - "capsula externa", - "corpus callosum external capsule", - "external capsule" - ] -} diff --git a/instances/UBERONParcellation/externalNucleusOfInferiorColliculus.jsonld b/instances/UBERONParcellation/externalNucleusOfInferiorColliculus.jsonld deleted file mode 100644 index 957c47f97..000000000 --- a/instances/UBERONParcellation/externalNucleusOfInferiorColliculus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/externalNucleusOfInferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'External nucleus of inferior colliculus' is a nucleus of midbrain tectum. It is part of the inferior colliculus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104042", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002571#external-nucleus-of-inferior-colliculus-1", - "name": "external nucleus of inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002571", - "synonym": [ - "external cortex of the inferior colliculus", - "external nucleus", - "external nucleus of the inferior colliculus", - "inferior colliculus", - "nucleus externus (colliculi inferioris)", - "nucleus externus colliculi inferioris", - "nucleus lateralis colliculi inferioris" - ] -} diff --git a/instances/UBERONParcellation/extrastriateCortex.jsonld b/instances/UBERONParcellation/extrastriateCortex.jsonld deleted file mode 100644 index 69f819369..000000000 --- a/instances/UBERONParcellation/extrastriateCortex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/extrastriateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Extrastriate cortex' is an aggregate regional part of brain. It is part of the visual cortex.", - "description": "A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104057", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014370#extrastriate-cortex", - "name": "extrastriate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014370", - "synonym": [ - "extrastriate areas", - "extrastriate cortex", - "extrastriate cortical area", - "peristriate cortex" - ] -} diff --git a/instances/UBERONParcellation/extremeCapsule.jsonld b/instances/UBERONParcellation/extremeCapsule.jsonld deleted file mode 100644 index 36e6a380b..000000000 --- a/instances/UBERONParcellation/extremeCapsule.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/extremeCapsule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Extreme capsule' is a cerebral hemisphere white matter.", - "description": "Thin band of fibers separating the claustrum from the insular cortex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104058", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014528#extreme-capsule-1", - "name": "extreme capsule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014528", - "synonym": [ - "band of Baillarger", - "capsula extrema" - ] -} diff --git a/instances/UBERONParcellation/facialMotorNucleus.jsonld b/instances/UBERONParcellation/facialMotorNucleus.jsonld deleted file mode 100644 index 8a1b1f45e..000000000 --- a/instances/UBERONParcellation/facialMotorNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/facialMotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Nucleus located in the pontine tegmentum containing motor neurons that innervate the muscles of the face. Some neurons that project to the cerebellum have also been identified in some species.", - "description": "'Facial motor nucleus' is a facial nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104077", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003011#facial-motor-nucleus-1", - "name": "facial motor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003011", - "synonym": null -} diff --git a/instances/UBERONParcellation/facialNerveRoot.jsonld b/instances/UBERONParcellation/facialNerveRoot.jsonld deleted file mode 100644 index 02586243e..000000000 --- a/instances/UBERONParcellation/facialNerveRoot.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/facialNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Facial nerve root' is a root of cranial nerve. It is part of the metencephalon.", - "description": "A nerve root that extends_fibers_into a facial nerve.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104076", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004674#facial-nerve-root-1", - "name": "facial nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004674", - "synonym": null -} diff --git a/instances/UBERONParcellation/fasciculusOfBrain.jsonld b/instances/UBERONParcellation/fasciculusOfBrain.jsonld deleted file mode 100644 index b0db81911..000000000 --- a/instances/UBERONParcellation/fasciculusOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fasciculusOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fasciculus of brain' is a nerve fasciculus and central nervous system cell part cluster. It is part of the brain and white matter.", - "description": "A fascicle that is part of a brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727527", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005838#fasciculus-of-brain", - "name": "fasciculus of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005838", - "synonym": null -} diff --git a/instances/UBERONParcellation/fasciolarGyrus.jsonld b/instances/UBERONParcellation/fasciolarGyrus.jsonld deleted file mode 100644 index 2e32294e8..000000000 --- a/instances/UBERONParcellation/fasciolarGyrus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fasciolarGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fasciolar gyrus' is part of the limbic lobe.", - "description": "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104114", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002601#fasciolar-gyrus-1", - "name": "fasciolar gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002601", - "synonym": [ - "Arnold)", - "fasciola cinerea", - "fasciola cinerea (Reil", - "fasciola cinereum", - "FC", - "gyrus fasciolaris", - "gyrus retrosplenialis hippocampi", - "retrosplenial gyrus of hippocampus", - "splenial gyrus" - ] -} diff --git a/instances/UBERONParcellation/fastigialNucleus.jsonld b/instances/UBERONParcellation/fastigialNucleus.jsonld deleted file mode 100644 index 7cc337ad8..000000000 --- a/instances/UBERONParcellation/fastigialNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fastigialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fastigial nucleus' is a nucleus of cerebellar nuclear complex.", - "description": "The most medial of the cerebellar nuclei; it receives its afferent input from Purkinje cells of the flocculonodular lobe and the vermis, and most of its efferent connections travel via the inferior cerebellar peduncle to the vestibular nuclei and to the medullary reticular formation", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104122", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002153#fastigial-nucleus-1", - "name": "fastigial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002153", - "synonym": [ - "Fas", - "fasciculosus thalamic nucleus", - "fastigial cerebellar nucleus", - "medial (fastigial) nucleus", - "medial cerebellar nucleus", - "medial nucleus of cerebellum", - "nucleus (motorius) tecti cerebelli", - "nucleus fastigiatus", - "nucleus fastigii", - "nucleus fastigii cerebelli", - "nucleus fastigius cerebelli", - "roof nucleus-1" - ] -} diff --git a/instances/UBERONParcellation/flocculonodularLobe.jsonld b/instances/UBERONParcellation/flocculonodularLobe.jsonld deleted file mode 100644 index c55669394..000000000 --- a/instances/UBERONParcellation/flocculonodularLobe.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/flocculonodularLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Flocculonodular lobe' is a cerebellum lobe. It is part of the vestibulocerebellum.", - "description": "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104286", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003012#flocculonodular-lobe-1", - "name": "flocculonodular lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003012", - "synonym": [ - "Archaeocerebellum", - "archicerebellum", - "cerebellum flocculonodular lobe", - "flocculonodular lobe", - "flocculonodular lobe of cerebellum", - "lobus flocculonodularis", - "posterior lobe-2 of cerebellum", - "vestibulocerebellum" - ] -} diff --git a/instances/UBERONParcellation/flocculonodularLobeHemispherePortion.jsonld b/instances/UBERONParcellation/flocculonodularLobeHemispherePortion.jsonld deleted file mode 100644 index fc369eb67..000000000 --- a/instances/UBERONParcellation/flocculonodularLobeHemispherePortion.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/flocculonodularLobeHemispherePortion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Flocculonodular lobe, hemisphere portion' is a regional part of cerebellar cortex. It is part of the cerebellar hemisphere and flocculonodular lobe.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104947", - "knowledgeSpaceLink": null, - "name": "flocculonodular lobe, hemisphere portion", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027331", - "synonym": null -} diff --git a/instances/UBERONParcellation/flocculus.jsonld b/instances/UBERONParcellation/flocculus.jsonld deleted file mode 100644 index 1339f659d..000000000 --- a/instances/UBERONParcellation/flocculus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/flocculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Flocculus' is a flocculonodular lobe, hemisphere portion.", - "description": "The small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104287", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001063#flocculus-1", - "name": "flocculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001063", - "synonym": [ - "Fl", - "flocculus of cerebellum", - "H X", - "hemispheric lobule X", - "lobule H X of Larsell", - "lobule X", - "lobule X of hemisphere of cerebellum", - "neuraxis flocculus" - ] -} diff --git a/instances/UBERONParcellation/forebrain.jsonld b/instances/UBERONParcellation/forebrain.jsonld deleted file mode 100644 index d3c2c8859..000000000 --- a/instances/UBERONParcellation/forebrain.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/forebrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Forebrain' is a regional part of brain.", - "description": "The part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube and consisting of the DIENCEPHALON and TELENCEPHALON. (MSH) * part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube (brain) from which the diencephalon and telencephalon are derived; also called the forebrain. (CSP), The part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube and consisting of the Diencephalon and Telencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104355", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001890#forebrain-1", - "name": "forebrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001890", - "synonym": [ - "FB", - "prosencephalon" - ] -} diff --git a/instances/UBERONParcellation/forebrainmidbrainBoundary.jsonld b/instances/UBERONParcellation/forebrainmidbrainBoundary.jsonld deleted file mode 100644 index 83d03855e..000000000 --- a/instances/UBERONParcellation/forebrainmidbrainBoundary.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/forebrainmidbrainBoundary", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Forebrain-midbrain boundary' is part of the brain.", - "description": "An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736799", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005075#forebrain-midbrain-boundary", - "name": "forebrain-midbrain boundary", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005075", - "synonym": null -} diff --git a/instances/UBERONParcellation/fornixOfBrain.jsonld b/instances/UBERONParcellation/fornixOfBrain.jsonld deleted file mode 100644 index f8450de53..000000000 --- a/instances/UBERONParcellation/fornixOfBrain.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fornixOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fornix of brain' is a tract of brain. It is part of the hippocampal formation.", - "description": "White matter structure carrying axons connecting the hippocampal formation to other brain regions. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104362", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000052#fornix", - "name": "fornix of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000052", - "synonym": [ - "brain fornix", - "cerebral fornix", - "forebrain fornix", - "fornix", - "fornix (column and body of fornix)", - "fornix cerebri", - "fornix hippocampus", - "fornix of brain", - "fornix of neuraxis", - "hippocampus fornix", - "neuraxis fornix" - ] -} diff --git a/instances/UBERONParcellation/fourthVentricle.jsonld b/instances/UBERONParcellation/fourthVentricle.jsonld deleted file mode 100644 index 9a86a6c52..000000000 --- a/instances/UBERONParcellation/fourthVentricle.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fourth ventricle' is a brain ventricle. It is part of the hindbrain.", - "description": "Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104381", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002422#fourth-ventricle", - "name": "fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002422", - "synonym": [ - "4th ventricle", - "fourth ventricle proper", - "hindbrain ventricle", - "IVth ventricle", - "rhombencephalic ventricle", - "rhombencephalic vesicle", - "ventricle IV", - "ventricle of hindbrain", - "ventricle of rhombencephalon", - "ventriculus quartus" - ] -} diff --git a/instances/UBERONParcellation/fourthVentricleAperture.jsonld b/instances/UBERONParcellation/fourthVentricleAperture.jsonld deleted file mode 100644 index 2b7efe87b..000000000 --- a/instances/UBERONParcellation/fourthVentricleAperture.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fourthVentricleAperture", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fourth ventricle aperture' is part of the fourth ventricle.", - "description": "One of: the 4th ventricle median or lateral apertures.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735066", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004668#fourth-ventricle-aperture", - "name": "fourth ventricle aperture", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004668", - "synonym": null -} diff --git a/instances/UBERONParcellation/fourthVentricleChoroidPlexusEpithelium.jsonld b/instances/UBERONParcellation/fourthVentricleChoroidPlexusEpithelium.jsonld deleted file mode 100644 index ec5926aee..000000000 --- a/instances/UBERONParcellation/fourthVentricleChoroidPlexusEpithelium.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fourthVentricleChoroidPlexusEpithelium", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fourth ventricle choroid plexus epithelium' is a choroid plexus epithelium. It is part of the choroid plexus of fourth ventricle.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728876", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004276#fourth-ventricle-choroid-plexus-epithelium", - "name": "fourth ventricle choroid plexus epithelium", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004276", - "synonym": null -} diff --git a/instances/UBERONParcellation/fourthVentricleChoroidPlexusStroma.jsonld b/instances/UBERONParcellation/fourthVentricleChoroidPlexusStroma.jsonld deleted file mode 100644 index cd01066e3..000000000 --- a/instances/UBERONParcellation/fourthVentricleChoroidPlexusStroma.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fourthVentricleChoroidPlexusStroma", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fourth ventricle choroid plexus stroma' is a choroid plexus stroma. It is part of the choroid plexus of fourth ventricle.", - "description": "A choroid plexus stroma that is part of a fourth ventricle.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726195", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006340#fourth-ventricle-choroid-plexus-stroma", - "name": "fourth ventricle choroid plexus stroma", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006340", - "synonym": null -} diff --git a/instances/UBERONParcellation/fourthVentricleEpendyma.jsonld b/instances/UBERONParcellation/fourthVentricleEpendyma.jsonld deleted file mode 100644 index 189e468bc..000000000 --- a/instances/UBERONParcellation/fourthVentricleEpendyma.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fourthVentricleEpendyma", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fourth ventricle ependyma' is a brain ependyma. It is part of the fourth ventricle.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729148", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004644#fourth-ventricle-ependyma", - "name": "fourth ventricle ependyma", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004644", - "synonym": null -} diff --git a/instances/UBERONParcellation/frontalCortex.jsonld b/instances/UBERONParcellation/frontalCortex.jsonld deleted file mode 100644 index 6ce54dd35..000000000 --- a/instances/UBERONParcellation/frontalCortex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/frontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Frontal cortex' is a cortex of cerebral lobe. It is part of the frontal lobe.", - "description": "Anterior portion of the frontal cortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104449", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001870#frontal-cortex-1", - "name": "frontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001870", - "synonym": [ - "cortex of frontal lobe", - "frontal lobe cortex", - "frontal neocortex", - "gray matter of frontal lobe", - "grey matter of frontal lobe" - ] -} diff --git a/instances/UBERONParcellation/frontalLobe.jsonld b/instances/UBERONParcellation/frontalLobe.jsonld deleted file mode 100644 index 25882d643..000000000 --- a/instances/UBERONParcellation/frontalLobe.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/frontalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Frontal lobe' is a lobe of cerebral hemisphere.", - "description": "The anterior part of the cerebral hemisphere. (MSH)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104451", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016525#frontal-lobe-1", - "name": "frontal lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016525", - "synonym": [ - "frontal cortex", - "frontal region", - "lobi frontales", - "lobus frontalis", - "regio frontalis" - ] -} diff --git a/instances/UBERONParcellation/frontalOperculum.jsonld b/instances/UBERONParcellation/frontalOperculum.jsonld deleted file mode 100644 index ae71270e1..000000000 --- a/instances/UBERONParcellation/frontalOperculum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/frontalOperculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Frontal operculum' is a regional part of brain. It is part of the operculum of brain.", - "description": "Portion of frontal lobe that overlaps the insular cortex (adapted from Wikipedia)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104454", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002947#frontal-operculum-1", - "name": "frontal operculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002947", - "synonym": [ - "inferior frontal gyrus pars opercularis", - "nucleus ventralis oralis", - "operculum frontale", - "pars medialis (Dewulf)" - ] -} diff --git a/instances/UBERONParcellation/frontalPole.jsonld b/instances/UBERONParcellation/frontalPole.jsonld deleted file mode 100644 index 3c00bef61..000000000 --- a/instances/UBERONParcellation/frontalPole.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/frontalPole", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Frontal pole' is a pole of cerebral hemisphere. It is part of the frontal lobe.", - "description": "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively in human (Christine Fennama-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104455", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002795#frontal-pole-1", - "name": "frontal pole", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002795", - "synonym": [ - "polus frontalis" - ] -} diff --git a/instances/UBERONParcellation/frontoorbitalGyrus.jsonld b/instances/UBERONParcellation/frontoorbitalGyrus.jsonld deleted file mode 100644 index 3370d9016..000000000 --- a/instances/UBERONParcellation/frontoorbitalGyrus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/frontoorbitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fronto-orbital gyrus' is an orbital gyrus and frontal gyrus. It is part of the orbitofrontal cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104458", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009836#fronto-orbital-gyrus-1", - "name": "fronto-orbital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009836", - "synonym": [ - "fronto-orbital gyrus", - "gyrus fronto-orbitalis", - "orbito-frontal gyrus", - "orbitofrontal gyrus" - ] -} diff --git a/instances/UBERONParcellation/functionalPartOfBrain.jsonld b/instances/UBERONParcellation/functionalPartOfBrain.jsonld deleted file mode 100644 index 0a2ba51c0..000000000 --- a/instances/UBERONParcellation/functionalPartOfBrain.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/functionalPartOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Functional part of brain' is a regional part of brain.", - "description": "A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104474", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035014#functional-part-of-brain", - "name": "functional part of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035014", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/fundusStriati.jsonld b/instances/UBERONParcellation/fundusStriati.jsonld deleted file mode 100644 index b2a294f18..000000000 --- a/instances/UBERONParcellation/fundusStriati.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fundusStriati", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Fundus striati' is a regional part of brain. It is part of the ventral striatum.", - "description": "The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104480", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014605#fundus-striati-1", - "name": "fundus striati", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014605", - "synonym": [ - "fundus of striatum", - "fundus of the striatum", - "fundus striati", - "striatal fundus" - ] -} diff --git a/instances/UBERONParcellation/fusiformGyrus.jsonld b/instances/UBERONParcellation/fusiformGyrus.jsonld deleted file mode 100644 index 79bc34af9..000000000 --- a/instances/UBERONParcellation/fusiformGyrus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/fusiformGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted].", - "description": "'Fusiform gyrus' is a gyrus. It is part of the temporal lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104491", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002766#fusiform-gyrus-1", - "name": "fusiform gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002766", - "synonym": [ - "gyrus fusiformis", - "gyrus occipito-temporalis lateralis", - "gyrus occipitotemporalis lateralis", - "lateral occipito-temporal gyrus", - "lateral occipitotemporal gyrus", - "medial occipitotemporal gyrus-1 (heimer)", - "occipito-temporal gyrus", - "occipitotemporal gyrus", - "t4" - ] -} diff --git a/instances/UBERONParcellation/futureHindbrainMeninx.jsonld b/instances/UBERONParcellation/futureHindbrainMeninx.jsonld deleted file mode 100644 index 7536b4f75..000000000 --- a/instances/UBERONParcellation/futureHindbrainMeninx.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/futureHindbrainMeninx", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Future hindbrain meninx' is a future meninx. It is part of the hindbrain.", - "description": "A multi-tissue structure that has the potential to develop into a meninx of hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736728", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010091#future-hindbrain-meninx", - "name": "future hindbrain meninx", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010091", - "synonym": null -} diff --git a/instances/UBERONParcellation/futureMetencephalon.jsonld b/instances/UBERONParcellation/futureMetencephalon.jsonld deleted file mode 100644 index 057fa5208..000000000 --- a/instances/UBERONParcellation/futureMetencephalon.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/futureMetencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Future metencephalon' is part of the hindbrain.", - "description": "A developing anatomical structure that has the potential to develop into a metencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735157", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010092#future-metencephalon", - "name": "future metencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010092", - "synonym": null -} diff --git a/instances/UBERONParcellation/futureMyelencephalon.jsonld b/instances/UBERONParcellation/futureMyelencephalon.jsonld deleted file mode 100644 index ed451e33a..000000000 --- a/instances/UBERONParcellation/futureMyelencephalon.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/futureMyelencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Future myelencephalon' is part of the hindbrain.", - "description": "A developing anatomical structure that has the potential to develop into a myelencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727209", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010096#future-myelencephalon", - "name": "future myelencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010096", - "synonym": null -} diff --git a/instances/UBERONParcellation/genuOfCorpusCallosum.jsonld b/instances/UBERONParcellation/genuOfCorpusCallosum.jsonld deleted file mode 100644 index 840afafc4..000000000 --- a/instances/UBERONParcellation/genuOfCorpusCallosum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/genuOfCorpusCallosum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Genu of corpus callosum' is a regional part of brain. It is part of the corpus callosum.", - "description": "Part of corpus callosum comprising the \"kneelike\" anterior bend (adapted from Nolte, The Human Brain, 6th ed., 2009 pg 664)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104608", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015599#genu-of-corpus-callosum", - "name": "genu of corpus callosum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015599", - "synonym": [ - "corpus callosum", - "corpus callosum genu", - "genu", - "genu corporis callosi", - "genu corpus callosi", - "genu of corpus callosum", - "genu of the corpus callosum", - "rostrum of corpus callosum (Mai)" - ] -} diff --git a/instances/UBERONParcellation/globusPallidus.jsonld b/instances/UBERONParcellation/globusPallidus.jsonld deleted file mode 100644 index c25743e67..000000000 --- a/instances/UBERONParcellation/globusPallidus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/globusPallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Globus pallidus' is a telencephalic nucleus. It is part of the cerebral hemisphere and pallidum.", - "description": "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104657", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001875#globus-pallidus-1", - "name": "globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001875", - "synonym": [ - "globus pallidus (Burdach)", - "GP", - "nucleus pallidus", - "Pale Body", - "paleostriatum", - "pallidium", - "pallidum" - ] -} diff --git a/instances/UBERONParcellation/glossopharyngealNerveFiberBundle.jsonld b/instances/UBERONParcellation/glossopharyngealNerveFiberBundle.jsonld deleted file mode 100644 index d69ca76c6..000000000 --- a/instances/UBERONParcellation/glossopharyngealNerveFiberBundle.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/glossopharyngealNerveFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Glossopharyngeal nerve fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104666", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006090#glossopharyngeal-nerve-fiber-bundle-1", - "name": "glossopharyngeal nerve fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006090", - "synonym": [ - "central part of glossopharyngeal nerve", - "fibrae nervi glossopharyngei", - "glossopharyngeal nerve fiber bundle", - "glossopharyngeal nerve fibers", - "glossopharyngeal nerve tract", - "ninth cranial nerve fibers" - ] -} diff --git a/instances/UBERONParcellation/glossopharyngealNerveRoot.jsonld b/instances/UBERONParcellation/glossopharyngealNerveRoot.jsonld deleted file mode 100644 index 807a55db1..000000000 --- a/instances/UBERONParcellation/glossopharyngealNerveRoot.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/glossopharyngealNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Glossopharyngeal nerve root' is a root of cranial nerve. It is part of the medulla oblongata.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736855", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019310#glossopharyngeal-nerve-root-1", - "name": "glossopharyngeal nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019310", - "synonym": null -} diff --git a/instances/UBERONParcellation/gracileFasciculus.jsonld b/instances/UBERONParcellation/gracileFasciculus.jsonld deleted file mode 100644 index 862cb63f0..000000000 --- a/instances/UBERONParcellation/gracileFasciculus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/gracileFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Gracile fasciculus' is a nerve fasciculus and central nervous system cell part cluster. It is part of the white matter and dorsal column-medial lemniscus pathway.", - "description": "Axon bundle arising largely from the dorsal root ganglia of the lower spinal cord, ascending in humans in the dorsal funiculus, synapsing within the nucleus gracilis of the lower medulla.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104726", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005821#gracile-fasciculus", - "name": "gracile fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005821", - "synonym": [ - "f. gracilis medullae spinalis", - "fasciculus gracilis", - "GF", - "Gl9 gracile fasciculus", - "gr", - "gracile column", - "gracile fascicle", - "gracile fasciculus (paxspn)", - "gracile tract", - "gracilis tract", - "tract of Goll" - ] -} diff --git a/instances/UBERONParcellation/gracileFasciculusOfMedulla.jsonld b/instances/UBERONParcellation/gracileFasciculusOfMedulla.jsonld deleted file mode 100644 index b6f8f8dad..000000000 --- a/instances/UBERONParcellation/gracileFasciculusOfMedulla.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/gracileFasciculusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Gracile fasciculus of medulla' is a gracile fasciculus and fasciculus of brain. It is part of the medulla oblongata.", - "description": "Part of gracile fasiculus located in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104727", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002653#gracile-fasciculus-of-medulla-1", - "name": "gracile fasciculus of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002653", - "synonym": [ - "Column of Goll", - "fasciculus dorsolateralis gracilis (Golli)", - "fasciculus gracilis (myelencephali)", - "Fasciculus of Goll", - "Goll's tract", - "gracile fascicle (Gall)", - "gracile fascicle (Goll)", - "gracile fascicle of medulla", - "gracile fasciculus of the medulla", - "medulla segment of fasciculus gracilis", - "medulla segment of gracile fasciculus", - "Tract of Gall" - ] -} diff --git a/instances/UBERONParcellation/grayMatterOfHindbrain.jsonld b/instances/UBERONParcellation/grayMatterOfHindbrain.jsonld deleted file mode 100644 index 2529e278a..000000000 --- a/instances/UBERONParcellation/grayMatterOfHindbrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/grayMatterOfHindbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Gray matter of hindbrain' is a brain gray matter. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724553", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019263#gray-matter-of-hindbrain", - "name": "gray matter of hindbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019263", - "synonym": null -} diff --git a/instances/UBERONParcellation/grossAnatomicalPartsOfTheCerebellum.jsonld b/instances/UBERONParcellation/grossAnatomicalPartsOfTheCerebellum.jsonld deleted file mode 100644 index 76f0dc098..000000000 --- a/instances/UBERONParcellation/grossAnatomicalPartsOfTheCerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/grossAnatomicalPartsOfTheCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Gross anatomical parts of the cerebellum' is a regional part of brain. It is part of the cerebellum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104796", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023836#gross-anatomical-parts-of-the-cerebellum-1", - "name": "gross anatomical parts of the cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023836", - "synonym": null -} diff --git a/instances/UBERONParcellation/gyrusRectus.jsonld b/instances/UBERONParcellation/gyrusRectus.jsonld deleted file mode 100644 index d6ab760ed..000000000 --- a/instances/UBERONParcellation/gyrusRectus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/gyrusRectus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Gyrus rectus' is a gyrus. It is part of the frontal lobe.", - "description": "The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104846", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004671#gyrus-rectus-1", - "name": "gyrus rectus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004671", - "synonym": [ - "gyrus rectus", - "medial part of gyri orbitales", - "rectal gyrus", - "rectus gyrus", - "RG", - "straight gyrus", - "ventromedial gyrus" - ] -} diff --git a/instances/UBERONParcellation/habenula.jsonld b/instances/UBERONParcellation/habenula.jsonld deleted file mode 100644 index 3209461ad..000000000 --- a/instances/UBERONParcellation/habenula.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/habenula", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Habenula' is a regional part of brain. It is part of the epithalamus.", - "description": "Habenula is a segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104854", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001904#habenula-1", - "name": "habenula", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001904", - "synonym": [ - "ganglion intercrurale", - "ganglion interpedunculare", - "habenula complex", - "habenulae", - "habenular complex", - "habenular nuclei", - "habenular nucleus", - "Hb", - "nuclei habenulares", - "nucleus habenularis", - "pineal peduncle" - ] -} diff --git a/instances/UBERONParcellation/habenularCommissure.jsonld b/instances/UBERONParcellation/habenularCommissure.jsonld deleted file mode 100644 index 20aff7e49..000000000 --- a/instances/UBERONParcellation/habenularCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/habenularCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Habenular commissure' is a ventral commissure, commissure of diencephalon and thalamic fiber tract. It is part of the habenula and diencephalic white matter.", - "description": "A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104855", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001909#habenular-commissure-1", - "name": "habenular commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001909", - "synonym": null -} diff --git a/instances/UBERONParcellation/habenulointerpeduncularTractOfDiencephalon.jsonld b/instances/UBERONParcellation/habenulointerpeduncularTractOfDiencephalon.jsonld deleted file mode 100644 index f63ef801f..000000000 --- a/instances/UBERONParcellation/habenulointerpeduncularTractOfDiencephalon.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/habenulointerpeduncularTractOfDiencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Habenulo-interpeduncular tract of diencephalon' is a fasciculus of brain. It is part of the habenulo-interpeduncular tract and diencephalic white matter.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104856", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022649#habenulo-interpeduncular-tract-of-diencephalon-1", - "name": "habenulo-interpeduncular tract of diencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022649", - "synonym": [ - "habenulo-interpeduncular tract of diencephalon" - ] -} diff --git a/instances/UBERONParcellation/habenulointerpeduncularTractOfMidbrain.jsonld b/instances/UBERONParcellation/habenulointerpeduncularTractOfMidbrain.jsonld deleted file mode 100644 index 289f57d3f..000000000 --- a/instances/UBERONParcellation/habenulointerpeduncularTractOfMidbrain.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/habenulointerpeduncularTractOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Habenulo-interpeduncular tract of midbrain' is a fasciculus of brain. It is part of the midbrain tegmentum, habenulo-interpeduncular tract and white matter of midbrain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104857", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023740#habenulo-interpeduncular-tract-of-midbrain-1", - "name": "habenulo-interpeduncular tract of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023740", - "synonym": [ - "habenulo-interpeduncular tract of midbrain", - "hipm" - ] -} diff --git a/instances/UBERONParcellation/headOfCaudateNucleus.jsonld b/instances/UBERONParcellation/headOfCaudateNucleus.jsonld deleted file mode 100644 index 48b634b70..000000000 --- a/instances/UBERONParcellation/headOfCaudateNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/headOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Head of caudate nucleus' is a gray matter of telencephalon. It is part of the caudate nucleus.", - "description": "Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104911", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002626#head-of-caudate-nucleus-1", - "name": "head of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002626", - "synonym": [ - "caput (caudatus)", - "caput nuclei caudati", - "caudate nuclear head", - "head of the caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/hilumOfDentateNucleus.jsonld b/instances/UBERONParcellation/hilumOfDentateNucleus.jsonld deleted file mode 100644 index be102adc6..000000000 --- a/instances/UBERONParcellation/hilumOfDentateNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hilumOfDentateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hilum of dentate nucleus' is a hilum of neuraxis. It is part of the dentate nucleus.", - "description": "The mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105003", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002744#hilum-of-dentate-nucleus-1", - "name": "hilum of dentate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002744", - "synonym": [ - "dentate nuclear hilum", - "hdt", - "hilum nuclei dentati", - "hilum of the dentate nucleus" - ] -} diff --git a/instances/UBERONParcellation/hilusOfDentateGyrus.jsonld b/instances/UBERONParcellation/hilusOfDentateGyrus.jsonld deleted file mode 100644 index 2b297be24..000000000 --- a/instances/UBERONParcellation/hilusOfDentateGyrus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hilusOfDentateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hilus of dentate gyrus' is a cerebral hemisphere gray matter. It is part of the dentate gyrus of hippocampal formation.", - "description": "Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103062", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002136#hilus-of-dentate-gyrus-1", - "name": "hilus of dentate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002136", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrain.jsonld b/instances/UBERONParcellation/hindbrain.jsonld deleted file mode 100644 index dd0b5b88e..000000000 --- a/instances/UBERONParcellation/hindbrain.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain' is a regional part of brain.", - "description": "Part of the brainconstituting the MEDULLA OBLONGATA (myelencephalon) and PONS (metencephalon). (adapted from MSH) * part of the brain developed from the posterior of the three primary brain vesicles of the embryonic neural tube; it comprises the metencephalon (cerebellum and pons) and myelencephalon (medulla oblongata). (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105004", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002028#hindbrain-1", - "name": "hindbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002028", - "synonym": [ - "rhombencephalon" - ] -} diff --git a/instances/UBERONParcellation/hindbrainCommissure.jsonld b/instances/UBERONParcellation/hindbrainCommissure.jsonld deleted file mode 100644 index 6886e5111..000000000 --- a/instances/UBERONParcellation/hindbrainCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain commissure' is a brain commissure. It is part of the hindbrain.", - "description": "Any commissure within the hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732568", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034763#hindbrain-commissure", - "name": "hindbrain commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034763", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrainCorticalIntermediateZone.jsonld b/instances/UBERONParcellation/hindbrainCorticalIntermediateZone.jsonld deleted file mode 100644 index ab49f2bd7..000000000 --- a/instances/UBERONParcellation/hindbrainCorticalIntermediateZone.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainCorticalIntermediateZone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain cortical intermediate zone' is a cortical intermediate zone. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733012", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034994#hindbrain-cortical-intermediate-zone", - "name": "hindbrain cortical intermediate zone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034994", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrainMarginalLayer.jsonld b/instances/UBERONParcellation/hindbrainMarginalLayer.jsonld deleted file mode 100644 index 08ce4da7c..000000000 --- a/instances/UBERONParcellation/hindbrainMarginalLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainMarginalLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain marginal layer' is a central nervous system cell part cluster. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733117", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034709#hindbrain-marginal-layer", - "name": "hindbrain marginal layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034709", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrainNucleus.jsonld b/instances/UBERONParcellation/hindbrainNucleus.jsonld deleted file mode 100644 index bb9af007a..000000000 --- a/instances/UBERONParcellation/hindbrainNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain nucleus' is a nucleus of brain. It is part of the hindbrain.", - "description": "Nucleus located within the hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733158", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009662#hindbrain-nucleus", - "name": "hindbrain nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009662", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrainSubarachnoidSpace.jsonld b/instances/UBERONParcellation/hindbrainSubarachnoidSpace.jsonld deleted file mode 100644 index 4e166d143..000000000 --- a/instances/UBERONParcellation/hindbrainSubarachnoidSpace.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainSubarachnoidSpace", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain subarachnoid space' is a subarachnoid space. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726998", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005219#hindbrain-subarachnoid-space", - "name": "hindbrain subarachnoid space", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005219", - "synonym": null -} diff --git a/instances/UBERONParcellation/hindbrainVenousSystem.jsonld b/instances/UBERONParcellation/hindbrainVenousSystem.jsonld deleted file mode 100644 index ac95f4c76..000000000 --- a/instances/UBERONParcellation/hindbrainVenousSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hindbrainVenousSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hindbrain venous system' is part of the hindbrain.", - "description": "A venous system that is part of a hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735731", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005720#hindbrain-venous-system", - "name": "hindbrain venous system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005720", - "synonym": null -} diff --git a/instances/UBERONParcellation/hippocampalCommissure.jsonld b/instances/UBERONParcellation/hippocampalCommissure.jsonld deleted file mode 100644 index c5cafe005..000000000 --- a/instances/UBERONParcellation/hippocampalCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hippocampalCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hippocampal commissure' is a dorsal telencephalic commissure. It is part of the cerebral hemisphere white matter.", - "description": "The triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102407", - "knowledgeSpaceLink": null, - "name": "hippocampal commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000908", - "synonym": null -} diff --git a/instances/UBERONParcellation/hippocampalFormation.jsonld b/instances/UBERONParcellation/hippocampalFormation.jsonld deleted file mode 100644 index e4fbe456b..000000000 --- a/instances/UBERONParcellation/hippocampalFormation.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hippocampalFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hippocampal formation' is a regional part of brain. It is part of the cerebral cortex.", - "description": "A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampal formation is often used synonymously with hippocampus which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subicular complex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105009", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002421#hippocampal-formation", - "name": "hippocampal formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002421", - "synonym": [ - "archipallium", - "formatio hippocampi", - "hippocampus", - "hippocampus (Crosby)", - "major hippocampus", - "primal cortex", - "seahorse" - ] -} diff --git a/instances/UBERONParcellation/hippocampusAlveus.jsonld b/instances/UBERONParcellation/hippocampusAlveus.jsonld deleted file mode 100644 index cb5a165d0..000000000 --- a/instances/UBERONParcellation/hippocampusAlveus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hippocampusAlveus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hippocampus alveus' is a central nervous system cell part cluster and central nervous system white matter layer. It is part of the hippocampal formation.", - "description": "Layer of white matter in hippocampus lying just deep to the stratum oriens layer, continuous with the fimbria of the hippocampus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100522", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007639#alveus", - "name": "hippocampus alveus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007639", - "synonym": [ - "alveus", - "alveus hippocampi", - "alveus of fornix", - "alveus of hippocampus", - "alveus of the hippocampus", - "CA2 alveus", - "neuraxis alveus" - ] -} diff --git a/instances/UBERONParcellation/hippocampusFimbria.jsonld b/instances/UBERONParcellation/hippocampusFimbria.jsonld deleted file mode 100644 index 5005f18fd..000000000 --- a/instances/UBERONParcellation/hippocampusFimbria.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hippocampusFimbria", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hippocampus fimbria' is a central nervous system cell part cluster. It is part of the fornix of brain, Ammon's horn and white matter of telencephalon.", - "description": "Part of fornix lying closest to the hippocampal formation continuos with the alveus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104243", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002310#fimbria-of-hippocampus", - "name": "hippocampus fimbria", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002310", - "synonym": [ - "fimbria", - "fimbria (Vieussens)", - "fimbria fornicis", - "fimbria hippocampi", - "fimbria hippocampus", - "fimbria of fornix", - "fimbria of hippocampus", - "fimbria of the fornix", - "fimbria of the hippocampus", - "fimbria-fornix", - "hippocampal fimbria", - "neuraxis fimbria" - ] -} diff --git a/instances/UBERONParcellation/horizontalLimbOfTheDiagonalBand.jsonld b/instances/UBERONParcellation/horizontalLimbOfTheDiagonalBand.jsonld deleted file mode 100644 index 182f9347d..000000000 --- a/instances/UBERONParcellation/horizontalLimbOfTheDiagonalBand.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/horizontalLimbOfTheDiagonalBand", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Horizontal limb of the diagonal band' is a subdivision of diagonal band.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105108", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006123#horizontal-limb-of-the-diagonal-band-1", - "name": "horizontal limb of the diagonal band", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006123", - "synonym": [ - "crus horizontale striae diagonalis", - "diagonal band horizontal limb", - "hDBB", - "horizontal limb of diagonal band", - "horizontal limb of the diagonal band", - "Horizontal limb of the diagonal band of Broca", - "nucleus of the horizontal limb of the diagonal band" - ] -} diff --git a/instances/UBERONParcellation/hypoglossalNerveRoot.jsonld b/instances/UBERONParcellation/hypoglossalNerveRoot.jsonld deleted file mode 100644 index 776597c1c..000000000 --- a/instances/UBERONParcellation/hypoglossalNerveRoot.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hypoglossalNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hypoglossal nerve root' is a root of cranial nerve. It is part of the medulla oblongata.", - "description": "A nerve root that extends_fibers_into a hypoglossal nerve.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105166", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004675#hypoglossal-nerve-fiber-bundle", - "name": "hypoglossal nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004675", - "synonym": [ - "central part of hypoglossal nerve", - "fibrae nervi hypoglossi", - "hypoglossal nerve fiber bundle", - "hypoglossal nerve fibers", - "hypoglossal nerve root", - "hypoglossal nerve tract", - "hypoglossal nerve/ root", - "root of hypoglossal nerve" - ] -} diff --git a/instances/UBERONParcellation/hypothalamus.jsonld b/instances/UBERONParcellation/hypothalamus.jsonld deleted file mode 100644 index ad9e67bcd..000000000 --- a/instances/UBERONParcellation/hypothalamus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/hypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Hypothalamus' is a regional part of brain. It is part of the limbic system and thalamic complex.", - "description": "Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle.The ventral topographic division of the interbrain. The first adequate description of the hypothalamus as a layer of gray matter surrounding the lower half of the third ventricle (Galen, c173) was provided by Wharton (1656, see 1966 translation, p. 170). His (1893, pp. 159-162) introduced the term but assigned the preoptic region (Swanson, 1976, pp. 229-235) of the hypothalamus to the telencephalon (His, 1893b). The definition here was introduced for vertebrates by Kuhlenbeck (1927, p. 67, Ch. 9).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105177", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001898#hypothalamus-1", - "name": "hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001898", - "synonym": [ - "Hy", - "Hypencephalon", - "Preoptico-hypothalamic area", - "Preoptico-hypothalamic region", - "hypothalamus" - ] -} diff --git a/instances/UBERONParcellation/induseumGriseum.jsonld b/instances/UBERONParcellation/induseumGriseum.jsonld deleted file mode 100644 index 8f08282ea..000000000 --- a/instances/UBERONParcellation/induseumGriseum.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/induseumGriseum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Induseum griseum' is a white matter of limbic lobe and stria of telencephalon. It is part of the hippocampal formation and supracallosal gyrus.", - "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105421", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015793#induseum-griseum", - "name": "induseum griseum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015793", - "synonym": [ - "dorsal hippocampal continuation", - "gray stria of Lancisi", - "gyrus epicallosus", - "gyrus indusium griseum", - "IG", - "indusium griseum", - "superior part of intralimbic gyrus", - "superior segment of intralimbic gyrus", - "supracallosal gyrus", - "supracommissural hippocampus" - ] -} diff --git a/instances/UBERONParcellation/inferiorCentralNucleus.jsonld b/instances/UBERONParcellation/inferiorCentralNucleus.jsonld deleted file mode 100644 index 43708b2ce..000000000 --- a/instances/UBERONParcellation/inferiorCentralNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorCentralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior central nucleus' is a nucleus of pontine reticular formation.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105434", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002993#inferior-central-nucleus-1", - "name": "inferior central nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002993", - "synonym": [ - "Inferior central nucleus (of Roller)", - "inferior central nucleus of raphe", - "inferior central tegmental nucleus", - "nucleus centralis inferior", - "nucleus tegmentalis centralis inferior" - ] -} diff --git a/instances/UBERONParcellation/inferiorCerebellarPeduncle.jsonld b/instances/UBERONParcellation/inferiorCerebellarPeduncle.jsonld deleted file mode 100644 index adba6b6d2..000000000 --- a/instances/UBERONParcellation/inferiorCerebellarPeduncle.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorCerebellarPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior cerebellar peduncle' is a cerebellar peduncle and white matter of medulla oblongata.", - "description": "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105435", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002163#inferior-cerebellar-peduncle-1", - "name": "inferior cerebellar peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002163", - "synonym": [ - "corpus restiforme", - "crus cerebelli ad medullam oblongatam", - "crus medullo-cerebellare", - "icp", - "inferior cerebellar peduncle (restiform body)", - "inferior cerebellar peduncle (Ridley)", - "inferior peduncle", - "pedunculus cerebellaris caudalis", - "pedunculus cerebellaris inferior", - "restiform body" - ] -} diff --git a/instances/UBERONParcellation/inferiorColliculus.jsonld b/instances/UBERONParcellation/inferiorColliculus.jsonld deleted file mode 100644 index 4cbffa069..000000000 --- a/instances/UBERONParcellation/inferiorColliculus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior colliculus' is a regional part of brain. It is part of the corpora quadrigemina.", - "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105436", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001946#inferior-colliculus-1", - "name": "inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001946", - "synonym": [ - "caudal colliculus", - "colliculus caudalis", - "colliculus inferior", - "corpus bigeminalis caudalis", - "corpus bigeminum posterioris", - "corpus quadrigeminum inferius", - "IC", - "inferior colliculi", - "posterior colliculus", - "posterior corpus quadrigeminum" - ] -} diff --git a/instances/UBERONParcellation/inferiorFrontalGyrus.jsonld b/instances/UBERONParcellation/inferiorFrontalGyrus.jsonld deleted file mode 100644 index 4c5c808a4..000000000 --- a/instances/UBERONParcellation/inferiorFrontalGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior frontal gyrus' is a frontal gyrus.", - "description": "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105442", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002998#inferior-frontal-gyrus-1", - "name": "inferior frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002998", - "synonym": [ - "gyrus F3", - "gyrus frontalis inferior", - "gyrus frontalis tertius", - "IFG", - "inferior frontal convolution", - "regio subfrontalis" - ] -} diff --git a/instances/UBERONParcellation/inferiorHornOfTheLateralVentricle.jsonld b/instances/UBERONParcellation/inferiorHornOfTheLateralVentricle.jsonld deleted file mode 100644 index 701bc430c..000000000 --- a/instances/UBERONParcellation/inferiorHornOfTheLateralVentricle.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorHornOfTheLateralVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior horn of the lateral ventricle' is part of the telencephalic ventricle.", - "description": "The part of the lateral ventricle extending downward and anteriorly in the temporal lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105444", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006091#inferior-horn-of-the-lateral-ventricle-1", - "name": "inferior horn of the lateral ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006091", - "synonym": [ - "cornu inferius", - "cornu inferius (ventriculi lateralis)", - "cornu inferius ventriculi lateralis", - "cornu temporale", - "cornu temporale (ventriculi lateralis)", - "cornu temporale ventriculi lateralis", - "inferior horn of lateral ventricle", - "inferior horn of the lateral ventricle", - "temporal horn of lateral ventricle", - "ventriculus lateralis" - ] -} diff --git a/instances/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld b/instances/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld deleted file mode 100644 index cb8fcbc76..000000000 --- a/instances/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorLongitudinalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'inferior longitudinal fasciculus' is a white matter fibre bundle. It is a cerebral nerve fasciculus, connecting the temporal and occipital lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724061", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034743#inferior-longitudinal-fasciculus", - "name": "inferior longitudinal fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034743", - "synonym": [ - "external sagittal stratum", - "fasciculus longitudinalis inferior", - "ilf" - ] -} diff --git a/instances/UBERONParcellation/inferiorOccipitalGyrus.jsonld b/instances/UBERONParcellation/inferiorOccipitalGyrus.jsonld deleted file mode 100644 index bde2e3e73..000000000 --- a/instances/UBERONParcellation/inferiorOccipitalGyrus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorOccipitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior occipital gyrus' is an occipital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105446", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014608#inferior-occipital-gyrus-1", - "name": "inferior occipital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014608", - "synonym": [ - "gyrus occipitalis inferior", - "gyrus occipitalis tertius", - "inferior occipital gyrus" - ] -} diff --git a/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld b/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld deleted file mode 100644 index 1b18c458a..000000000 --- a/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'inferior occipitofrontal fasciculus' is a white matter fibre bundle. It is the inferior part of the occipitofrontal fasciculus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731728", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034753#inferior-occipitofrontal-fasciculus", - "name": "inferior occipitofrontal fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034753", - "synonym": [ - "fasciculus occipito-frontalis inferior", - "fasciculus occipitofrontalis inferior", - "inferior fronto-occipital fasciculus" - ] -} diff --git a/instances/UBERONParcellation/inferiorOlivaryComplex.jsonld b/instances/UBERONParcellation/inferiorOlivaryComplex.jsonld deleted file mode 100644 index 83ac42775..000000000 --- a/instances/UBERONParcellation/inferiorOlivaryComplex.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorOlivaryComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the olivary body.", - "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105448", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002127#inferior-olivary-complex-1", - "name": "inferior olivary complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002127", - "synonym": [ - "caudal olivary nuclei", - "complexus olivaris inferior", - "complexus olivaris inferior; nuclei olivares inferiores", - "inferior olivary complex (Vieussens)", - "inferior olivary nuclear complex", - "inferior olivary nuclei", - "inferior olivary nucleus", - "inferior olive", - "nuclei olivares caudales", - "nuclei olivares inferiores", - "nucleus olivaris caudalis", - "nucleus olivaris inferior", - "oliva", - "regio olivaris inferior" - ] -} diff --git a/instances/UBERONParcellation/inferiorParietalCortex.jsonld b/instances/UBERONParcellation/inferiorParietalCortex.jsonld deleted file mode 100644 index 1412b9532..000000000 --- a/instances/UBERONParcellation/inferiorParietalCortex.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorParietalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior parietal cortex' is part of the parietal lobe.", - "description": "Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105452", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006088#inferior-parietal-cortex-1", - "name": "inferior parietal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006088", - "synonym": [ - "inferior parietal cortex", - "inferior parietal gyrus", - "inferior parietal lobule", - "inferior portion of parietal gyrus", - "lobulus parietalis inferior", - "subparietal district", - "subparietal lobule" - ] -} diff --git a/instances/UBERONParcellation/inferiorRostralGyrus.jsonld b/instances/UBERONParcellation/inferiorRostralGyrus.jsonld deleted file mode 100644 index 5f58a9ec0..000000000 --- a/instances/UBERONParcellation/inferiorRostralGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorRostralGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior rostral gyrus' is a regional part of brain. It is part of the rostral gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105460", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019278#inferior-rostral-gyrus-1", - "name": "inferior rostral gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019278", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/inferiorTemporalGyrus.jsonld b/instances/UBERONParcellation/inferiorTemporalGyrus.jsonld deleted file mode 100644 index 6570d7c5b..000000000 --- a/instances/UBERONParcellation/inferiorTemporalGyrus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorTemporalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior temporal gyrus' is a gyrus. It is part of the temporal lobe.", - "description": "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105463", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002751#inferior-temporal-gyrus-1", - "name": "inferior temporal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002751", - "synonym": [ - "gyrus temporalis inferior", - "inferotemporal cortex", - "IT cortex", - "lateral occipitotemporal gyrus (heimer-83)" - ] -} diff --git a/instances/UBERONParcellation/inferiorTransverseFrontopolarGyrus.jsonld b/instances/UBERONParcellation/inferiorTransverseFrontopolarGyrus.jsonld deleted file mode 100644 index e5ca46d29..000000000 --- a/instances/UBERONParcellation/inferiorTransverseFrontopolarGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorTransverseFrontopolarGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior transverse frontopolar gyrus' is a regional part of brain. It is part of the transverse frontopolar gyri complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105465", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024183#inferior-transverse-frontopolar-gyrus-1", - "name": "inferior transverse frontopolar gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024183", - "synonym": [ - "inferior transverse frontopolar gyrus" - ] -} diff --git a/instances/UBERONParcellation/inferiorVestibularNucleus.jsonld b/instances/UBERONParcellation/inferiorVestibularNucleus.jsonld deleted file mode 100644 index fde99a7b3..000000000 --- a/instances/UBERONParcellation/inferiorVestibularNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/inferiorVestibularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Inferior vestibular nucleus' is a vestibular nucleus.", - "description": "One of the nuclei comprising the vestibular nuclear complex, characterized by bundles of longitudinal fibers running through it. Multiple cell groups are often identified within it.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105466", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001721#inferior-vestibular-nucleus", - "name": "inferior vestibular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001721", - "synonym": [ - "descending vestibular nucleus", - "nucleus vestibularis inferior", - "spinal vestibular nucleus" - ] -} diff --git a/instances/UBERONParcellation/insectProtocerebrum.jsonld b/instances/UBERONParcellation/insectProtocerebrum.jsonld deleted file mode 100644 index 48211576f..000000000 --- a/instances/UBERONParcellation/insectProtocerebrum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/insectProtocerebrum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Insect protocerebrum' is a segmental subdivision of nervous system. It is part of the insect supraesophageal ganglion.", - "description": "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726810", - "knowledgeSpaceLink": null, - "name": "insect protocerebrum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_6003627", - "synonym": null -} diff --git a/instances/UBERONParcellation/insectSupraesophagealGanglion.jsonld b/instances/UBERONParcellation/insectSupraesophagealGanglion.jsonld deleted file mode 100644 index 86d1e5597..000000000 --- a/instances/UBERONParcellation/insectSupraesophagealGanglion.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/insectSupraesophagealGanglion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Insect supraesophageal ganglion' is a ganglion of central nervous system. It is part of the brain.", - "description": "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735712", - "knowledgeSpaceLink": null, - "name": "insect supraesophageal ganglion", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_6003626", - "synonym": null -} diff --git a/instances/UBERONParcellation/insula.jsonld b/instances/UBERONParcellation/insula.jsonld deleted file mode 100644 index 9119540fe..000000000 --- a/instances/UBERONParcellation/insula.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/insula", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16.", - "description": "'Insula' is a cerebral hemisphere gray matter. It is part of the cerebral cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105519", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002022#insula-1", - "name": "insula", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002022", - "synonym": [ - "central lobe", - "cortex insularis", - "cortex of island", - "iNS", - "insula cerebri", - "insula lobule", - "insula of Reil", - "insula Reilii", - "insular cortex", - "insular gyrus", - "insular lobe", - "insular region", - "insulary cortex", - "island of Reil", - "lobus insularis", - "morphological insula" - ] -} diff --git a/instances/UBERONParcellation/interanterodorsalNucleusOfTheThalamus.jsonld b/instances/UBERONParcellation/interanterodorsalNucleusOfTheThalamus.jsonld deleted file mode 100644 index f2e7c4846..000000000 --- a/instances/UBERONParcellation/interanterodorsalNucleusOfTheThalamus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interanterodorsalNucleusOfTheThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interanterodorsal nucleus of the thalamus' is a regional part of brain. It is part of the anterior nuclear group.", - "description": "A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105539", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035972#interanterodorsal-nucleus-of-the-thalamus", - "name": "interanterodorsal nucleus of the thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035972", - "synonym": [ - "IAD", - "interanterodorsal nucleus of thalamus", - "interanterodorsal nucleus of the thalamus", - "interanterodorsal nucleus thalamus", - "interanterodorsal thalamic nucleus", - "nucleus commissura interanterodorsalis", - "nucleus interanterodorsalis" - ] -} diff --git a/instances/UBERONParcellation/intercalatedAmygdaloidNuclei.jsonld b/instances/UBERONParcellation/intercalatedAmygdaloidNuclei.jsonld deleted file mode 100644 index 109982ed4..000000000 --- a/instances/UBERONParcellation/intercalatedAmygdaloidNuclei.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intercalatedAmygdaloidNuclei", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intercalated amygdaloid nuclei' is a telencephalic nucleus. It is part of the amygdala.", - "description": "Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105544", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002884#intercalated-amygdaloid-nuclei-1", - "name": "intercalated amygdaloid nuclei", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002884", - "synonym": [ - "intercalated amygdalar nuclei", - "intercalated amygdalar nucleus", - "intercalated amygdaloid nuclei", - "intercalated amygdaloid nucleus", - "intercalated cell islands", - "intercalated masses", - "intercalated masses of nucleus amygdaloideus", - "intercalated nuclei amygdala", - "intercalated nuclei of amygdala", - "intercalated nuclei of the amygdala", - "intercalated nucleus of the amygdala", - "massa intercalata", - "massa intercalata of amygdala", - "nucleus amygdalae intercalatus", - "nucleus intercalatus amygdalae" - ] -} diff --git a/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld b/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld deleted file mode 100644 index 9a163eb6f..000000000 --- a/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intergeniculate leaflet of the lateral geniculate complex' is a regional part of brain. It is part of the lateral geniculate body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105563", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035975#intergeniculate-leaflet-of-the-lateral-geniculate-complex", - "name": "intergeniculate leaflet of the lateral geniculate complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035975", - "synonym": [ - "IGL", - "intergeniculate leaflet", - "intergeniculate leaflet of the lateral geniculate complex", - "lateral geniculate complex" - ] -} diff --git a/instances/UBERONParcellation/intermediateAcousticStria.jsonld b/instances/UBERONParcellation/intermediateAcousticStria.jsonld deleted file mode 100644 index dba96aca5..000000000 --- a/instances/UBERONParcellation/intermediateAcousticStria.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateAcousticStria", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105568", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002952#intermediate-acoustic-stria-1", - "name": "intermediate acoustic stria", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002952", - "synonym": [ - "commissure of Held", - "intermediate acoustic stria (Held)", - "Intermediate acoustic stria of Held", - "striae acusticae intermedius" - ] -} diff --git a/instances/UBERONParcellation/intermediateHypothalamicRegion.jsonld b/instances/UBERONParcellation/intermediateHypothalamicRegion.jsonld deleted file mode 100644 index 9d0a3de33..000000000 --- a/instances/UBERONParcellation/intermediateHypothalamicRegion.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateHypothalamicRegion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105570", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002555#intermediate-hypothalamic-region-1", - "name": "intermediate hypothalamic region", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002555", - "synonym": [ - "area hypothalamica intermedia", - "IHR", - "intermediate hypothalamic area", - "intermediate hypothalamus", - "medial hypothalamus", - "middle hypothalamus", - "regio hypothalamica intermedia" - ] -} diff --git a/instances/UBERONParcellation/intermediateOculomotorNucleus.jsonld b/instances/UBERONParcellation/intermediateOculomotorNucleus.jsonld deleted file mode 100644 index 54b72f5d3..000000000 --- a/instances/UBERONParcellation/intermediateOculomotorNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105573", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002970#intermediate-oculomotor-nucleus-1", - "name": "intermediate oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002970", - "synonym": null -} diff --git a/instances/UBERONParcellation/intermediateOrbitalGyrus.jsonld b/instances/UBERONParcellation/intermediateOrbitalGyrus.jsonld deleted file mode 100644 index 3fb58022d..000000000 --- a/instances/UBERONParcellation/intermediateOrbitalGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediateOrbitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate orbital gyrus' is an orbital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105574", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002644#intermediate-orbital-gyrus-1", - "name": "intermediate orbital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002644", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/intermediatePartOfHypophysis.jsonld b/instances/UBERONParcellation/intermediatePartOfHypophysis.jsonld deleted file mode 100644 index 291bec6ba..000000000 --- a/instances/UBERONParcellation/intermediatePartOfHypophysis.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediatePartOfHypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate part of hypophysis' is a regional part of brain. It is part of the adenohypophysis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105575", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023752#intermediate-part-of-hypophysis-1", - "name": "intermediate part of hypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023752", - "synonym": [ - "IHP", - "intermediate lobe", - "intermediate lobe of hypophysis", - "intermediate part of hypophysis", - "intermediate region of hypophysis", - "middle lobe of hypophysis", - "pituitary gland" - ] -} diff --git a/instances/UBERONParcellation/intermediatePeriventricularNucleus.jsonld b/instances/UBERONParcellation/intermediatePeriventricularNucleus.jsonld deleted file mode 100644 index 32dd63daa..000000000 --- a/instances/UBERONParcellation/intermediatePeriventricularNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intermediatePeriventricularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intermediate periventricular nucleus' is a hypothalamic nucleus. It is part of the intermediate hypothalamic region.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105576", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002746#intermediate-periventricular-nucleus-1", - "name": "intermediate periventricular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002746", - "synonym": [ - "hPe", - "intermediate part", - "intermediate periventricular hypothalamic nucleus", - "intermediate periventricular nucleus of hypothalamus", - "intermediate periventricular nucleus of the hypothalamus", - "IPe", - "nucleus periventricularis hypothalami", - "periventricular hypothalamic nucleus", - "periventricular nucleus at the tuberal level" - ] -} diff --git a/instances/UBERONParcellation/internalArcuateFiberBundle.jsonld b/instances/UBERONParcellation/internalArcuateFiberBundle.jsonld deleted file mode 100644 index 56ba7ce98..000000000 --- a/instances/UBERONParcellation/internalArcuateFiberBundle.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/internalArcuateFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Internal arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the white matter of medulla oblongata.", - "description": "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105582", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006087#internal-arcuate-fiber-bundle-1", - "name": "internal arcuate fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006087", - "synonym": [ - "arcuate fibers (medial lemniscus)", - "arcuate fibers medial lemniscus", - "fibrae arcuatae internae", - "fibre arciformes olivares", - "fibre arciformes sensibiles", - "ia", - "internal arcuate fibers", - "internal arcuate fibres", - "internal arcuate tract" - ] -} diff --git a/instances/UBERONParcellation/internalCapsuleOfTelencephalon.jsonld b/instances/UBERONParcellation/internalCapsuleOfTelencephalon.jsonld deleted file mode 100644 index 4741f81fe..000000000 --- a/instances/UBERONParcellation/internalCapsuleOfTelencephalon.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/internalCapsuleOfTelencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Internal capsule of telencephalon' is a cerebral hemisphere white matter.", - "description": "White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105583", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001887#internal-capsule", - "name": "internal capsule of telencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001887", - "synonym": [ - "brain internal capsule", - "capsula interna", - "ic", - "internal capsule", - "internal capsule radiations" - ] -} diff --git a/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld b/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld deleted file mode 100644 index 46ecdcab5..000000000 --- a/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/internalMedullaryLaminaOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Internal medullary lamina of thalamus' is a medullary lamina of thalamus.", - "description": "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105586", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002762#internal-medullary-lamina-of-thalamus-1", - "name": "internal medullary lamina of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002762", - "synonym": [ - "envelope (involucrum medial) (Hassler)", - "iml", - "internal medullary lamina", - "internal medullary lamina of thalamus", - "internal medullary lamina of the thalamus", - "lamina medullaris interna", - "lamina medullaris interna thalami", - "lamina medullaris medialis", - "lamina medullaris medialis thalami", - "lamina medullaris thalami interna" - ] -} diff --git a/instances/UBERONParcellation/interpeduncularNucleus.jsonld b/instances/UBERONParcellation/interpeduncularNucleus.jsonld deleted file mode 100644 index 976c758b3..000000000 --- a/instances/UBERONParcellation/interpeduncularNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interpeduncularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interpeduncular nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105597", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002145#interpeduncular-nucleus-1", - "name": "interpeduncular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002145", - "synonym": [ - "interpedunclear nucleus", - "interpeduncular ganglion", - "interpeduncular nuclei", - "interpeduncular nucleus (Gudden)", - "interpeduncular nucleus of midbrain", - "interpeduncular nucleus tegmentum", - "IP", - "nucleus interpeduncularis", - "nucleus interpeduncularis medialis" - ] -} diff --git a/instances/UBERONParcellation/interpolarPartOfSpinalTrigeminalNucleus.jsonld b/instances/UBERONParcellation/interpolarPartOfSpinalTrigeminalNucleus.jsonld deleted file mode 100644 index d4917a195..000000000 --- a/instances/UBERONParcellation/interpolarPartOfSpinalTrigeminalNucleus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interpolarPartOfSpinalTrigeminalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interpolar part of spinal trigeminal nucleus' is a gray matter of hindbrain. It is part of the spinal nucleus of trigeminal nerve.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105600", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002873#interpolar-part-of-spinal-trigeminal-nucleus-1", - "name": "interpolar part of spinal trigeminal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002873", - "synonym": [ - "interpolar part", - "interpolar part of the spinal trigeminal nucleus", - "ISp5", - "nucleus interpolaris tractus spinalis nervi trigemini", - "nucleus of spinal tract of N. V (subnucleus interpolaris)", - "nucleus spinalis nervi trigemini", - "pars interpolaris", - "spinal nucleus of the trigeminal", - "spinal nucleus of the trigeminal interpolar part", - "spinal nucleus of the trigeminal nerve interpolar part", - "spinal trigeminal nucleus" - ] -} diff --git a/instances/UBERONParcellation/interstitialNucleusOfCajal.jsonld b/instances/UBERONParcellation/interstitialNucleusOfCajal.jsonld deleted file mode 100644 index 5b8a66adc..000000000 --- a/instances/UBERONParcellation/interstitialNucleusOfCajal.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interstitialNucleusOfCajal", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interstitial nucleus of Cajal' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "The largest and most prominent of the cell groups of the medial longitudinal fasciculus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105625", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002551#interstitial-nucleus-of-cajal-1", - "name": "interstitial nucleus of Cajal", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002551", - "synonym": [ - "ICjl", - "interstitial nucleus", - "Interstitial nucleus of Cajal", - "interstitial nucleus of medial longitudinal fasciculus", - "Interstitial nucleus of medial longitudinal fasciculus (Crosby)", - "interstitial nucleus of the medial longitudinal fascicle (Boyce 1895)", - "interstitial nucleus of the medial longitudinal fasciculus", - "NIC", - "nucleus interstitialis", - "nucleus interstitialis Cajal", - "nucleus of the posterior commissure (Kvlliker)" - ] -} diff --git a/instances/UBERONParcellation/interthalamicAdhesion.jsonld b/instances/UBERONParcellation/interthalamicAdhesion.jsonld deleted file mode 100644 index e79eaa278..000000000 --- a/instances/UBERONParcellation/interthalamicAdhesion.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/interthalamicAdhesion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Interthalamic adhesion' is a nervous system commissure.", - "description": "Median gray matter mass that connects the two thalami; present in a large percentage of humans (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1995, pg 76n).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105629", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006681#interthalamic-adhesion", - "name": "interthalamic adhesion", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006681", - "synonym": [ - "interthalamic connection", - "massa intermedia", - "middle commissure" - ] -} diff --git a/instances/UBERONParcellation/intralaminarNuclearGroup.jsonld b/instances/UBERONParcellation/intralaminarNuclearGroup.jsonld deleted file mode 100644 index 3188baff4..000000000 --- a/instances/UBERONParcellation/intralaminarNuclearGroup.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intralaminarNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Intralaminar nuclear group' is a nucleus of dorsal thalamus.", - "description": "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105651", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002733#intralaminar-nuclear-group-1", - "name": "intralaminar nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002733", - "synonym": [ - "ILG", - "intralaminar group of the dorsal thalamus", - "intralaminar nuclear complex", - "intralaminar nuclear group", - "intralaminar nuclear group of thalamus", - "intralaminar nuclei of thalamus", - "intralaminar nuclei of the dorsal thalamus", - "intralaminar thalamic nuclear group", - "intralaminar thalamic nuclei", - "nonspecific thalamic system", - "nuclei intralaminares (thalami)", - "nuclei intralaminares thalami" - ] -} diff --git a/instances/UBERONParcellation/intraparietalSulcus.jsonld b/instances/UBERONParcellation/intraparietalSulcus.jsonld deleted file mode 100644 index d9b39387d..000000000 --- a/instances/UBERONParcellation/intraparietalSulcus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/intraparietalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The intraparietal sulcus is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion.", - "description": "The intraparietal sulcus (IPS) contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/ilx_0105656", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002913#intraparietal-sulcus-1", - "name": "intraparietal sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002913", - "synonym": [ - "interparietal fissure", - "intraparietal sulcus of Turner", - "ips", - "itps", - "sulcus interparietalis", - "sulcus intraparietalis", - "Turner sulcus" - ] -} diff --git a/instances/UBERONParcellation/islaMagnaOfCalleja.jsonld b/instances/UBERONParcellation/islaMagnaOfCalleja.jsonld deleted file mode 100644 index c561ceccb..000000000 --- a/instances/UBERONParcellation/islaMagnaOfCalleja.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/islaMagnaOfCalleja", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Isla magna of Calleja' is a regional part of brain. It is part of the island of Calleja.", - "description": "A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105729", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023868#isla-magna-of-calleja-1", - "name": "isla magna of Calleja", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023868", - "synonym": [ - "ICm", - "insula magna", - "isla magna of calleja", - "Large island of Calleja", - "major island of Calleja" - ] -} diff --git a/instances/UBERONParcellation/islandOfCalleja.jsonld b/instances/UBERONParcellation/islandOfCalleja.jsonld deleted file mode 100644 index c8b7ddadb..000000000 --- a/instances/UBERONParcellation/islandOfCalleja.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/islandOfCalleja", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Island of Calleja' is a telencephalic nucleus. It is part of the cerebral hemisphere.", - "description": "Small clusters of granule cells located in the olfactory tubercle and also within the Island of Calleja magna that lies between the septum and the nucleus accumbens", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105730", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001881#islands-of-calleja", - "name": "island of Calleja", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001881", - "synonym": [ - "Calleja island", - "ICj", - "insula callejae", - "insulae olfactoriae", - "Islands of Calleja", - "islands of Calleja (olfactory tubercle)", - "Islets of Calleja" - ] -} diff --git a/instances/UBERONParcellation/islandsOfCallejaOfOlfactoryTubercle.jsonld b/instances/UBERONParcellation/islandsOfCallejaOfOlfactoryTubercle.jsonld deleted file mode 100644 index 97505c0e5..000000000 --- a/instances/UBERONParcellation/islandsOfCallejaOfOlfactoryTubercle.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/islandsOfCallejaOfOlfactoryTubercle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Islands of Calleja of olfactory tubercle' is a regional part of brain. It is part of the island of Calleja and olfactory tubercle.", - "description": "Part of olfactory tubercle defined by dense aggregations of granule cells", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105732", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023867#islands-of-calleja-of-olfactory-tubercle-1", - "name": "islands of Calleja of olfactory tubercle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023867", - "synonym": [ - "Islets of Calleja", - "islands of calleja of olfactory tubercle" - ] -} diff --git a/instances/UBERONParcellation/isthmusOfCingulateGyrus.jsonld b/instances/UBERONParcellation/isthmusOfCingulateGyrus.jsonld deleted file mode 100644 index 2d0c6a7cf..000000000 --- a/instances/UBERONParcellation/isthmusOfCingulateGyrus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/isthmusOfCingulateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Isthmus of cingulate gyrus' is part of the cingulate gyrus.", - "description": "Component of the cingulate cortex comprising the region linking the posterior cingulate gyrus and the parahippocampal gyrus. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105757", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002738#isthmus-of-cingulate-gyrus-1", - "name": "isthmus of cingulate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002738", - "synonym": [ - "cingulate gyrus isthmus", - "isthmus cinguli", - "isthmus gyri cingulatus", - "isthmus gyri cinguli", - "isthmus of cingulate cortex", - "isthmus of fornicate gyrus", - "isthmus of gyrus fornicatus", - "isthmus of limbic lobe", - "isthmus of the cingulate gyrus", - "isthmus of the gyrus fornicatus", - "isthmus-2" - ] -} diff --git a/instances/UBERONParcellation/juxtarestiformBody.jsonld b/instances/UBERONParcellation/juxtarestiformBody.jsonld deleted file mode 100644 index a7a1e6488..000000000 --- a/instances/UBERONParcellation/juxtarestiformBody.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/juxtarestiformBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Juxtarestiform body' is a white matter of medulla oblongata. It is part of the inferior cerebellar peduncle.", - "description": "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105804", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002592#juxtarestiform-body-1", - "name": "juxtarestiform body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002592", - "synonym": [ - "corpus juxtarestiforme" - ] -} diff --git a/instances/UBERONParcellation/laminaOfSeptumPellucidum.jsonld b/instances/UBERONParcellation/laminaOfSeptumPellucidum.jsonld deleted file mode 100644 index 135167940..000000000 --- a/instances/UBERONParcellation/laminaOfSeptumPellucidum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/laminaOfSeptumPellucidum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lamina of septum pellucidum' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the septum pellucidum.", - "description": "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105979", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002742#lamina-of-septum-pellucidum-1", - "name": "lamina of septum pellucidum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002742", - "synonym": [ - "lamina of the septum pellucidum", - "lamina septi pellucidi", - "laminae septi pellucidi", - "septum pellucidum lamina" - ] -} diff --git a/instances/UBERONParcellation/lateralAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/lateralAmygdaloidNucleus.jsonld deleted file mode 100644 index a3f8ff662..000000000 --- a/instances/UBERONParcellation/lateralAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral amygdaloid nucleus' is a telencephalic nucleus. It is part of the basolateral amygdaloid nuclear complex.", - "description": "The sensory interface of the amygdala where plasticity is mediated (Phelps & LeDoux, 2005, PMID: 16242399).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106043", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002886#lateral-amygdaloid-nucleus-1", - "name": "lateral amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002886", - "synonym": [ - "LA", - "lateral amygdala", - "lateral amygdalar nucleus", - "lateral nucleus of amygdala", - "lateral nucleus of the amygdala", - "lateral principal nucleus of amygdala", - "medial principal nucleus", - "nucleus amygdalae lateralis", - "nucleus amygdaloideus lateralis", - "nucleus lateralis amygdalae" - ] -} diff --git a/instances/UBERONParcellation/lateralAmygdaloidNucleusDorsolateralPart.jsonld b/instances/UBERONParcellation/lateralAmygdaloidNucleusDorsolateralPart.jsonld deleted file mode 100644 index 98a2d5b32..000000000 --- a/instances/UBERONParcellation/lateralAmygdaloidNucleusDorsolateralPart.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralAmygdaloidNucleusDorsolateralPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral amygdaloid nucleus, dorsolateral part' is a regional part of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106044", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023415#lateral-amygdaloid-nucleus-dorsolateral-part-1", - "name": "lateral amygdaloid nucleus, dorsolateral part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023415", - "synonym": [ - "dorsolateral part", - "LaDL", - "lateral amygdaloid nucleus" - ] -} diff --git a/instances/UBERONParcellation/lateralAmygdaloidNucleusVentrolateralPart.jsonld b/instances/UBERONParcellation/lateralAmygdaloidNucleusVentrolateralPart.jsonld deleted file mode 100644 index 4f212227e..000000000 --- a/instances/UBERONParcellation/lateralAmygdaloidNucleusVentrolateralPart.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralAmygdaloidNucleusVentrolateralPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral amygdaloid nucleus, ventrolateral part' is a regional part of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106045", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023416#lateral-amygdaloid-nucleus-ventrolateral-part-1", - "name": "lateral amygdaloid nucleus, ventrolateral part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023416", - "synonym": [ - "LaVL", - "lateral amygdaloid nucleus", - "ventrolateral part" - ] -} diff --git a/instances/UBERONParcellation/lateralAmygdaloidNucleusVentromedialPart.jsonld b/instances/UBERONParcellation/lateralAmygdaloidNucleusVentromedialPart.jsonld deleted file mode 100644 index c7e9fef17..000000000 --- a/instances/UBERONParcellation/lateralAmygdaloidNucleusVentromedialPart.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralAmygdaloidNucleusVentromedialPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral amygdaloid nucleus, ventromedial part' is a regional part of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106046", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023417#lateral-amygdaloid-nucleus-ventromedial-part-1", - "name": "lateral amygdaloid nucleus, ventromedial part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023417", - "synonym": [ - "LaVM", - "lateral amygdaloid nucleus", - "ventromedial part" - ] -} diff --git a/instances/UBERONParcellation/lateralCervicalNucleus.jsonld b/instances/UBERONParcellation/lateralCervicalNucleus.jsonld deleted file mode 100644 index 6fa18e884..000000000 --- a/instances/UBERONParcellation/lateralCervicalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralCervicalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral cervical nucleus' is a nucleus of spinal cord. It is part of the dorsal horn of spinal cord.", - "description": "A diffusely arranged nucleus located in the dorsal portions of the lateral funiculus at about cervical levels C1-C3; synaptic station for the spinocervicothalamic tract.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106050", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002176#lateral-cervical-nucleus", - "name": "lateral cervical nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002176", - "synonym": [ - "LatC", - "lateral cervical nucleus (paxspn)" - ] -} diff --git a/instances/UBERONParcellation/lateralEminenceOfFourthVentricle.jsonld b/instances/UBERONParcellation/lateralEminenceOfFourthVentricle.jsonld deleted file mode 100644 index bb4dbf254..000000000 --- a/instances/UBERONParcellation/lateralEminenceOfFourthVentricle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralEminenceOfFourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral eminence of fourth ventricle' is part of the fourth ventricle.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734681", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034672#lateral-eminence-of-fourth-ventricle", - "name": "lateral eminence of fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034672", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralEminenceOfHypophysis.jsonld b/instances/UBERONParcellation/lateralEminenceOfHypophysis.jsonld deleted file mode 100644 index ca573e07d..000000000 --- a/instances/UBERONParcellation/lateralEminenceOfHypophysis.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralEminenceOfHypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral eminence of hypophysis' is part of the pituitary gland.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106054", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027109#lateral-eminence-of-hypophysis-1", - "name": "lateral eminence of hypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027109", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralGeniculateBody.jsonld b/instances/UBERONParcellation/lateralGeniculateBody.jsonld deleted file mode 100644 index 782154b13..000000000 --- a/instances/UBERONParcellation/lateralGeniculateBody.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral geniculate body' is a nucleus of dorsal thalamus. It is part of the metathalamus.", - "description": "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106064", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001926#lateral-geniculate-body-1", - "name": "lateral geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001926", - "synonym": [ - "corpus geniculatum externum", - "corpus geniculatum laterale", - "corpus geniculatum laterales", - "corpus geniculatus lateralis", - "external geniculate body", - "lateral geniculate body", - "lateral geniculate complex", - "lateral geniculate nucleus", - "LGB", - "LGN", - "nucleus corporis geniculati lateralis", - "nucleus geniculatus lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralGlobusPallidus.jsonld b/instances/UBERONParcellation/lateralGlobusPallidus.jsonld deleted file mode 100644 index e0a319298..000000000 --- a/instances/UBERONParcellation/lateralGlobusPallidus.jsonld +++ /dev/null @@ -1,43 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralGlobusPallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral globus pallidus' is a cerebral hemisphere gray matter. It is part of the globus pallidus.", - "description": "The more lateral of the two segments of the globus pallidus, abutting the putamen in species which have both a caudate and putamen; the caudoputamen in other species.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104658", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002476#globus-pallidus-external-segment", - "name": "lateral globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002476", - "synonym": [ - "external globus pallidus", - "external pallidum", - "external part of globus pallidus", - "external segment", - "globus pallidus", - "globus pallidus (rat)", - "globus pallidus extermal segment", - "globus pallidus external segment", - "globus pallidus externus", - "globus pallidus lateral part", - "globus pallidus lateral segment", - "globus pallidus lateralis", - "Gpe", - "lateral division of globus pallidus", - "lateral globus pallidus", - "lateral pallidal segment", - "lateral pallidum", - "lateral part", - "lateral part of globus pallidus", - "lateral segment", - "lateral segment of globus pallidus", - "lateral segment of the globus pallidus", - "nucleus lateralis globi pallidi", - "pallidum dorsal region external segment", - "pallidum I", - "pallidus II", - "pars externa", - "pars lateralis globi pallidi medialis" - ] -} diff --git a/instances/UBERONParcellation/lateralHabenularNucleus.jsonld b/instances/UBERONParcellation/lateralHabenularNucleus.jsonld deleted file mode 100644 index c88db02c6..000000000 --- a/instances/UBERONParcellation/lateralHabenularNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralHabenularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral habenular nucleus' is a habenular nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106068", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001941#lateral-habenular-nucleus-1", - "name": "lateral habenular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001941", - "synonym": [ - "lateral habenula", - "lateral habenula (Nissl)", - "LHb", - "nucleus habenulae lateralis", - "nucleus habenularis lateralis", - "nucleus habenularis lateralis epithalami" - ] -} diff --git a/instances/UBERONParcellation/lateralHypothalamicArea.jsonld b/instances/UBERONParcellation/lateralHypothalamicArea.jsonld deleted file mode 100644 index afd835efd..000000000 --- a/instances/UBERONParcellation/lateralHypothalamicArea.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralHypothalamicArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral hypothalamic area' is a regional part of brain. It is part of the lateral zone of hypothalamus.", - "description": "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106069", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002430#lateral-hypothalamic-area", - "name": "lateral hypothalamic area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002430", - "synonym": [ - "area hypothalamica lateralis", - "area lateralis hypothalami", - "lateral division of hypothalamus", - "lateral group of hypothalamic nuclei", - "lateral hypothalamic area", - "lateral hypothalamic area (Nissl 1913)", - "lateral hypothalamic area proper", - "lateral hypothalamic group", - "lateral hypothalamic nucleus", - "lateral hypothalamic region", - "lateral hypothalamic zone (Crosby)", - "lateral hypothalamus", - "LH" - ] -} diff --git a/instances/UBERONParcellation/lateralHypothalamicNucleus.jsonld b/instances/UBERONParcellation/lateralHypothalamicNucleus.jsonld deleted file mode 100644 index 37e3f4f6e..000000000 --- a/instances/UBERONParcellation/lateralHypothalamicNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralHypothalamicNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral hypothalamic nucleus' is a hypothalamic nucleus. It is part of the lateral hypothalamic area.", - "description": "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106071", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001937#lateral-hypothalamic-nucleus-1", - "name": "lateral hypothalamic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001937", - "synonym": [ - "areas of Economo", - "economo's areas", - "lateral hypothalamic nuclei", - "LHy", - "nucleus hypothalamicus lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralLemniscus.jsonld b/instances/UBERONParcellation/lateralLemniscus.jsonld deleted file mode 100644 index a5f6822cb..000000000 --- a/instances/UBERONParcellation/lateralLemniscus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralLemniscus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral lemniscus' is a nervous system lemniscus.", - "description": "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106074", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002953#lateral-lemniscus-1", - "name": "lateral lemniscus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002953", - "synonym": [ - "central acoustic tract", - "lateral fillet", - "lateral lemniscus (Reil)", - "lemniscus acusticus", - "lemniscus lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralMammillaryNucleus.jsonld b/instances/UBERONParcellation/lateralMammillaryNucleus.jsonld deleted file mode 100644 index 05f27d34e..000000000 --- a/instances/UBERONParcellation/lateralMammillaryNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralMammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral mammillary nucleus' is a hypothalamic nucleus. It is part of the mammillary body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106075", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001938#lateral-mammillary-nucleus-1", - "name": "lateral mammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001938", - "synonym": [ - "lateral mamillary nucleus", - "lateral mammillary hypothalamic nucleus", - "lateral mammillary nucleus (Gudden)", - "lateral nucleus of mammillary body", - "LM", - "nucleus corporis mamillaris lateralis", - "nucleus intercalatus (Olszewski)", - "nucleus lateralis corpus mamillaris", - "nucleus mammillaris lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld b/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld deleted file mode 100644 index 04f762034..000000000 --- a/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus.jsonld +++ /dev/null @@ -1,40 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralMedullaryLaminaOfGlobusPallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral medullary lamina of globus pallidus' is a white matter lamina of cerebral hemisphere. It is part of the globus pallidus.", - "description": "Thin band of myelinated fibers lying on the lateral (external) surface of the globus pallidus, external segment, separating it from the putamen. (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 303).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106077", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002765#lateral-medullary-lamina", - "name": "lateral medullary lamina of globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002765", - "synonym": [ - "external medulary lamina of globus pallidus", - "external medulary lamina of lentiform nucleus", - "external medullary lamina of corpus striatum", - "external medullary lamina of globus pallidus", - "external medullary lamina of lentiform nucleus", - "globus pallidus", - "lamella pallidi externa", - "lamina medullaris externa", - "lamina medullaris externa corporis striati", - "lamina medullaris externa pallidi", - "lamina medullaris lateralis", - "lamina medullaris lateralis corporis striati", - "lamina pallidi externa", - "lateral medulary lamina of globus pallidus", - "lateral medulary stria", - "lateral medullary lamina", - "lateral medullary lamina of corpus striatum", - "lateral medullary lamina of globus pallidus", - "lateral medullary lamina of pallidum", - "lateral medullary lamina of the globus pallidus", - "lateral medullary stria", - "lml", - "medulary lamina of pallidum", - "outer medulary lamina", - "outer medullary lamina" - ] -} diff --git a/instances/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld b/instances/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld deleted file mode 100644 index 80fde356f..000000000 --- a/instances/UBERONParcellation/lateralNuclearGroupOfThalamus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralNuclearGroupOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral nuclear group of thalamus' is a nucleus of dorsal thalamus.", - "description": "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106078", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002736#lateral-nuclear-group", - "name": "lateral nuclear group of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002736", - "synonym": [ - "lateral group of nuclei", - "lateral group of the dorsal thalamus", - "lateral nuclear group", - "lateral nuclear group of dorsal thalamus", - "lateral nuclear group of thalamus", - "lateral nucleus of thalamus", - "lateral thalamic group", - "lateral thalamic nuclear group", - "lateral thalamic nuclear region", - "lateral thalamic nuclei", - "lateral thalamic nucleus", - "LNG", - "nuclei laterales thalami", - "nucleus lateralis thalami" - ] -} diff --git a/instances/UBERONParcellation/lateralNucleusOfStriaTerminalis.jsonld b/instances/UBERONParcellation/lateralNucleusOfStriaTerminalis.jsonld deleted file mode 100644 index 85e2e53d1..000000000 --- a/instances/UBERONParcellation/lateralNucleusOfStriaTerminalis.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralNucleusOfStriaTerminalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral nucleus of stria terminalis' is a telencephalic nucleus. It is part of the bed nucleus of stria terminalis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106079", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034894#lateral-nucleus-of-stria-terminalis", - "name": "lateral nucleus of stria terminalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034894", - "synonym": [ - "BSTL", - "lateral bed nucleus of stria terminalis", - "lateral bed nucleus of the stria terminalis", - "lateral subdivision of BNST" - ] -} diff --git a/instances/UBERONParcellation/lateralOccipitalCortex.jsonld b/instances/UBERONParcellation/lateralOccipitalCortex.jsonld deleted file mode 100644 index 8bd8da1e2..000000000 --- a/instances/UBERONParcellation/lateralOccipitalCortex.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralOccipitalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral occipital cortex' is an occipital gyrus. It is part of the neocortex.", - "description": "Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106080", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006114#lateral-occipital-cortex-1", - "name": "lateral occipital cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006114", - "synonym": [ - "gyrus occipitalis lateralis", - "gyrus occipitalis medius", - "gyrus occipitalis medius (mai)", - "gyrus occipitalis secundus", - "lateral occipital cortex", - "lateral occipital gyrus", - "middle occipital gyrus" - ] -} diff --git a/instances/UBERONParcellation/lateralOlfactoryStria.jsonld b/instances/UBERONParcellation/lateralOlfactoryStria.jsonld deleted file mode 100644 index 96e00a2e6..000000000 --- a/instances/UBERONParcellation/lateralOlfactoryStria.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralOlfactoryStria", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone).", - "description": "'Lateral olfactory stria' is an olfactory tract linking bulb to ipsilateral dorsal telencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106082", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001888#lateral-olfactory-stria-1", - "name": "lateral olfactory stria", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001888", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralOrbitalFrontalCortex.jsonld b/instances/UBERONParcellation/lateralOrbitalFrontalCortex.jsonld deleted file mode 100644 index 9599c8adb..000000000 --- a/instances/UBERONParcellation/lateralOrbitalFrontalCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralOrbitalFrontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral orbital frontal cortex' is a regional part of brain. It is part of the orbitofrontal cortex.", - "description": "Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106083", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022716#lateral-orbital-frontal-cortex-1", - "name": "lateral orbital frontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022716", - "synonym": [ - "lateral orbital frontal cortex" - ] -} diff --git a/instances/UBERONParcellation/lateralOrbitalGyrus.jsonld b/instances/UBERONParcellation/lateralOrbitalGyrus.jsonld deleted file mode 100644 index 95a7f58ad..000000000 --- a/instances/UBERONParcellation/lateralOrbitalGyrus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralOrbitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral orbital gyrus' is an orbital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106084", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002564#lateral-orbital-gyrus-1", - "name": "lateral orbital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002564", - "synonym": [ - "gyrus orbitalis lateralis", - "gyrus orbitalis longitudinalis externus" - ] -} diff --git a/instances/UBERONParcellation/lateralParabrachialNucleus.jsonld b/instances/UBERONParcellation/lateralParabrachialNucleus.jsonld deleted file mode 100644 index 35aeb8fd5..000000000 --- a/instances/UBERONParcellation/lateralParabrachialNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralParabrachialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral parabrachial nucleus' is a parabrachial nucleus. It is part of the pontine tegmentum.", - "description": "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106086", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003007#lateral-parabrachial-nucleus-1", - "name": "lateral parabrachial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003007", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralParagigantocellularNucleus.jsonld b/instances/UBERONParcellation/lateralParagigantocellularNucleus.jsonld deleted file mode 100644 index bedbd91c7..000000000 --- a/instances/UBERONParcellation/lateralParagigantocellularNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralParagigantocellularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral paragigantocellular nucleus' is a paragigantocellular nucleus.", - "description": "Nucleus located in the rostral ventrolateral medulla. The PGL was originally identified by cytoarchitectural criteria in the human medulla (Olszewski and Baxter, 1954). In humans, the PGL is located in the ventrolateral quadrant of the rostral medullary tegmentum between the nucleus subtrigeminalis caudally, trapezoid body and the superior olive rostrally, nucleus gigantocellularis medially, spinothalamic tract fibers laterally, inferior olive ventrally, and the nucleus ambiguous dorsally (Olszewski and Baxter, 1954). In the rat, the PGL has been further subdivided into retrofacial PGL (caudal to the facial nucleus), and more rostrally located juxtafacial PGL (medial to the facial nucleus), based upon different connectivity.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106087", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016824#lateral-paragigantocellular-nucleus", - "name": "lateral paragigantocellular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016824", - "synonym": [ - "lateral paragigantocellular nucleus", - "lateral paragigantocellular reticular nucleus", - "lateral part", - "nucleus paragigantocellularis lateralis", - "paragigantocellular nucleus", - "paragigantocellular reticular nucleus", - "PGL" - ] -} diff --git a/instances/UBERONParcellation/lateralPartOfBasalAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/lateralPartOfBasalAmygdaloidNucleus.jsonld deleted file mode 100644 index a92e3306d..000000000 --- a/instances/UBERONParcellation/lateralPartOfBasalAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPartOfBasalAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral part of basal amygdaloid nucleus' is a cerebral hemisphere gray matter. It is part of the basal amygdaloid nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106089", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002888#lateral-part-of-basal-amygdaloid-nucleus-1", - "name": "lateral part of basal amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002888", - "synonym": [ - "BAL", - "lateral basal nucleus of amygdala", - "lateral basal nucleus of the amygdala", - "lateral division of basal nucleus", - "lateral division of the basal nucleus", - "lateral part of the basal amygdalar nucleus", - "lateral part of the basolateral nucleus", - "nucleus amygdalae basalis", - "nucleus amygdaloideus basalis", - "nucleus basalis lateralis amygdalae", - "pars lateralis", - "pars lateralis magnocellularis" - ] -} diff --git a/instances/UBERONParcellation/lateralPartOfMedialMammillaryNucleus.jsonld b/instances/UBERONParcellation/lateralPartOfMedialMammillaryNucleus.jsonld deleted file mode 100644 index 87aa1c384..000000000 --- a/instances/UBERONParcellation/lateralPartOfMedialMammillaryNucleus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPartOfMedialMammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral part of medial mammillary nucleus' is a gray matter of diencephalon. It is part of the medial mammillary nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106090", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002664#lateral-part-of-medial-mammillary-nucleus-1", - "name": "lateral part of medial mammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002664", - "synonym": [ - "intercalated mammillary nucleus", - "intermediate mammillary nucleus", - "lateral mammillary nucleus (Gagel)", - "lateral part", - "lateral part of the medial mammillary nucleus", - "lateral subdivision of medial mammillary nucleus", - "medial mammillary nucleus", - "medial mammillary nucleus lateral part", - "MML", - "nucleus corporis mamillaris medialis", - "nucleus intercalatus corporis mammillaris", - "nucleus intermedius corpus mamillaris", - "pars lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralPericuneateNucleus.jsonld b/instances/UBERONParcellation/lateralPericuneateNucleus.jsonld deleted file mode 100644 index 1561b4527..000000000 --- a/instances/UBERONParcellation/lateralPericuneateNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPericuneateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral pericuneate nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106093", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002874#lateral-pericuneate-nucleus-1", - "name": "lateral pericuneate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002874", - "synonym": [ - "LPCu", - "nucleus pericuneatus lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralPesLemniscus.jsonld b/instances/UBERONParcellation/lateralPesLemniscus.jsonld deleted file mode 100644 index 5ef3a9550..000000000 --- a/instances/UBERONParcellation/lateralPesLemniscus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPesLemniscus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral pes lemniscus' is a nervous system lemniscus. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106094", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003010#lateral-pes-lemniscus-1", - "name": "lateral pes lemniscus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003010", - "synonym": [ - "deep pes lemniscus", - "fasciculi laterales pontis", - "fussschleife", - "lateral pontine bundle", - "Laterale Haubenfussschleife", - "Laterale pontine Buendel", - "lpl", - "pes lemnisci profundus", - "pes lemniscus lateralis", - "pes lemniscus profond" - ] -} diff --git a/instances/UBERONParcellation/lateralPreopticNucleus.jsonld b/instances/UBERONParcellation/lateralPreopticNucleus.jsonld deleted file mode 100644 index 99d6853a5..000000000 --- a/instances/UBERONParcellation/lateralPreopticNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPreopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral preoptic nucleus' is a hypothalamic nucleus. It is part of the lateral zone of hypothalamus.", - "description": "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106098", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001931#lateral-preoptic-nucleus-1", - "name": "lateral preoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001931", - "synonym": [ - "area praeoptica lateralis", - "area preoptica lateralis", - "lateral preoptic area", - "lateral preoptic hypothalamic nucleus", - "LPO", - "nucleus praeopticus lateralis", - "nucleus preopticus lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralPulvinarNucleus.jsonld b/instances/UBERONParcellation/lateralPulvinarNucleus.jsonld deleted file mode 100644 index f3d20023d..000000000 --- a/instances/UBERONParcellation/lateralPulvinarNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralPulvinarNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral pulvinar nucleus' is a nucleus of dorsal thalamus. It is part of the pulvinar nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106099", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002636#lateral-pulvinar-nucleus-1", - "name": "lateral pulvinar nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002636", - "synonym": [ - "lateral pulvinar nucleus of thalamus", - "LPul", - "nucleus pulvinaris lateralis", - "nucleus pulvinaris lateralis (Hassler)", - "nucleus pulvinaris lateralis thalami", - "nucleus pulvinaris thalami", - "pars lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralRecessOfFourthVentricle.jsonld b/instances/UBERONParcellation/lateralRecessOfFourthVentricle.jsonld deleted file mode 100644 index 50ab2db2d..000000000 --- a/instances/UBERONParcellation/lateralRecessOfFourthVentricle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralRecessOfFourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral recess of fourth ventricle' is an anatomical entity. It is part of the fourth ventricle.", - "description": "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736090", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007656#lateral-recess-of-fourth-ventricle", - "name": "lateral recess of fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007656", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralReticularNucleus.jsonld b/instances/UBERONParcellation/lateralReticularNucleus.jsonld deleted file mode 100644 index 101e0a9e9..000000000 --- a/instances/UBERONParcellation/lateralReticularNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral reticular nucleus' is a nucleus of medulla oblongata. It is part of the lateral medullary reticular complex.", - "description": "A nucleus of the lateral medullary nuclear complex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106100", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002154#lateral-reticular-nucleus-1", - "name": "lateral reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002154", - "synonym": [ - "lateral reticular nuclei", - "lateral reticular nucleus (medulla)", - "LRt", - "nucleus reticularis lateralis medullae oblongatae" - ] -} diff --git a/instances/UBERONParcellation/lateralSeptalComplex.jsonld b/instances/UBERONParcellation/lateralSeptalComplex.jsonld deleted file mode 100644 index e796a554f..000000000 --- a/instances/UBERONParcellation/lateralSeptalComplex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSeptalComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral septal complex' is a septal nuclear complex. It is part of the striatum.", - "description": "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728564", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007628#lateral-septal-complex", - "name": "lateral septal complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007628", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralSeptalNucleus.jsonld b/instances/UBERONParcellation/lateralSeptalNucleus.jsonld deleted file mode 100644 index eae7af072..000000000 --- a/instances/UBERONParcellation/lateralSeptalNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSeptalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral septal nucleus' is a telencephalic nucleus. It is part of the lateral septal complex.", - "description": "Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106106", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002667#lateral-septal-nucleus-1", - "name": "lateral septal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002667", - "synonym": [ - "lateral parolfactory nucleus", - "lateral septal nucleus (Cajal)", - "lateral septum", - "lateral septum nucleus", - "nucleus lateralis septi", - "nucleus septalis lateralis", - "nucleus septi lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralSpinalNucleus.jsonld b/instances/UBERONParcellation/lateralSpinalNucleus.jsonld deleted file mode 100644 index 621981ddf..000000000 --- a/instances/UBERONParcellation/lateralSpinalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSpinalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral spinal nucleus' is a nucleus of spinal cord. It is part of the dorsal horn of spinal cord.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106113", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035024#lateral-spinal-nucleus", - "name": "lateral spinal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035024", - "synonym": [ - "lateral spinal nucleus (paxspn)", - "LSp" - ] -} diff --git a/instances/UBERONParcellation/lateralSulcus.jsonld b/instances/UBERONParcellation/lateralSulcus.jsonld deleted file mode 100644 index 28f29f9e6..000000000 --- a/instances/UBERONParcellation/lateralSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral sulcus' is a subarachnoid sulcus. It is part of the cerebral cortex.", - "description": "A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106115", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002721#lateral-sulcus-1", - "name": "lateral sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002721", - "synonym": null -} diff --git a/instances/UBERONParcellation/lateralSuperiorOlivaryNucleus.jsonld b/instances/UBERONParcellation/lateralSuperiorOlivaryNucleus.jsonld deleted file mode 100644 index 29aca3f15..000000000 --- a/instances/UBERONParcellation/lateralSuperiorOlivaryNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralSuperiorOlivaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral superior olivary nucleus' is a nucleus of superior olivary complex. It is part of the primary superior olive.", - "description": "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106117", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002779#lateral-superior-olivary-nucleus-1", - "name": "lateral superior olivary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002779", - "synonym": [ - "accessory olivary nucleus", - "accessory superior olivary nucleus", - "accessory superior olive", - "inferior olivary complex dorsalaccessory nucleus", - "lateral part", - "lateral superior olive", - "LSO", - "LSON", - "nucleus olivaris superior lateralis", - "superior olivary complex", - "superior olivary nucleus", - "superior olive lateral part" - ] -} diff --git a/instances/UBERONParcellation/lateralTuberalNucleus.jsonld b/instances/UBERONParcellation/lateralTuberalNucleus.jsonld deleted file mode 100644 index 7c86e78ff..000000000 --- a/instances/UBERONParcellation/lateralTuberalNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralTuberalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral tuberal nucleus' is a hypothalamic nucleus. It is part of the lateral hypothalamic area.", - "description": "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106124", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000435#lateral-tuberal-nuclear-complex", - "name": "lateral tuberal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000435", - "synonym": [ - "lateral tuberal hypothalamic nuclei", - "lateral tuberal nuclear complex", - "lateral tuberal nuclei", - "lateral tuberal nucleus", - "LTu", - "nuclei tuberales laterales", - "nucleus tuberis", - "nucleus tuberis hypothalami", - "nucleus tuberis lateralis" - ] -} diff --git a/instances/UBERONParcellation/lateralVestibularNucleus.jsonld b/instances/UBERONParcellation/lateralVestibularNucleus.jsonld deleted file mode 100644 index 5573aebce..000000000 --- a/instances/UBERONParcellation/lateralVestibularNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lateralVestibularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lateral vestibular nucleus' is a vestibular nucleus.", - "description": "One of the nuclei comprising the vestibular nuclear complex. In some mammals, e.g., primates, it is further subdivided into subnuclei. It therefore differs in appearance and topology in different mammals.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106126", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007230#lateral-vestibular-nucleus", - "name": "lateral vestibular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007230", - "synonym": [ - "Deiter's nucleus", - "Deiter's nucleus", - "Deiters nucleus", - "Deiters' nucleus", - "Lateral nucleus of Deiters", - "lateral vestibular nucleus (Deiters)", - "nucleus of Deiters", - "nucleus vestibularis lateralis" - ] -} diff --git a/instances/UBERONParcellation/layerOfHippocampus.jsonld b/instances/UBERONParcellation/layerOfHippocampus.jsonld deleted file mode 100644 index 0fec6e2e0..000000000 --- a/instances/UBERONParcellation/layerOfHippocampus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/layerOfHippocampus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Layer of hippocampus' is a central nervous system cell part cluster and central nervous system gray matter layer. It is part of the hippocampal formation.", - "description": "The layers of the laminar structure of the hippocampus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102761", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002305#cytoarchitectural-fields-of-hippocampal-formation", - "name": "layer of hippocampus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002305", - "synonym": [ - "cytoarchitectural fields of hippocampal formation", - "hippocampus layer", - "hippocampus proper layer", - "layer of cornu ammonis" - ] -} diff --git a/instances/UBERONParcellation/lenticularFasciculus.jsonld b/instances/UBERONParcellation/lenticularFasciculus.jsonld deleted file mode 100644 index bd4502ba3..000000000 --- a/instances/UBERONParcellation/lenticularFasciculus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lenticularFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lenticular fasciculus' is a ventral thalamic fasciculus.", - "description": "The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106170", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014529#lenticular-fasciculus-1", - "name": "lenticular fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014529", - "synonym": [ - "dorsal division of ansa lenticularis", - "fasciculus lenticularis", - "fasciculus lenticularis [h2]", - "field H2", - "Field H2 of Forel", - "Forel's field H2", - "forel's field h2", - "lenticular fasciculus", - "lenticular fasciculus [h2]", - "lenticular fasciculus of diencephalon", - "lenticular fasciculus of telencephalon", - "tegmental area h2" - ] -} diff --git a/instances/UBERONParcellation/lentiformNucleus.jsonld b/instances/UBERONParcellation/lentiformNucleus.jsonld deleted file mode 100644 index 28a78edd2..000000000 --- a/instances/UBERONParcellation/lentiformNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lentiformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lentiform nucleus' is a telencephalic nucleus. It is part of the ventral striatum.", - "description": "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725892", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002263#lentiform-nucleus", - "name": "lentiform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002263", - "synonym": null -} diff --git a/instances/UBERONParcellation/limbicLobe.jsonld b/instances/UBERONParcellation/limbicLobe.jsonld deleted file mode 100644 index 07255c119..000000000 --- a/instances/UBERONParcellation/limbicLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/limbicLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Part of cerebral hemisphere located on the medial surface, forming a ring around the brain stem.", - "description": "'Limbic lobe' is a lobe of cerebral hemisphere.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106264", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002600#limbic-lobe-1", - "name": "limbic lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002600", - "synonym": null -} diff --git a/instances/UBERONParcellation/limenOfInsula.jsonld b/instances/UBERONParcellation/limenOfInsula.jsonld deleted file mode 100644 index 6fa8719eb..000000000 --- a/instances/UBERONParcellation/limenOfInsula.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/limenOfInsula", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Limen of insula' is a gyrus. It is part of the insula.", - "description": "The anterior basal part of the insular cortex, which separates the lateral surface of the insula from the anterior perforated substance (Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 80).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106266", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002724#limen-of-insula-1", - "name": "limen of insula", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002724", - "synonym": [ - "ambiens gyrus", - "ambient gyrus", - "angulus gyri olfactorii lateralis", - "gyrus ambiens", - "gyrus ambiens (Noback)", - "insula limen", - "limen insula", - "limen insulae", - "limen of the insula", - "lmi" - ] -} diff --git a/instances/UBERONParcellation/limitansNucleus.jsonld b/instances/UBERONParcellation/limitansNucleus.jsonld deleted file mode 100644 index ed2d49fa5..000000000 --- a/instances/UBERONParcellation/limitansNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/limitansNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Limitans nucleus' is a nucleus of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106267", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003026#limitans-nucleus-1", - "name": "limitans nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003026", - "synonym": [ - "Lim", - "limitans thalamic nucleus", - "nucleus limitans", - "nucleus limitans opticus (Hassler)", - "nucleus limitans thalami" - ] -} diff --git a/instances/UBERONParcellation/linearNucleus.jsonld b/instances/UBERONParcellation/linearNucleus.jsonld deleted file mode 100644 index 6da6d6838..000000000 --- a/instances/UBERONParcellation/linearNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/linearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Linear nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106275", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002557#linear-nucleus-1", - "name": "linear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002557", - "synonym": null -} diff --git a/instances/UBERONParcellation/lingualGyrus.jsonld b/instances/UBERONParcellation/lingualGyrus.jsonld deleted file mode 100644 index 54f4a9a94..000000000 --- a/instances/UBERONParcellation/lingualGyrus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lingualGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lingual gyrus' is an occipital gyrus.", - "description": "Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106278", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002943#lingual-gyrus-1", - "name": "lingual gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002943", - "synonym": [ - "gyrus lingualis", - "gyrus occipitotemporalis medialis", - "lingula gyrus", - "lingula of cerebral hemisphere", - "medial occipito-temporal gyrus", - "medial occipitotemporal gyrus", - "medial occipitotemporal gyrus-2" - ] -} diff --git a/instances/UBERONParcellation/lobeOfCerebralHemisphere.jsonld b/instances/UBERONParcellation/lobeOfCerebralHemisphere.jsonld deleted file mode 100644 index 3e898abaf..000000000 --- a/instances/UBERONParcellation/lobeOfCerebralHemisphere.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lobeOfCerebralHemisphere", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lobe of cerebral hemisphere' is part of the cerebral hemisphere.", - "description": "Divisions of the cerebral cortex from gross anatomical observation based on the locations of major sulci and fissures in gyrencephalic animals, including both the gray matter and underlying white matter. From 4-6 lobes have been defined.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106316", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016526#lobe-of-cerebral-cortex", - "name": "lobe of cerebral hemisphere", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016526", - "synonym": [ - "cerebral cortical segment", - "cerebral hemisphere lobe", - "cerebral lobe", - "cerebral lobes", - "lobe of cerebral cortex", - "lobe parts of cerebral cortex", - "lobes of the brain", - "lobi cerebri", - "regional organ part of cerebral cortex", - "segment of cerebral cortex" - ] -} diff --git a/instances/UBERONParcellation/locusCeruleus.jsonld b/instances/UBERONParcellation/locusCeruleus.jsonld deleted file mode 100644 index 494c30874..000000000 --- a/instances/UBERONParcellation/locusCeruleus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/locusCeruleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Locus ceruleus' is a brainstem nucleus and hindbrain nucleus. It is part of the pontine tegmentum.", - "description": "A noradrenergic nucleus in the brain stem involved with physiological responses to stress and panic; also implicated in physical dependence and withdrawal. (Adapted from Wikipedia)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106335", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002148#locus-ceruleus-1", - "name": "locus ceruleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002148", - "synonym": [ - "blue nucleus", - "caerulean nucleus", - "LC", - "loci coeruleus", - "locus caeruleus", - "locus cinereus", - "locus coeruleu", - "locus coeruleus", - "locus coeruleus (Vicq d'Azyr)", - "nucleus caeruleus", - "nucleus loci caerulei", - "nucleus of locus caeruleus", - "Nucleus Pigmentosus Pontis", - "substantia ferruginea" - ] -} diff --git a/instances/UBERONParcellation/longitudinalPontineFibers.jsonld b/instances/UBERONParcellation/longitudinalPontineFibers.jsonld deleted file mode 100644 index 07e6c2bc0..000000000 --- a/instances/UBERONParcellation/longitudinalPontineFibers.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/longitudinalPontineFibers", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Longitudinal pontine fibers' is a tract of brain. It is part of the basal part of pons.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106355", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002732#longitudinal-pontine-fibers-1", - "name": "longitudinal pontine fibers", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002732", - "synonym": [ - "corticofugal fibers", - "fasiculii longitudinales pyramidales", - "fibrae pontis longitudinales", - "longitudinal fasciculus of the pons", - "longitudinal pontine fibers", - "longitudinal pontine fibres", - "longitudinal pontine tract" - ] -} diff --git a/instances/UBERONParcellation/lowerRhombicLip.jsonld b/instances/UBERONParcellation/lowerRhombicLip.jsonld deleted file mode 100644 index 416cca131..000000000 --- a/instances/UBERONParcellation/lowerRhombicLip.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/lowerRhombicLip", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Lower rhombic lip' is a regional part of brain. It is part of the rhombic lip.", - "description": "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729564", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009840#lower-rhombic-lip", - "name": "lower rhombic lip", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009840", - "synonym": null -} diff --git a/instances/UBERONParcellation/magnocellularNucleusOfMedialGeniculateBody.jsonld b/instances/UBERONParcellation/magnocellularNucleusOfMedialGeniculateBody.jsonld deleted file mode 100644 index af2fb00e5..000000000 --- a/instances/UBERONParcellation/magnocellularNucleusOfMedialGeniculateBody.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/magnocellularNucleusOfMedialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Magnocellular nucleus of medial geniculate body' is a nucleus of dorsal thalamus. It is part of the medial geniculate body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106472", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002759#magnocellular-nucleus-of-medial-geniculate-body-1", - "name": "magnocellular nucleus of medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002759", - "synonym": [ - "corpus geniculatus mediale", - "magnocelluar nucleus of medial geniculate complex", - "magnocellular medial geniculate nucleus", - "magnocellular nucleus of medial geniculate complex", - "magnocellular nucleus of the medial geniculate body", - "medial division of medial geniculate body", - "medial geniculate complex", - "medial geniculate complex medial part", - "medial geniculate nucleus", - "medial geniculate nucleus medial part", - "medial magnocellular nucleus of medial geniculate body", - "medial nucleus of medial geniculate body", - "medial part", - "MMG", - "nucleus corporis geniculati medialis", - "nucleus geniculatus medialis", - "nucleus geniculatus medialis magnocelluaris (Hassler)", - "nucleus geniculatus medialis magnocellularis (Hassler)", - "nucleus medialis magnocellularis corporis geniculati medialis", - "pars magnocelluaris", - "pars magnocellularis" - ] -} diff --git a/instances/UBERONParcellation/magnocellularPartOfMedialDorsalNucleus.jsonld b/instances/UBERONParcellation/magnocellularPartOfMedialDorsalNucleus.jsonld deleted file mode 100644 index 63433e4a3..000000000 --- a/instances/UBERONParcellation/magnocellularPartOfMedialDorsalNucleus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/magnocellularPartOfMedialDorsalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Magnocellular part of medial dorsal nucleus' is a gray matter of diencephalon. It is part of the medial dorsal nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106473", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002647#magnocellular-part-of-medial-dorsal-nucleus-1", - "name": "magnocellular part of medial dorsal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002647", - "synonym": [ - "dorsomedial thalamic nucleus", - "magnocellular mediodorsal nucleus", - "magnocellular nucleus of medial dorsal nucleus of thalamus", - "magnocellular part", - "magnocellular part of dorsomedial nucleus", - "magnocellular part of mediodorsal nucleus", - "magnocellular part of the medial dorsal nucleus", - "MDM", - "nucleus medialis dorsalis", - "nucleus medialis fibrosus", - "nucleus medialis fibrosus (Hassler)", - "pars magnocellularis", - "pars magnocellularis nuclei mediodorsalis thalami" - ] -} diff --git a/instances/UBERONParcellation/magnocellularPartOfRedNucleus.jsonld b/instances/UBERONParcellation/magnocellularPartOfRedNucleus.jsonld deleted file mode 100644 index 4434f75fd..000000000 --- a/instances/UBERONParcellation/magnocellularPartOfRedNucleus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/magnocellularPartOfRedNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Magnocellular part of red nucleus' is a gray matter of midbrain. It is part of the red nucleus.", - "description": "Caudal region of the red nucleus located in the midbrain, containing mostly large cell bodies.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106474", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002936#magnocellular-part-of-red-nucleus-1", - "name": "magnocellular part of red nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002936", - "synonym": [ - "magnocellular part", - "magnocellular part of the red nucleus", - "magnocellular red nucleus", - "nucleus ruber", - "nucleus ruber magnocellularis", - "palaeorubrum", - "paleoruber", - "pars magnocellularis", - "pars magnocellularis (ruber)", - "pars magnocellularis nuclei rubri", - "red nucleus", - "red nucleus magnocellular part", - "RMC" - ] -} diff --git a/instances/UBERONParcellation/magnocellularPartOfVentralAnteriorNucleus.jsonld b/instances/UBERONParcellation/magnocellularPartOfVentralAnteriorNucleus.jsonld deleted file mode 100644 index cd4d39963..000000000 --- a/instances/UBERONParcellation/magnocellularPartOfVentralAnteriorNucleus.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/magnocellularPartOfVentralAnteriorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Magnocellular part of ventral anterior nucleus' is a gray matter of diencephalon. It is part of the ventral anterior nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106475", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002935#magnocellular-part-of-ventral-anterior-nucleus-1", - "name": "magnocellular part of ventral anterior nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002935", - "synonym": [ - "magnocellular division of ventral anterior nucleus of thalamus", - "magnocellular part", - "magnocellular part of the ventral anterior nucleus", - "magnocellular ventral anterior nucleus", - "nucleus lateropolaris (magnocellularis)", - "nucleus lateropolaris magnocellularis (Hassler)", - "nucleus rostralis lateralis situs perifascicularis", - "nucleus thalamicus ventral anterior", - "nucleus thalamicus ventralis anterior", - "nucleus ventralis anterior", - "pars magnocellularis", - "pars magnocellularis nuclei ventralis anterior thalami", - "VAMC", - "ventral anterior nucleus", - "ventral anterior thalamic nucleus", - "ventroanterior thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/magnocellularPreopticNucleus.jsonld b/instances/UBERONParcellation/magnocellularPreopticNucleus.jsonld deleted file mode 100644 index e4a878623..000000000 --- a/instances/UBERONParcellation/magnocellularPreopticNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/magnocellularPreopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Magnocellular preoptic nucleus' is a preoptic nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106476", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000248#magnocellular-preoptic-nucleus", - "name": "magnocellular preoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000248", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/mammillaryBody.jsonld b/instances/UBERONParcellation/mammillaryBody.jsonld deleted file mode 100644 index f9e513aed..000000000 --- a/instances/UBERONParcellation/mammillaryBody.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mammillaryBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mammillary body' is part of the medial zone of hypothalamus and posterior hypothalamic region.", - "description": "One of two hemispherical bulges on the base of the posterior hypothalamus (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 455).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106500", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002206#mammillary-body", - "name": "mammillary body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002206", - "synonym": [ - "corpora mamillaria", - "corpora mammillaria", - "corpus mamillare", - "corpus mamillaris", - "corpus mammillare", - "mamillary body", - "mammillary area", - "mmb" - ] -} diff --git a/instances/UBERONParcellation/mammillaryPeduncle.jsonld b/instances/UBERONParcellation/mammillaryPeduncle.jsonld deleted file mode 100644 index eb79e13a3..000000000 --- a/instances/UBERONParcellation/mammillaryPeduncle.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mammillaryPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mammillary peduncle' is a peduncle of diencephalon. It is part of the posterior hypothalamic region.", - "description": "White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106502", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002720#mammillary-peduncle-1", - "name": "mammillary peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002720", - "synonym": [ - "mammillary peduncle (Meynert)", - "mpe", - "peduncle of mammillary body", - "pedunculus corporis mamillaris", - "pedunculus corporis mammillaris" - ] -} diff --git a/instances/UBERONParcellation/mammillothalamicTractOfHypothalamus.jsonld b/instances/UBERONParcellation/mammillothalamicTractOfHypothalamus.jsonld deleted file mode 100644 index 7625bc72d..000000000 --- a/instances/UBERONParcellation/mammillothalamicTractOfHypothalamus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mammillothalamicTractOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mammillothalamic tract of hypothalamus' is a tract of diencephalon. It is part of the mammillary axonal complex.", - "description": "Part of mammillothalamic tract contained within the hypothalamus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106507", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002990#mammillothalamic-tract-of-hypothalamus-1", - "name": "mammillothalamic tract of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002990", - "synonym": [ - "fasciculus mamillothalamicus (hypothalami)", - "mammillothalamic tract of hypothalamus", - "mammillothalamic tract of the hypothalamus", - "mthh" - ] -} diff --git a/instances/UBERONParcellation/matrixCompartment.jsonld b/instances/UBERONParcellation/matrixCompartment.jsonld deleted file mode 100644 index c19f08931..000000000 --- a/instances/UBERONParcellation/matrixCompartment.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/matrixCompartment", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Matrix compartment' is a chemoarchitectural part of striatum.", - "description": "The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106569", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027368#matrix-compartment-1", - "name": "matrix compartment", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027368", - "synonym": [ - "matrix", - "matrix compartment", - "striatal matrix" - ] -} diff --git a/instances/UBERONParcellation/matrixCompartmentOfCaudateNucleus.jsonld b/instances/UBERONParcellation/matrixCompartmentOfCaudateNucleus.jsonld deleted file mode 100644 index 9d5656b10..000000000 --- a/instances/UBERONParcellation/matrixCompartmentOfCaudateNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/matrixCompartmentOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Matrix compartment of caudate nucleus' is a matrix compartment. It is part of the caudate nucleus.", - "description": "Matrix compartment located in the caudate nucleus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106568", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0029001#matrix-compartment-of-caudate-nucleus-1", - "name": "matrix compartment of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0029001", - "synonym": [ - "matrix compartment of caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/matrixCompartmentOfPutamen.jsonld b/instances/UBERONParcellation/matrixCompartmentOfPutamen.jsonld deleted file mode 100644 index ec4f58c5e..000000000 --- a/instances/UBERONParcellation/matrixCompartmentOfPutamen.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/matrixCompartmentOfPutamen", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Matrix compartment of putamen' is a matrix compartment. It is part of the putamen.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730490", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0029002#matrix-compartment-of-putamen", - "name": "matrix compartment of putamen", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0029002", - "synonym": null -} diff --git a/instances/UBERONParcellation/matrixPartOfHeadOfCaudateNucleus.jsonld b/instances/UBERONParcellation/matrixPartOfHeadOfCaudateNucleus.jsonld deleted file mode 100644 index ed8160242..000000000 --- a/instances/UBERONParcellation/matrixPartOfHeadOfCaudateNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/matrixPartOfHeadOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Matrix part of head of caudate nucleus' is a matrix compartment of caudate nucleus. It is part of the head of caudate nucleus.", - "description": "Matrix compartment located in the head of the caudate nucleus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106571", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027245#matrix-part-of-head-of-caudate-nucleus-1", - "name": "matrix part of head of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027245", - "synonym": [ - "matrix compartment of head of caudate nucleus", - "matrix part of head of caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/matrixPartOfTailOfCaudateNucleus.jsonld b/instances/UBERONParcellation/matrixPartOfTailOfCaudateNucleus.jsonld deleted file mode 100644 index 70c5df2d8..000000000 --- a/instances/UBERONParcellation/matrixPartOfTailOfCaudateNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/matrixPartOfTailOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Matrix part of tail of caudate nucleus' is a matrix compartment of caudate nucleus. It is part of the tail of caudate nucleus.", - "description": "Matrix compartment located in the tail of the caudate nucleus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106572", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027246#matrix-part-of-tail-of-caudate-nucleus-1", - "name": "matrix part of tail of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027246", - "synonym": [ - "matrix compartment of tail of caudate nucleus", - "matrix part of tail of caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/medialAccessoryOlive.jsonld b/instances/UBERONParcellation/medialAccessoryOlive.jsonld deleted file mode 100644 index 0c2da5271..000000000 --- a/instances/UBERONParcellation/medialAccessoryOlive.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialAccessoryOlive", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial accessory olive' is a regional part of brain. It is part of the inferior olivary complex.", - "description": "Regional part of the inferior olivary complex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106621", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014287#medial-accessory-olive-1", - "name": "medial accessory olive", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014287", - "synonym": [ - "MAO", - "medial accessory olive" - ] -} diff --git a/instances/UBERONParcellation/medialAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/medialAmygdaloidNucleus.jsonld deleted file mode 100644 index a33cfceab..000000000 --- a/instances/UBERONParcellation/medialAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial amygdaloid nucleus' is a telencephalic nucleus. It is part of the corticomedial nuclear complex.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736076", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002892#medial-amygdaloid-nucleus-1", - "name": "medial amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002892", - "synonym": null -} diff --git a/instances/UBERONParcellation/medialDorsalNucleusOfThalamus.jsonld b/instances/UBERONParcellation/medialDorsalNucleusOfThalamus.jsonld deleted file mode 100644 index 49b2f9a58..000000000 --- a/instances/UBERONParcellation/medialDorsalNucleusOfThalamus.jsonld +++ /dev/null @@ -1,41 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialDorsalNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial dorsal nucleus of thalamus' is a nucleus of dorsal thalamus.", - "description": "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the G\u00c3\u00b6ttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106636", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002739#medial-dorsal-nucleus", - "name": "medial dorsal nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002739", - "synonym": [ - "nucleus medialis dorsalis", - "nucleus dorsomedialis thalami", - "medial thalamic nucleus", - "mediodorsal thalamic nucleus", - "dorsomedial nucleus", - "medial thalamic nuclei", - "medial dorsal thalamic nucleus", - "mediodorsal nucleus", - "Mediodorsal thalamus", - "Dorsomedial nucleus of thalamus", - "Dorsomedial nuclear group", - "Dorsal medial nucleus of thalamus", - "Medial dorsal nucleus of thalamus", - "Medial nuclear group", - "Medial dorsal nucleus", - "mediodorsal nucleus of thalamus", - "medial nuclear group of thalamus", - "nucleus medialis dorsalis thalami", - "dorsal thalamus medial division", - "mediodorsal nucleus of the thalamus", - "nucleus mediodorsalis thalami", - "medial group of the dorsal thalamus", - "nucleus thalamicus mediodorsalis", - "nuclei mediales (thalami)", - "medial thalamic nuclear group", - "nucleus medialis dorsalis (Hassler)" - ] -} diff --git a/instances/UBERONParcellation/medialEntorhinalCortex.jsonld b/instances/UBERONParcellation/medialEntorhinalCortex.jsonld deleted file mode 100644 index 538022df7..000000000 --- a/instances/UBERONParcellation/medialEntorhinalCortex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialEntorhinalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial entorhinal cortex' is the medial subdivision of the entorhinal cortex.", - "description": "One of two subdivisions of the entorhinal cortex, located medially.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731986", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007224#medial-entorhinal-cortex", - "name": "medial entorhinal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007224", - "synonym": [ - "entorhinal area, medial part", - "MEC" - ] -} diff --git a/instances/UBERONParcellation/medialForebrainBundle.jsonld b/instances/UBERONParcellation/medialForebrainBundle.jsonld deleted file mode 100644 index 5ce46185e..000000000 --- a/instances/UBERONParcellation/medialForebrainBundle.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialForebrainBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial forebrain bundle' is a fasciculus of brain. It is part of the hypothalamus.", - "description": "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106640", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001910#medial-forebrain-bundle-1", - "name": "medial forebrain bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001910", - "synonym": [ - "fasciculus longitudinalis telencephali medialis", - "fasciculus medialis telencephali", - "fasciculus medialis telencephalicus", - "fasciculus prosencephalicus medialis", - "medial forebrain bundles", - "medial forebrain fasciculus", - "median forebrain bundle", - "mfb", - "telencephalic medial fasciculus" - ] -} diff --git a/instances/UBERONParcellation/medialGeniculateBody.jsonld b/instances/UBERONParcellation/medialGeniculateBody.jsonld deleted file mode 100644 index 1f2f3c3af..000000000 --- a/instances/UBERONParcellation/medialGeniculateBody.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial geniculate body' is a nuclear complex of neuraxis and gray matter of diencephalon. It is part of the metathalamus.", - "description": "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106641", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001927#medial-geniculate-body-1", - "name": "medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001927", - "synonym": [ - "corpus geniculatum mediale", - "corpus geniculatus medialis", - "internal geniculate body", - "medial geniculate complex", - "medial geniculate complex of dorsal thalamus", - "medial geniculate nuclei", - "medial geniculate nucleus", - "MGB", - "MGN", - "nuclei corporis geniculati medialis", - "nucleus corporis geniculati medialis", - "nucleus geniculatus medialis" - ] -} diff --git a/instances/UBERONParcellation/medialGlobusPallidus.jsonld b/instances/UBERONParcellation/medialGlobusPallidus.jsonld deleted file mode 100644 index 68645b92f..000000000 --- a/instances/UBERONParcellation/medialGlobusPallidus.jsonld +++ /dev/null @@ -1,48 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialGlobusPallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial globus pallidus' is a cerebral hemisphere gray matter. It is part of the globus pallidus.", - "description": "The more medial segment of the globus pallidus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104660", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002477#globus-pallidus-internal-segment", - "name": "medial globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002477", - "synonym": [ - "entopeduncular nucleus", - "Entopeduncular nucleus (Monakow)", - "globus pallidus", - "globus pallidus inernal segment", - "globus pallidus interna", - "globus pallidus internal segment", - "globus pallidus internus", - "globus pallidus medial part", - "globus pallidus medial segment", - "globus pallidus medialis", - "globus pallidus pars medialis", - "Gpi", - "internal globus pallidus", - "internal pallidum", - "internal part of globus pallidus", - "internal segment", - "medial division of globus pallidus", - "medial globus pallidus (entopeduncular nucleus)", - "medial pallidal segment", - "medial part", - "medial part of globus pallidus", - "medial segment", - "medial segment of globus pallidus", - "medial segment of the globus pallidus", - "mesial pallidum", - "nucleus medialis globi pallidi", - "pallidum dorsal region internal segment", - "pallidum I", - "pallidum II", - "Pallidus I", - "pars interna", - "pars medialis globi pallidi", - "principal medial geniculate nucleus" - ] -} diff --git a/instances/UBERONParcellation/medialLemniscusOfMedulla.jsonld b/instances/UBERONParcellation/medialLemniscusOfMedulla.jsonld deleted file mode 100644 index 8a70126cf..000000000 --- a/instances/UBERONParcellation/medialLemniscusOfMedulla.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialLemniscusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial lemniscus of medulla' is a nervous system lemniscus. It is part of the medulla oblongata and medial lemniscus.", - "description": "Part of medial lemniscus located within the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106652", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002748#medial-lemniscus-of-medulla-1", - "name": "medial lemniscus of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002748", - "synonym": [ - "lemniscus medialis (myelencephali)", - "medial lemniscus of the medulla", - "medulla medial lemniscus" - ] -} diff --git a/instances/UBERONParcellation/medialLemniscusOfMidbrain.jsonld b/instances/UBERONParcellation/medialLemniscusOfMidbrain.jsonld deleted file mode 100644 index 9d4d907fa..000000000 --- a/instances/UBERONParcellation/medialLemniscusOfMidbrain.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialLemniscusOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial lemniscus of midbrain' is a nervous system lemniscus. It is part of the midbrain tegmentum, cerebral peduncle and medial lemniscus.", - "description": "Part of medial lemniscus located within the midbrain", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106653", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002658#medial-lemniscus-of-midbrain-1", - "name": "medial lemniscus of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002658", - "synonym": [ - "lemniscus medialis (mesencephali)", - "medial lemniscus of the midbrain", - "midbrain medial lemniscus", - "mlmb" - ] -} diff --git a/instances/UBERONParcellation/medialLemniscusOfPons.jsonld b/instances/UBERONParcellation/medialLemniscusOfPons.jsonld deleted file mode 100644 index 028314988..000000000 --- a/instances/UBERONParcellation/medialLemniscusOfPons.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialLemniscusOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial lemniscus of pons' is a nervous system lemniscus. It is part of the medial lemniscus and pontine tegmentum.", - "description": "Part of medial lemniscus located within the pons", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106654", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002958#medial-lemniscus-of-pons-1", - "name": "medial lemniscus of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002958", - "synonym": [ - "lemniscus medial", - "lemniscus medialis (pontis)", - "medial lemniscus of pons of varolius", - "medial lemniscus of the pons", - "pons medial lemniscus", - "pons of varolius medial lemniscus" - ] -} diff --git a/instances/UBERONParcellation/medialLongitudinalFasciculus.jsonld b/instances/UBERONParcellation/medialLongitudinalFasciculus.jsonld deleted file mode 100644 index 5f070b233..000000000 --- a/instances/UBERONParcellation/medialLongitudinalFasciculus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialLongitudinalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial longitudinal fasciculus' is a fasciculus of brain.", - "description": "Fiber bundle running longitudinally along the midline in the midbrain, pons and medulla, containing fibers that interconnect the cranial nerve nuclei controlling eye movements (Heimer, L. The Human Brain, 2nd ed., 1995, pg. 245)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106655", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002309#medial-longitudinal-fasciculus", - "name": "medial longitudinal fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002309", - "synonym": [ - "fasciculus longitudinalis medialis", - "medial longitudinal fascicle", - "MLF" - ] -} diff --git a/instances/UBERONParcellation/medialLongitudinalFasciculusOfMedulla.jsonld b/instances/UBERONParcellation/medialLongitudinalFasciculusOfMedulla.jsonld deleted file mode 100644 index d0c1b261d..000000000 --- a/instances/UBERONParcellation/medialLongitudinalFasciculusOfMedulla.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialLongitudinalFasciculusOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition].", - "description": "'Medial longitudinal fasciculus of medulla' is a medial longitudinal fasciculus. 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It is part of the globus pallidus.", - "description": "Thin sheet of white matter dividing the external and internal segments of the globus pallidus in primates", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106664", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002727#medial-medullary-lamina", - "name": "medial medullary lamina of globus pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002727", - "synonym": [ - "globus pallidus", - "inner medullary lamina", - "internal medullary l. of corpus striatum", - "internal medullary lamina of corpus striatum", - "internal medullary lamina of globus pallidus", - "internal medullary lamina of lentiform nucleus", - "internal medullary lamina of pallidum", - "l. medullaris interna corporis striati", - "lamella pallidi interna", - "lamina medullaris interna", - "lamina medullaris interna corporis striati", - "lamina medullaris interna pallidi", - "lamina medullaris medialis", - "lamina medullaris medialis corporis striati", - "lamina pallidi interna", - "medial medullary lamina", - "medial medullary lamina of corpus striatum", - "medial medullary lamina of globus pallidus", - "medial medullary lamina of pallidum", - "medial medullary lamina of the globus pallidus", - "medial medullary stria", - "medial medullary stria of corpus striatum", - "mml" - ] -} diff --git a/instances/UBERONParcellation/medialNucleusOfStriaTerminalis.jsonld b/instances/UBERONParcellation/medialNucleusOfStriaTerminalis.jsonld deleted file mode 100644 index 11011d0f2..000000000 --- a/instances/UBERONParcellation/medialNucleusOfStriaTerminalis.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialNucleusOfStriaTerminalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial nucleus of stria terminalis' is a telencephalic nucleus. It is part of the bed nucleus of stria terminalis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106667", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034895#medial-nucleus-of-stria-terminalis", - "name": "medial nucleus of stria terminalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034895", - "synonym": [ - "BSTM", - "medial bed nucleus of stria terminalis", - "medial bed nucleus of the stria terminalis", - "medial subdivision of BNST" - ] -} diff --git a/instances/UBERONParcellation/medialNucleusOfTrapezoidBody.jsonld b/instances/UBERONParcellation/medialNucleusOfTrapezoidBody.jsonld deleted file mode 100644 index 8900f9f5e..000000000 --- a/instances/UBERONParcellation/medialNucleusOfTrapezoidBody.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialNucleusOfTrapezoidBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial nucleus of trapezoid body' is a nucleus of trapezoid body. It is part of the primary superior olive.", - "description": "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. 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It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106670", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002975#medial-oculomotor-nucleus-1", - "name": "medial oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002975", - "synonym": [ - "M3", - "medial nucleus of oculomotor nuclear complex", - "medial oculomotor cell column", - "nucleus nervi oculomotorii", - "pars medialis" - ] -} diff --git a/instances/UBERONParcellation/medialOlfactoryGyrus.jsonld b/instances/UBERONParcellation/medialOlfactoryGyrus.jsonld deleted file mode 100644 index 334216dc5..000000000 --- a/instances/UBERONParcellation/medialOlfactoryGyrus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialOlfactoryGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial olfactory gyrus' is a gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106671", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002599#medial-olfactory-gyrus-1", - "name": "medial olfactory gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002599", - "synonym": [ - "gyrus medius olfactorius", - "gyrus olfactorius medialis" - ] -} diff --git a/instances/UBERONParcellation/medialOrbitalFrontalCortex.jsonld b/instances/UBERONParcellation/medialOrbitalFrontalCortex.jsonld deleted file mode 100644 index 6d01a580f..000000000 --- a/instances/UBERONParcellation/medialOrbitalFrontalCortex.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialOrbitalFrontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial orbital frontal cortex' is a regional part of brain. It is part of the orbitofrontal cortex.", - "description": "Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106672", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022352#medial-orbital-frontal-cortex-1", - "name": "medial orbital frontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022352", - "synonym": [ - "cortex of medial frontal gyrus", - "frontal medial cortex", - "medial orbitofrontal cortex" - ] -} diff --git a/instances/UBERONParcellation/medialOrbitalGyrus.jsonld b/instances/UBERONParcellation/medialOrbitalGyrus.jsonld deleted file mode 100644 index d3c8cbcae..000000000 --- a/instances/UBERONParcellation/medialOrbitalGyrus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialOrbitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial orbital gyrus' is an orbital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106673", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002570#medial-orbital-gyrus-1", - "name": "medial orbital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002570", - "synonym": [ - "gyrus orbitalis longitudinalis internus", - "gyrus orbitalis medialis", - "gyrus orbitalis medius" - ] -} diff --git a/instances/UBERONParcellation/medialParabrachialNucleus.jsonld b/instances/UBERONParcellation/medialParabrachialNucleus.jsonld deleted file mode 100644 index e3db80efe..000000000 --- a/instances/UBERONParcellation/medialParabrachialNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialParabrachialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial parabrachial nucleus' is a parabrachial nucleus. It is part of the pontine tegmentum.", - "description": "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106675", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002918#medial-parabrachial-nucleus-1", - "name": "medial parabrachial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002918", - "synonym": [ - "medial division", - "medial part", - "nucleus parabrachialis medialis", - "parabrachial nucleus" - ] -} diff --git a/instances/UBERONParcellation/medialPartOfBasalAmygdaloidNucleus.jsonld b/instances/UBERONParcellation/medialPartOfBasalAmygdaloidNucleus.jsonld deleted file mode 100644 index 8b7aba7b5..000000000 --- a/instances/UBERONParcellation/medialPartOfBasalAmygdaloidNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPartOfBasalAmygdaloidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial part of basal amygdaloid nucleus' is a cerebral hemisphere gray matter. It is part of the basal amygdaloid nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106676", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002889#medial-part-of-basal-amygdaloid-nucleus-1", - "name": "medial part of basal amygdaloid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002889", - "synonym": [ - "anterior part", - "BAM", - "basomedial amygdalar nucleus", - "basomedial amygdaloid nucleus", - "basomedial amygdaloid nucleus anterior part", - "basomedial amygdaloid nucleus anterior subdivision", - "medial basal nucleus of amygdala", - "medial division of basal nucleus", - "medial part of the basal amygdalar nucleus", - "medial part of the basolateral nucleus", - "nucleus amygdalae basalis", - "nucleus amygdalae basalis medialis", - "nucleus amygdaloideus basalis pars lateralis parvocellularis", - "nucleus basalis medialis amygdalae", - "pars medialis" - ] -} diff --git a/instances/UBERONParcellation/medialPartOfMedialMammillaryNucleus.jsonld b/instances/UBERONParcellation/medialPartOfMedialMammillaryNucleus.jsonld deleted file mode 100644 index c1a67cb38..000000000 --- a/instances/UBERONParcellation/medialPartOfMedialMammillaryNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPartOfMedialMammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial part of medial mammillary nucleus' is a gray matter of diencephalon. It is part of the medial mammillary nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106677", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002632#medial-part-of-medial-mammillary-nucleus-1", - "name": "medial part of medial mammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002632", - "synonym": [ - "medial mamillary nucleus", - "medial mammillary nucleus", - "medial mammillary nucleus (carpenter)", - "medial mammillary nucleus median part", - "medial part", - "medial part of the medial mammillary nucleus", - "medial subdivision of medial mammillary nucleus", - "median part", - "MML", - "nucleus corporis mamillaris medialis", - "nucleus medialis corpus mamillaris (Shantha)", - "pars medialis" - ] -} diff --git a/instances/UBERONParcellation/medialPartOfVentralLateralNucleus.jsonld b/instances/UBERONParcellation/medialPartOfVentralLateralNucleus.jsonld deleted file mode 100644 index 727a74f9d..000000000 --- a/instances/UBERONParcellation/medialPartOfVentralLateralNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPartOfVentralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial part of ventral lateral nucleus' is a gray matter of diencephalon. It is part of the ventral lateral nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106680", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002614#medial-part-of-ventral-lateral-nucleus-1", - "name": "medial part of ventral lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002614", - "synonym": [ - "medial part", - "medial part of the ventral lateral nucleus", - "nucleus ventralis lateralis", - "nucleus ventralis lateralis thalami", - "nucleus ventrooralis medialis (Hassler)", - "pars medialis", - "ventral lateral nucleus", - "ventral medial nucleus", - "ventral medial nucleus of thalamus", - "ventral medial nucleus of the thalamus", - "ventromedial nucleus of thalamus", - "ventromedial nucleus of the thalamus", - "ventromedial thalamic nucleus", - "VLM", - "vMp (Macchi)" - ] -} diff --git a/instances/UBERONParcellation/medialPericuneateNucleus.jsonld b/instances/UBERONParcellation/medialPericuneateNucleus.jsonld deleted file mode 100644 index bdf428bb2..000000000 --- a/instances/UBERONParcellation/medialPericuneateNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPericuneateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial pericuneate nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106681", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002875#medial-pericuneate-nucleus-1", - "name": "medial pericuneate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002875", - "synonym": [ - "MPCu", - "nucleus pericuneatus medialis" - ] -} diff --git a/instances/UBERONParcellation/medialPesLemniscus.jsonld b/instances/UBERONParcellation/medialPesLemniscus.jsonld deleted file mode 100644 index dfdddb810..000000000 --- a/instances/UBERONParcellation/medialPesLemniscus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPesLemniscus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial pes lemniscus' is a brainstem white matter and white matter of midbrain. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106682", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002662#medial-pes-lemniscus-1", - "name": "medial pes lemniscus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002662", - "synonym": [ - "mpl", - "pes lemniscus medialis", - "superficial pes lemniscus" - ] -} diff --git a/instances/UBERONParcellation/medialPreopticNucleus.jsonld b/instances/UBERONParcellation/medialPreopticNucleus.jsonld deleted file mode 100644 index 4ec05ec5d..000000000 --- a/instances/UBERONParcellation/medialPreopticNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPreopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial preoptic nucleus' is a hypothalamic nucleus and preoptic nucleus. It is part of the medial preoptic region.", - "description": "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106687", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002035#medial-preoptic-nucleus-1", - "name": "medial preoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002035", - "synonym": [ - "area praeoptica medialis", - "area preopticus medialis", - "medial preoptic area", - "medial preoptic hypothalamic nucleus", - "MPO", - "nucleus praeopticus medialis", - "nucleus preopticus medialis" - ] -} diff --git a/instances/UBERONParcellation/medialPulvinarNucleus.jsonld b/instances/UBERONParcellation/medialPulvinarNucleus.jsonld deleted file mode 100644 index 84144553c..000000000 --- a/instances/UBERONParcellation/medialPulvinarNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialPulvinarNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial pulvinar nucleus' is a nucleus of dorsal thalamus. It is part of the pulvinar nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106695", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002638#medial-pulvinar-nucleus-1", - "name": "medial pulvinar nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002638", - "synonym": [ - "MPul", - "nucleus pulvinaris medialis", - "nucleus pulvinaris medialis thalami", - "nucleus pulvinaris thalami", - "pars medialis" - ] -} diff --git a/instances/UBERONParcellation/medialSeptalNucleus.jsonld b/instances/UBERONParcellation/medialSeptalNucleus.jsonld deleted file mode 100644 index 7c5ff81dd..000000000 --- a/instances/UBERONParcellation/medialSeptalNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialSeptalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial septal nucleus' is a telencephalic nucleus. It is part of the medial septal complex.", - "description": "Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106697", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001877#medial-septal-nucleus-1", - "name": "medial septal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001877", - "synonym": [ - "medial parolfactory nucleus", - "medial septal nucleus (Cajal)", - "medial septum", - "medial septum nucleus", - "MS", - "n. septi medialis", - "nucleus medialis septi", - "nucleus septalis medialis" - ] -} diff --git a/instances/UBERONParcellation/medialSubnucleusOfSolitaryTract.jsonld b/instances/UBERONParcellation/medialSubnucleusOfSolitaryTract.jsonld deleted file mode 100644 index 293adb618..000000000 --- a/instances/UBERONParcellation/medialSubnucleusOfSolitaryTract.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialSubnucleusOfSolitaryTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial subnucleus of solitary tract' is a nucleus of solitary tract.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106701", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023390#medial-subnucleus-of-solitary-tract-1", - "name": "medial subnucleus of solitary tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023390", - "synonym": [ - "left", - "medial part", - "medial subnucleus", - "medial subnucleus of solitary tract", - "medial subnucleus of the solitary tract", - "meidal subnucleus", - "MSol", - "nucleus of the solitary tract", - "solitary nucleus" - ] -} diff --git a/instances/UBERONParcellation/medialSuperiorOlivaryNucleus.jsonld b/instances/UBERONParcellation/medialSuperiorOlivaryNucleus.jsonld deleted file mode 100644 index 6f310ae50..000000000 --- a/instances/UBERONParcellation/medialSuperiorOlivaryNucleus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialSuperiorOlivaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial superior olivary nucleus' is a nucleus of superior olivary complex. It is part of the primary superior olive.", - "description": "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106704", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002782#medial-superior-olivary-nucleus-1", - "name": "medial superior olivary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002782", - "synonym": [ - "chief nucleus of superior olive", - "chief superior olivary nucleus", - "main superior olivary nucleus", - "medial part", - "medial superior olive", - "MSO", - "nucleus laminaris", - "nucleus olivaris superior medialis", - "principal superior olivary nucleus", - "superior olivary complex", - "superior olivary nucleus", - "superior olive medial part", - "superior paraolivary nucleus", - "superior parolivary nucleus" - ] -} diff --git a/instances/UBERONParcellation/medialTransverseFrontopolarGyrus.jsonld b/instances/UBERONParcellation/medialTransverseFrontopolarGyrus.jsonld deleted file mode 100644 index 3f0775125..000000000 --- a/instances/UBERONParcellation/medialTransverseFrontopolarGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialTransverseFrontopolarGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial transverse frontopolar gyrus' is a regional part of brain. It is part of the transverse frontopolar gyri complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106708", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024193#medial-transverse-frontopolar-gyrus-1", - "name": "medial transverse frontopolar gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024193", - "synonym": [ - "medial transverse frontopolar gyrus" - ] -} diff --git a/instances/UBERONParcellation/medialVentralTegmentalArea.jsonld b/instances/UBERONParcellation/medialVentralTegmentalArea.jsonld deleted file mode 100644 index 4b19765e6..000000000 --- a/instances/UBERONParcellation/medialVentralTegmentalArea.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialVentralTegmentalArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial ventral tegmental area' is a regional part of brain. It is part of the ventral tegmental area.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106709", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023865#medial-ventral-tegmental-area-1", - "name": "medial ventral tegmental area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023865", - "synonym": [ - "medial ventral tegmental area" - ] -} diff --git a/instances/UBERONParcellation/medialVestibularNucleus.jsonld b/instances/UBERONParcellation/medialVestibularNucleus.jsonld deleted file mode 100644 index 55f129586..000000000 --- a/instances/UBERONParcellation/medialVestibularNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medialVestibularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medial vestibular nucleus' is a vestibular nucleus.", - "description": "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106710", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001722#medial-vestibular-nucleus", - "name": "medial vestibular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001722", - "synonym": [ - "chief vestibular nucleus", - "dorsal vestibular nucleus", - "medial nucleus", - "nucleus of Schwalbe", - "nucleus triangularis", - "nucleus vestibularis medialis", - "principal vestibular nucleus", - "Schwalbe's nucleus", - "triangular nucleus" - ] -} diff --git a/instances/UBERONParcellation/medianEminenceOfNeurohypophysis.jsonld b/instances/UBERONParcellation/medianEminenceOfNeurohypophysis.jsonld deleted file mode 100644 index 8526ca44e..000000000 --- a/instances/UBERONParcellation/medianEminenceOfNeurohypophysis.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medianEminenceOfNeurohypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Median eminence of neurohypophysis' is a gland of diencephalon and secretory circumventricular organ. It is part of the neurohypophysis.", - "description": "Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106712", - "knowledgeSpaceLink": null, - "name": "median eminence of neurohypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002197", - "synonym": null -} diff --git a/instances/UBERONParcellation/medianNerve.jsonld b/instances/UBERONParcellation/medianNerve.jsonld deleted file mode 100644 index 209daff7d..000000000 --- a/instances/UBERONParcellation/medianNerve.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medianNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'median nerve' is a nerve of the arm. It originates from the brachial plexus.", - "description": "A nerve of the arm that originates from the brachial plexus and is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 and T1.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729472", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001148#median-nerve", - "name": "median nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001148", - "synonym": [ - "nervus medianus" - ] -} diff --git a/instances/UBERONParcellation/medianPreopticNucleus.jsonld b/instances/UBERONParcellation/medianPreopticNucleus.jsonld deleted file mode 100644 index 4ac923738..000000000 --- a/instances/UBERONParcellation/medianPreopticNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medianPreopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Median preoptic nucleus' is a preoptic nucleus.", - "description": "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106717", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002625#median-preoptic-nucleus-1", - "name": "median preoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002625", - "synonym": [ - "medial preoptic area", - "median preoptic nucleus (Loo)", - "MnPO", - "nucleus praeopticus medianus", - "nucleus preopticus medianus", - "periventricular nucleus", - "preventricular portion" - ] -} diff --git a/instances/UBERONParcellation/medianRapheNucleus.jsonld b/instances/UBERONParcellation/medianRapheNucleus.jsonld deleted file mode 100644 index 3a12c5797..000000000 --- a/instances/UBERONParcellation/medianRapheNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medianRapheNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A large cell serotonergic raphe nucleus in the upper pons and lower mesencephalon that is part of the reticular formation", - "description": "'Median raphe nucleus' is a nucleus of midbrain reticular formation. It is part of the raphe nuclei.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111276", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003004#superior-central-nucleus", - "name": "median raphe nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003004", - "synonym": [ - "Cell group B8", - "medial raphe nucleus", - "median nucleus of the raphe", - "median raphe nucleus", - "MRN", - "nucleus centralis superior", - "nucleus raphes medianus", - "superior central nucleus", - "superior central nucleus raphe", - "superior central tegmental nucleus" - ] -} diff --git a/instances/UBERONParcellation/medullaOblongata.jsonld b/instances/UBERONParcellation/medullaOblongata.jsonld deleted file mode 100644 index 109230c91..000000000 --- a/instances/UBERONParcellation/medullaOblongata.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medullaOblongata", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medulla oblongata' is part of the brainstem and myelencephalon.", - "description": "The lower portion of the hindbrain and brainstem located between the pons and spinal cord. This structure contains several descending and ascending tracts, lower cranial nerve nuclei, a significant proportion of the reticular system of the brainstem and other structures (adapted from NCI Thesaurus).The topographic division of the cerebrospinal axis between pons and spinal cord. It was clearly described and illustrated for macrodissected adult humans by Piccolomini (1586, pp. 265, 269; his intracranial medulla oblongata), while the term medulla was used by Winslow (1733, Sect. X, p. 42) and Haller (1747, see translation by Mihles, 1754, pp. 287, 286), and more recently in the classic textbooks of for example Mettler (1948, p. 76) and Carpenter (1976, p. 60).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106736", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001896#medulla-oblongata-1", - "name": "medulla oblongata", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001896", - "synonym": [ - "Afterbrain", - "Bulb", - "bulbus", - "Epencephalon", - "medulla", - "medulla oblonzata", - "Metencephalon", - "metepencephalon" - ] -} diff --git a/instances/UBERONParcellation/medullaryAnteriorHorn.jsonld b/instances/UBERONParcellation/medullaryAnteriorHorn.jsonld deleted file mode 100644 index a93e8a80f..000000000 --- a/instances/UBERONParcellation/medullaryAnteriorHorn.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medullaryAnteriorHorn", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medullary anterior horn' is a gray matter of hindbrain. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106740", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023378#medullary-anterior-horn-1", - "name": "medullary anterior horn", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023378", - "synonym": [ - "cornu anterius medullaris", - "MAH", - "medullary anterior horn" - ] -} diff --git a/instances/UBERONParcellation/medullaryRapheNuclearComplex.jsonld b/instances/UBERONParcellation/medullaryRapheNuclearComplex.jsonld deleted file mode 100644 index 37f2eef1a..000000000 --- a/instances/UBERONParcellation/medullaryRapheNuclearComplex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medullaryRapheNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medullary raphe nuclear complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata and raphe nuclei.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106743", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002692#medullary-raphe-nuclear-complex-1", - "name": "medullary raphe nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002692", - "synonym": [ - "nuclei raphe (myelencephali)", - "raphe medullae oblongatae", - "raphe nuclei of medulla", - "raphe nuclei of the medulla", - "raphe of medulla oblongata" - ] -} diff --git a/instances/UBERONParcellation/medullaryReticularFormation.jsonld b/instances/UBERONParcellation/medullaryReticularFormation.jsonld deleted file mode 100644 index 8b9ebd26e..000000000 --- a/instances/UBERONParcellation/medullaryReticularFormation.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medullaryReticularFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medullary reticular formation' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata and reticular formation.", - "description": "Part of reticular formation located in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106744", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002559#medullary-reticular-formation-1", - "name": "medullary reticular formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002559", - "synonym": [ - "bulb reticular formation", - "bulbar reticular formation", - "formatio reticularis myelencephali", - "medulla oblongata reticular formation", - "medulla oblonmgata reticular formation", - "medullary reticular nucleus", - "metepencephalon reticular formation", - "reticular formation", - "reticular formation of bulb", - "reticular formation of medulla", - "reticular formation of medulla oblongata", - "reticular formation of medulla oblonmgata", - "reticular formation of metepencephalon", - "rhombencephalic reticular formation" - ] -} diff --git a/instances/UBERONParcellation/meninxOfHindbrain.jsonld b/instances/UBERONParcellation/meninxOfHindbrain.jsonld deleted file mode 100644 index b07a45670..000000000 --- a/instances/UBERONParcellation/meninxOfHindbrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/meninxOfHindbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Meninx of hindbrain' is a brain meninx. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736366", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003291#meninx-of-hindbrain", - "name": "meninx of hindbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003291", - "synonym": null -} diff --git a/instances/UBERONParcellation/mesencephalicNucleusOfTrigeminalNerve.jsonld b/instances/UBERONParcellation/mesencephalicNucleusOfTrigeminalNerve.jsonld deleted file mode 100644 index ec530db92..000000000 --- a/instances/UBERONParcellation/mesencephalicNucleusOfTrigeminalNerve.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesencephalicNucleusOfTrigeminalNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mesencephalic nucleus of trigeminal nerve' is a trigeminal sensory nucleus, brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106812", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001718#mesencephalic-nucleus-of-trigeminal-nerve-1", - "name": "mesencephalic nucleus of trigeminal nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001718", - "synonym": [ - "Me5", - "mesencephalic nuclei of trigeminal nerves", - "mesencephalic nucleus", - "mesencephalic nucleus of the trigeminal", - "mesencephalic nucleus of the trigeminal nerve", - "mesencephalic trigeminal nucleus", - "mesencephalic trigeminal V nucleus", - "midbrain trigeminal nucleus", - "nucleus mesencephalicus nervi trigeminalis", - "nucleus mesencephalicus nervi trigemini", - "Nucleus of mesencephalic root of V", - "nucleus tractus mesencephalici nervi trigemini", - "nucleus tractus mesencephalicus nervi trigemini", - "trigeminal mesencephalic nucleus", - "trigeminal nerve mesencepahlic nucleus", - "trigeminal V mesencephalic nucleus" - ] -} diff --git a/instances/UBERONParcellation/mesencephalicTractOfTrigeminalNerve.jsonld b/instances/UBERONParcellation/mesencephalicTractOfTrigeminalNerve.jsonld deleted file mode 100644 index f54de56bb..000000000 --- a/instances/UBERONParcellation/mesencephalicTractOfTrigeminalNerve.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesencephalicTractOfTrigeminalNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mesencephalic tract of trigeminal nerve' is a tract of brain. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106813", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002666#mesencephalic-tract-of-trigeminal-nerve-1", - "name": "mesencephalic tract of trigeminal nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002666", - "synonym": [ - "me5", - "Mesencephalic root of V", - "mesencephalic tract of the trigeminal nerve", - "mesencephalic trigeminal tract", - "midbrain tract of the trigeminal nerve", - "tractus mesencephalicus nervi trigeminalis", - "tractus mesencephalicus nervi trigemini", - "tractus mesencephalicus trigeminalis" - ] -} diff --git a/instances/UBERONParcellation/metathalamus.jsonld b/instances/UBERONParcellation/metathalamus.jsonld deleted file mode 100644 index ab378a237..000000000 --- a/instances/UBERONParcellation/metathalamus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/metathalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Metathalamus' is a nucleus of dorsal thalamus.", - "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106839", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002704#metathalamus-1", - "name": "metathalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002704", - "synonym": [ - "corpora geniculata", - "geniculate group of dorsal thalamus", - "geniculate group of the dorsal thalamus", - "geniculate thalamic group", - "geniculate thalamic nuclear group (metathalamus)", - "MTh", - "nuclei metathalami" - ] -} diff --git a/instances/UBERONParcellation/metencephalon.jsonld b/instances/UBERONParcellation/metencephalon.jsonld deleted file mode 100644 index 7f856ed40..000000000 --- a/instances/UBERONParcellation/metencephalon.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/metencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Metencephalon' is a segmental subdivision of hindbrain.", - "description": "Anterior part of the hindbrain ventral to the cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106845", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001895#metencephalon-1", - "name": "metencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001895", - "synonym": [ - "Epencephalon-2", - "epencephalon" - ] -} diff --git a/instances/UBERONParcellation/metencephalonSulcusLimitans.jsonld b/instances/UBERONParcellation/metencephalonSulcusLimitans.jsonld deleted file mode 100644 index de62bcdf5..000000000 --- a/instances/UBERONParcellation/metencephalonSulcusLimitans.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/metencephalonSulcusLimitans", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Metencephalon sulcus limitans' is part of the future metencephalon.", - "description": "A sulcus limitans of neural tube that is part of a future metencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729292", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009577#metencephalon-sulcus-limitans", - "name": "metencephalon sulcus limitans", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009577", - "synonym": null -} diff --git a/instances/UBERONParcellation/midbrain.jsonld b/instances/UBERONParcellation/midbrain.jsonld deleted file mode 100644 index 358259616..000000000 --- a/instances/UBERONParcellation/midbrain.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain' is a regional part of brain.", - "description": "Part of the brain that develops from the middle of the 3 primary vesicles of the embryonic neural tube, between the prosencephalon and rhombencephalon, later forming the tectum and cerebral peduncles. (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106935", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001891#midbrain-1", - "name": "midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001891", - "synonym": [ - "MB", - "Mesencephalon" - ] -} diff --git a/instances/UBERONParcellation/midbrainCerebralAqueduct.jsonld b/instances/UBERONParcellation/midbrainCerebralAqueduct.jsonld deleted file mode 100644 index 088b04d1c..000000000 --- a/instances/UBERONParcellation/midbrainCerebralAqueduct.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainCerebralAqueduct", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain cerebral aqueduct' is a brain ventricle. It is part of the midbrain.", - "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101977", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002289#cerebral-aqueduct", - "name": "midbrain cerebral aqueduct", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002289", - "synonym": [ - "aqueduct", - "Aqueduct (Sylvius)", - "aqueduct of midbrain", - "aqueduct of Sylvius", - "aqueductus mesencephali", - "cerebral aquaduct", - "cerebral aqueduct", - "Cerebral aqueduct of Sylvius", - "cerebral aqueduct proper", - "medial tectal ventricle", - "mesencephalic duct", - "mesencephalic ventricle", - "mesencephalic vesicle", - "midbrain cerebral aqueduct", - "midbrain ventricle", - "Sylvian aqueduct", - "tectal ventricle" - ] -} diff --git a/instances/UBERONParcellation/midbrainRapheNuclei.jsonld b/instances/UBERONParcellation/midbrainRapheNuclei.jsonld deleted file mode 100644 index 7c68ddec0..000000000 --- a/instances/UBERONParcellation/midbrainRapheNuclei.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainRapheNuclei", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain raphe nuclei' is a regional part of brain. It is part of the midbrain tegmentum and raphe nuclei.", - "description": "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106941", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007412#midbrain-raphe-nuclei-1", - "name": "midbrain raphe nuclei", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007412", - "synonym": null -} diff --git a/instances/UBERONParcellation/midbrainReticularFormation.jsonld b/instances/UBERONParcellation/midbrainReticularFormation.jsonld deleted file mode 100644 index 0daeabfd1..000000000 --- a/instances/UBERONParcellation/midbrainReticularFormation.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainReticularFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain reticular formation' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum and reticular formation.", - "description": "Part of the reticular formation located in the midbrain tegmentum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106943", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002639#midbrain-reticular-formation-1", - "name": "midbrain reticular formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002639", - "synonym": [ - "formatio reticularis mesencephali", - "formatio reticularis tegmentalis", - "formatio reticularis tegmenti mesencephali", - "MBRF", - "reticular formation of midbrain", - "substantia reticularis mesencephali", - "tegmental reticular formation" - ] -} diff --git a/instances/UBERONParcellation/midbrainTectum.jsonld b/instances/UBERONParcellation/midbrainTectum.jsonld deleted file mode 100644 index 762cb1383..000000000 --- a/instances/UBERONParcellation/midbrainTectum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainTectum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain tectum' is a regional part of brain. It is part of the midbrain.", - "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).The dorsal topographic division of the midbrain, essentially dorsal to the cerebral aqueduct and dominated in mammals by the superior colliculi and inferior colliculi, and contrasting with the ventral topographic division, the tegmentum. Schwalbe (1881, p. 454) apparently introduced the term as currently used, \"Decke des Mittelhirns\" in the original German; also see Cajal (1899-1904, vol 2, pt 1, p. 449), \"el techo\" and \"la porci\u00c3\u00b3n tectal\" in the original Spanish. Also see Williams & Warwick (1980, p. 940), International Anatomical Nomenclature Committee (1983, p. A68), Federative Committee on Anatomical Terminology (1998, A14.1.06.601). Common synonym is corpora quadrigemina (Winslow, 1733).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106950", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002314#midbrain-tectum", - "name": "midbrain tectum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002314", - "synonym": [ - "Tec", - "tectum", - "Neuraxis tectum", - "mesencephalic tectum", - "tectum mesencephali", - "tectum mesencephalicum", - "tectum of midbrain", - "t. mesencephali" - ] -} diff --git a/instances/UBERONParcellation/midbrainTegmentum.jsonld b/instances/UBERONParcellation/midbrainTegmentum.jsonld deleted file mode 100644 index 293d05cd5..000000000 --- a/instances/UBERONParcellation/midbrainTegmentum.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainTegmentum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain tegmentum' is a regional part of brain. It is part of the midbrain and brainstem.", - "description": "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106951", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001943#midbrain-tegmentum-1", - "name": "midbrain tegmentum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001943", - "synonym": [ - "mesencephalic tegmentum", - "MTg", - "tegmentum", - "tegmentum mesencephali", - "tegmentum mesencephalicum", - "tegmentum of midbrain" - ] -} diff --git a/instances/UBERONParcellation/midbrainhindbrainBoundary.jsonld b/instances/UBERONParcellation/midbrainhindbrainBoundary.jsonld deleted file mode 100644 index c5a55825e..000000000 --- a/instances/UBERONParcellation/midbrainhindbrainBoundary.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainhindbrainBoundary", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain-hindbrain boundary' is part of the brain.", - "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728815", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003052#midbrain-hindbrain-boundary", - "name": "midbrain-hindbrain boundary", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003052", - "synonym": null -} diff --git a/instances/UBERONParcellation/middleCerebellarPeduncle.jsonld b/instances/UBERONParcellation/middleCerebellarPeduncle.jsonld deleted file mode 100644 index 6c7fa13b0..000000000 --- a/instances/UBERONParcellation/middleCerebellarPeduncle.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/middleCerebellarPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Middle cerebellar peduncle' is a cerebellar peduncle and white matter of pons. It is part of the basal part of pons.", - "description": "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106956", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002152#middle-cerebellar-peduncle-1", - "name": "middle cerebellar peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002152", - "synonym": [ - "brachium pontis", - "brachium pontis (stem of middle cerebellar peduncle)", - "crus cerebelli ad pontem", - "crus ponto-cerebellare", - "mcp", - "mid-cerebellar peduncle", - "pedunculus cerebellaris medialis", - "pedunculus cerebellaris medius", - "pedunculus cerebellaris pontinus" - ] -} diff --git a/instances/UBERONParcellation/middleFrontalGyrus.jsonld b/instances/UBERONParcellation/middleFrontalGyrus.jsonld deleted file mode 100644 index 1510cfa34..000000000 --- a/instances/UBERONParcellation/middleFrontalGyrus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/middleFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Middle frontal gyrus' is a frontal gyrus.", - "description": "Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106961", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002702#middle-frontal-gyrus-1", - "name": "middle frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002702", - "synonym": [ - "gyrus F2", - "gyrus frontalis medialis", - "gyrus frontalis medialis (Winters)", - "gyrus frontalis medius", - "gyrus frontalis secundus", - "intermediate frontal gyrus", - "medial frontal gyrus", - "medial frontal gyrus (Mai)", - "medial frontal gyrus x", - "middle (medial) frontal gyrus" - ] -} diff --git a/instances/UBERONParcellation/middleTemporalGyrus.jsonld b/instances/UBERONParcellation/middleTemporalGyrus.jsonld deleted file mode 100644 index 0cb971a72..000000000 --- a/instances/UBERONParcellation/middleTemporalGyrus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/middleTemporalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Middle temporal gyrus' is a gyrus. It is part of the temporal lobe.", - "description": "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106967", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002771#middle-temporal-gyrus-1", - "name": "middle temporal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002771", - "synonym": [ - "gyrus temporalis medius", - "inferior temporal gyrus (Seltzer)", - "intermediate temporal gyrus", - "medial temporal gyrus", - "middle (medial) temporal gyrus" - ] -} diff --git a/instances/UBERONParcellation/midlineNuclearGroup.jsonld b/instances/UBERONParcellation/midlineNuclearGroup.jsonld deleted file mode 100644 index 6ba22536a..000000000 --- a/instances/UBERONParcellation/midlineNuclearGroup.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midlineNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midline nuclear group' is a nucleus of dorsal thalamus.", - "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106971", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002705#midline-nuclear-group-1", - "name": "midline nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002705", - "synonym": [ - "median nuclei of thalamus", - "midline group of the dorsal thalamus", - "midline nuclear group", - "midline nuclear group of thalamus", - "midline nuclei of thalamus", - "midline thalamic group", - "midline thalamic nuclear group", - "midline thalamic nuclei", - "nuclei mediani (thalami)", - "nuclei mediani thalami", - "nucleus mediani thalami", - "periventricular nuclei of thalamus" - ] -} diff --git a/instances/UBERONParcellation/motorNucleusOfTrigeminalNerve.jsonld b/instances/UBERONParcellation/motorNucleusOfTrigeminalNerve.jsonld deleted file mode 100644 index 3aaeed7c4..000000000 --- a/instances/UBERONParcellation/motorNucleusOfTrigeminalNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/motorNucleusOfTrigeminalNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Motor nucleus of trigeminal nerve' is a trigeminal nucleus, brainstem nucleus and hindbrain nucleus. It is part of the pontine tegmentum.", - "description": "Nucleus located in the pontine tegmentum containing cells that give rise to motor innervation of the jaw through the trigeminal nerve. It receives both crossed and uncrossed fibers from the cerebral cortex (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1996, pg 248).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107124", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002633#motor-nucleus-of-trigeminal-nerve-1", - "name": "motor nucleus of trigeminal nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002633", - "synonym": null -} diff --git a/instances/UBERONParcellation/motorRootOfTrigeminalNerve.jsonld b/instances/UBERONParcellation/motorRootOfTrigeminalNerve.jsonld deleted file mode 100644 index cc228c625..000000000 --- a/instances/UBERONParcellation/motorRootOfTrigeminalNerve.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/motorRootOfTrigeminalNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Motor root of trigeminal nerve' is a trigeminal nerve root.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107128", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002796#motor-root-of-trigeminal-nerve-1", - "name": "motor root of trigeminal nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002796", - "synonym": [ - "dorsal motor root of v", - "dorsal motor roots of V", - "minor root of trigeminal nerve", - "motor branch of trigeminal nerve", - "motor root of N. V", - "motor root of nervus v", - "motor root of the trigeminal nerve", - "nervus trigemini radix motoria", - "nervus trigeminus", - "portio minor nervi trigemini", - "portio minor of trigeminal nerve", - "radix motoria", - "radix motoria (Nervus trigeminus [V])", - "radix motoria nervus trigemini", - "radix motorius" - ] -} diff --git a/instances/UBERONParcellation/mushroomBody.jsonld b/instances/UBERONParcellation/mushroomBody.jsonld deleted file mode 100644 index 3d64e582b..000000000 --- a/instances/UBERONParcellation/mushroomBody.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mushroomBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Mushroom body' is a material entity and anatomical entity. It is part of the brain.", - "description": "Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724282", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001058#mushroom-body", - "name": "mushroom body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001058", - "synonym": null -} diff --git a/instances/UBERONParcellation/myelencephalonSulcusLimitans.jsonld b/instances/UBERONParcellation/myelencephalonSulcusLimitans.jsonld deleted file mode 100644 index d0ad28aea..000000000 --- a/instances/UBERONParcellation/myelencephalonSulcusLimitans.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/myelencephalonSulcusLimitans", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Myelencephalon sulcus limitans' is part of the future myelencephalon.", - "description": "A sulcus limitans of neural tube that is part of a future myelencephalon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734752", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009578#myelencephalon-sulcus-limitans", - "name": "myelencephalon sulcus limitans", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009578", - "synonym": null -} diff --git a/instances/UBERONParcellation/neocortex.jsonld b/instances/UBERONParcellation/neocortex.jsonld deleted file mode 100644 index 88156537c..000000000 --- a/instances/UBERONParcellation/neocortex.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neocortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Neocortex' is a regional part of brain. It is part of the cerebral cortex.", - "description": "Part of cerebral cortex defined on the basis of cytoarchitecture that has six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83) (NN) * The largest portion of the CEREBRAL CORTEX. It is composed of NEURONS arranged in six layers. (MSH) * the newer, 6 layered portion of the cerebral cortex showing stratification and organization characteristic of the most highly evolved type of cerebral tissue. (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107350", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001950#neocortex-1", - "name": "neocortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001950", - "synonym": [ - "cerebral neocortex", - "homogenetic cortex", - "homotypical cortex", - "iso-cortex", - "isocortex", - "isocortex (sensu lato)", - "neocortex (isocortex)", - "neopallial cortex", - "neopallium", - "nonolfactory cortex", - "nucleus hypoglossalis" - ] -} diff --git a/instances/UBERONParcellation/neodentatePartOfDentateNucleus.jsonld b/instances/UBERONParcellation/neodentatePartOfDentateNucleus.jsonld deleted file mode 100644 index 2052608b2..000000000 --- a/instances/UBERONParcellation/neodentatePartOfDentateNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neodentatePartOfDentateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Neodentate part of dentate nucleus' is a gray matter of hindbrain. It is part of the dentate nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107392", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002747#neodentate-part-of-dentate-nucleus-1", - "name": "neodentate part of dentate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002747", - "synonym": [ - "NDt", - "neodentate portion of dentate nucleus", - "neodentate portion of the dentate nucleus", - "pars neodentata" - ] -} diff --git a/instances/UBERONParcellation/neuralLobeOfNeurohypophysis.jsonld b/instances/UBERONParcellation/neuralLobeOfNeurohypophysis.jsonld deleted file mode 100644 index 03cfeb3be..000000000 --- a/instances/UBERONParcellation/neuralLobeOfNeurohypophysis.jsonld +++ /dev/null @@ -1,42 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralLobeOfNeurohypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted].", - "description": "'Neural lobe of neurohypophysis' is a regional part of brain. It is part of the neurohypophysis.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108544", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003217#pars-nervosa-of-hypophysis", - "name": "neural lobe of neurohypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003217", - "synonym": [ - "caudal lobe", - "eminentia medialis (Shantha)", - "eminentia mediana", - "eminentia postinfundibularis", - "lobe caudalis cerebelli", - "lobus nervosus (Neurohypophysis)", - "medial eminence", - "middle lobe", - "neural component of pituitary", - "pars nervosa", - "pars nervosa (hypophysis)", - "pars nervosa (neurohypophysis)", - "pars nervosa neurohypophysis", - "pars nervosa of hypophysis", - "pars nervosa of neurohypophysis", - "pars nervosa of pituitary", - "pars nervosa of posterior lobe of pituitary gland", - "pars nervosa pituitary gland", - "pars posterior", - "pars posterior of hypophysis", - "pituitary gland", - "PNHP", - "posterior lobe", - "posterior lobe of neurohypophysis", - "posterior lobe of pituitary", - "posterior lobe-3", - "posterior pituitary" - ] -} diff --git a/instances/UBERONParcellation/neuralNucleus.jsonld b/instances/UBERONParcellation/neuralNucleus.jsonld deleted file mode 100644 index bcc90bcba..000000000 --- a/instances/UBERONParcellation/neuralNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Neural nucleus' is a central nervous system cell part cluster.", - "description": "A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107752", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000125#nucleus-of-cns", - "name": "neural nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000125", - "synonym": [ - "nervous system nucleus", - "neural nucleus", - "neuraxis nucleus", - "neuronal nucleus", - "nucleus", - "nucleus of CNS", - "nucleus of neuraxis" - ] -} diff --git a/instances/UBERONParcellation/neurohypophysis.jsonld b/instances/UBERONParcellation/neurohypophysis.jsonld deleted file mode 100644 index aa236111a..000000000 --- a/instances/UBERONParcellation/neurohypophysis.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neurohypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Neurohypophysis' is a gland of diencephalon and secretory circumventricular organ. It is part of the pituitary gland.", - "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107477", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002198#neurohypophysis-1", - "name": "neurohypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002198", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusAccumbens.jsonld b/instances/UBERONParcellation/nucleusAccumbens.jsonld deleted file mode 100644 index 42d2ee673..000000000 --- a/instances/UBERONParcellation/nucleusAccumbens.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusAccumbens", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus accumbens' is a telencephalic nucleus. It is part of the limbic system, cerebral hemisphere and ventral striatum.", - "description": "A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107736", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001882#nucleus-accumbens-1", - "name": "nucleus accumbens", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001882", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusAmbiguus.jsonld b/instances/UBERONParcellation/nucleusAmbiguus.jsonld deleted file mode 100644 index 4dc1c6906..000000000 --- a/instances/UBERONParcellation/nucleusAmbiguus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusAmbiguus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus ambiguus' is a nucleus of medulla oblongata and vagus nerve nucleus.", - "description": "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107738", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001719#nucleus-ambiguus-1", - "name": "nucleus ambiguus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001719", - "synonym": [ - "Amb", - "ambiguous nucleus", - "ambiguus nucleus", - "nucleus innominatus" - ] -} diff --git a/instances/UBERONParcellation/nucleusIncertus.jsonld b/instances/UBERONParcellation/nucleusIncertus.jsonld deleted file mode 100644 index 53af3d24e..000000000 --- a/instances/UBERONParcellation/nucleusIncertus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusIncertus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus incertus' is a brainstem nucleus and hindbrain nucleus. It is part of the pontine tegmentum.", - "description": "Distinct cell group in caudoventral regions of the pontine periventricular gray, adjacent to the ventromedial border of the caudal dorsal tegmental nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107746", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035973#nucleus-incertus", - "name": "nucleus incertus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035973", - "synonym": [ - "Central Gray pars 0", - "Central Gray pars beta (The rat brain in stereotaxic coordinates [electronic resource] / George Paxinos", - "Central Gray part alpha", - "CG0", - "CGalpha", - "CGbeta", - "charles Watson. - 5th ed.)", - "Inc", - "NI", - "nucleus incertus (Streeter)" - ] -} diff --git a/instances/UBERONParcellation/nucleusIntercalatus.jsonld b/instances/UBERONParcellation/nucleusIntercalatus.jsonld deleted file mode 100644 index c9674c369..000000000 --- a/instances/UBERONParcellation/nucleusIntercalatus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusIntercalatus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus intercalatus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107749", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002876#nucleus-intercalatus-1", - "name": "nucleus intercalatus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002876", - "synonym": [ - "In", - "intercalated nucleus", - "intercalated nucleus of medulla", - "intercalated nucleus of the medulla", - "nucleus intercalates", - "nucleus intercalatus (Staderini)", - "nucleus intercalatus of medulla", - "nucleus of Staderini", - "nucleus Staderini" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfAnteriorCommissure.jsonld b/instances/UBERONParcellation/nucleusOfAnteriorCommissure.jsonld deleted file mode 100644 index beb744255..000000000 --- a/instances/UBERONParcellation/nucleusOfAnteriorCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfAnteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of anterior commissure' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107751", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002933#nucleus-of-anterior-commissure-1", - "name": "nucleus of anterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002933", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusOfBrain.jsonld b/instances/UBERONParcellation/nucleusOfBrain.jsonld deleted file mode 100644 index a1542e4c3..000000000 --- a/instances/UBERONParcellation/nucleusOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of brain' is a neural nucleus. It is part of the brain gray matter.", - "description": "A neural nucleus that is part of the brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736730", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002308#nucleus-of-brain", - "name": "nucleus of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002308", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusOfCerebellarNuclearComplex.jsonld b/instances/UBERONParcellation/nucleusOfCerebellarNuclearComplex.jsonld deleted file mode 100644 index b407f7789..000000000 --- a/instances/UBERONParcellation/nucleusOfCerebellarNuclearComplex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfCerebellarNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of cerebellar nuclear complex' is a hindbrain nucleus. It is part of the cerebellar nuclear complex.", - "description": "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727858", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008995#nucleus-of-cerebellar-nuclear-complex", - "name": "nucleus of cerebellar nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008995", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusOfDiagonalBand.jsonld b/instances/UBERONParcellation/nucleusOfDiagonalBand.jsonld deleted file mode 100644 index 56df04775..000000000 --- a/instances/UBERONParcellation/nucleusOfDiagonalBand.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfDiagonalBand", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of diagonal band' is a telencephalic nucleus. It is part of the medial septal complex.", - "description": "A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107755", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001879#nucleus-of-diagonal-band-1", - "name": "nucleus of diagonal band", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001879", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusOfLateralOlfactoryTract.jsonld b/instances/UBERONParcellation/nucleusOfLateralOlfactoryTract.jsonld deleted file mode 100644 index 8e60a798c..000000000 --- a/instances/UBERONParcellation/nucleusOfLateralOlfactoryTract.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfLateralOlfactoryTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of lateral olfactory tract' is a telencephalic nucleus. It is part of the olfactory cortex.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107757", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002893#nucleus-of-lateral-olfactory-tract-1", - "name": "nucleus of lateral olfactory tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002893", - "synonym": null -} diff --git a/instances/UBERONParcellation/nucleusOfMedialEminence.jsonld b/instances/UBERONParcellation/nucleusOfMedialEminence.jsonld deleted file mode 100644 index b76fa81c8..000000000 --- a/instances/UBERONParcellation/nucleusOfMedialEminence.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfMedialEminence", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of medial eminence' is a nucleus of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107758", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002997#nucleus-of-medial-eminence-1", - "name": "nucleus of medial eminence", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002997", - "synonym": [ - "medial eminence nucleus", - "nucleus eminentiae teretis", - "nucleus of eminentia teres" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfOpticTract.jsonld b/instances/UBERONParcellation/nucleusOfOpticTract.jsonld deleted file mode 100644 index 8097de7e8..000000000 --- a/instances/UBERONParcellation/nucleusOfOpticTract.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfOpticTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of optic tract' is a nucleus of midbrain tectum and pretectal nucleus.", - "description": "Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive inpu from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107759", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002996#nucleus-of-optic-tract-1", - "name": "nucleus of optic tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002996", - "synonym": [ - "large-celled nucleus of optic tract", - "lentiform nucleus of pretectal area", - "nucleus magnocellularis tractus optici", - "nucleus of the optic tract", - "nucleus tractus optici", - "optic tract nucleus" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfPosteriorCommissure.jsonld b/instances/UBERONParcellation/nucleusOfPosteriorCommissure.jsonld deleted file mode 100644 index eb4bfcdc1..000000000 --- a/instances/UBERONParcellation/nucleusOfPosteriorCommissure.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfPosteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of posterior commissure' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107760", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002711#nucleus-of-posterior-commissure-1", - "name": "nucleus of posterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002711", - "synonym": [ - "Darkshevich nucleus", - "Darkshevich's nucleus", - "nucleus commissura posterior", - "nucleus commissuralis posterioris", - "nucleus interstitialis of posterior commissure", - "nucleus of Darkschewitsch", - "nucleus of the posterior commissure", - "PCom", - "posterior commissure nucleus" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfSolitaryTract.jsonld b/instances/UBERONParcellation/nucleusOfSolitaryTract.jsonld deleted file mode 100644 index 9049fe051..000000000 --- a/instances/UBERONParcellation/nucleusOfSolitaryTract.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfSolitaryTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted].", - "description": "'Nucleus of solitary tract' is a nucleus of medulla oblongata and vagus nerve nucleus. It is part of the solitary tract nuclear complex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110729", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009050#solitary-nucleus", - "name": "nucleus of solitary tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009050", - "synonym": [ - "Geschmackskern@de", - "nuclei tractus solitarii", - "nucleus of the solitary tract", - "nucleus of the tractus solitarius", - "nucleus of tractus solitarius", - "nucleus solitarius", - "nucleus solitary tract", - "nucleus tracti solitarii", - "nucleus tractus solitarii", - "nucleus tractus solitarii medullae oblongatae", - "nucleus tractus solitarius", - "solitary nuclear complex", - "solitary nucleus", - "solitary tract nucleus" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfTheBrachiumOfTheInferiorColliculus.jsonld b/instances/UBERONParcellation/nucleusOfTheBrachiumOfTheInferiorColliculus.jsonld deleted file mode 100644 index 1efc6865a..000000000 --- a/instances/UBERONParcellation/nucleusOfTheBrachiumOfTheInferiorColliculus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfTheBrachiumOfTheInferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of the brachium of the inferior colliculus' is a regional part of brain. It is part of the midbrain tectum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107764", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0036012#nucleus-of-the-brachium-of-the-inferior-colliculus", - "name": "nucleus of the brachium of the inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0036012", - "synonym": [ - "brachial nucleus of the inferior colliculus", - "BrC", - "NB", - "nucleus brachium inferior colliculus", - "nucleus of the brachium of the inferior colliculus" - ] -} diff --git a/instances/UBERONParcellation/nucleusOfTrapezoidBody.jsonld b/instances/UBERONParcellation/nucleusOfTrapezoidBody.jsonld deleted file mode 100644 index 1ccf85082..000000000 --- a/instances/UBERONParcellation/nucleusOfTrapezoidBody.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusOfTrapezoidBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus of trapezoid body' is a nucleus of superior olivary complex.", - "description": "A nucleus embedded within the fibers of the trapezoid body.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111919", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007633#trapezoid-nuclear-complex", - "name": "nucleus of trapezoid body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007633", - "synonym": [ - "nuclei of trapezoid body", - "nucleus corporis trapezoidei", - "nucleus of the trapezoid body", - "nucleus trapezoidalis", - "set of nuclei of trapezoid body", - "trapezoid gray", - "trapezoid nuclear complex", - "trapezoid nuclei", - "Tz" - ] -} diff --git a/instances/UBERONParcellation/nucleusPrepositus.jsonld b/instances/UBERONParcellation/nucleusPrepositus.jsonld deleted file mode 100644 index c869c5e11..000000000 --- a/instances/UBERONParcellation/nucleusPrepositus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusPrepositus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus prepositus' is a nucleus of medulla oblongata. It is part of the pons.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107787", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002160#nucleus-prepositus-1", - "name": "nucleus prepositus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002160", - "synonym": [ - "nucleus praepositus", - "nucleus praepositus hypoglossi", - "nucleus prepositus hypoglossi", - "nucleus prepositus hypoglossus", - "prepositus hypoglossal nucleus", - "prepositus nucleus", - "prepositus nucleus (Marburg)", - "PrP" - ] -} diff --git a/instances/UBERONParcellation/nucleusRaphePallidus.jsonld b/instances/UBERONParcellation/nucleusRaphePallidus.jsonld deleted file mode 100644 index cbdada503..000000000 --- a/instances/UBERONParcellation/nucleusRaphePallidus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusRaphePallidus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Nucleus raphe pallidus' is a nucleus of medulla oblongata. It is part of the medullary raphe nuclear complex.", - "description": "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107795", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002157#nucleus-raphe-pallidus-1", - "name": "nucleus raphe pallidus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002157", - "synonym": [ - "nucleus raphC) pallidus", - "nucleus raphes pallidus", - "pallidal raphe nucleus", - "raphe pallidus nucleus", - "RPa" - ] -} diff --git a/instances/UBERONParcellation/nucleusSubceruleus.jsonld b/instances/UBERONParcellation/nucleusSubceruleus.jsonld deleted file mode 100644 index dcb4e18da..000000000 --- a/instances/UBERONParcellation/nucleusSubceruleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nucleusSubceruleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Nucleus subceruleus' is a nucleus of brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107801", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002587#nucleus-subceruleus-1", - "name": "nucleus subceruleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002587", - "synonym": null -} diff --git a/instances/UBERONParcellation/occipitalCortex.jsonld b/instances/UBERONParcellation/occipitalCortex.jsonld deleted file mode 100644 index da25bfcf4..000000000 --- a/instances/UBERONParcellation/occipitalCortex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Occipital cortex' is a cortex of cerebral lobe. It is part of the occipital lobe.", - "description": "Gray matter of neocortex located in the occipital lobe in organisms that have distinct lobes, located in the occipital pole and continuous with the gray matter of the parietal cortex and temporal cortex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107880", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016540#occipital-cortex", - "name": "occipital cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016540", - "synonym": [ - "cortex of occipital lobe", - "gray matter of occipital lobe", - "occipital lobe cortex", - "occipital neocortex" - ] -} diff --git a/instances/UBERONParcellation/occipitalGyrus.jsonld b/instances/UBERONParcellation/occipitalGyrus.jsonld deleted file mode 100644 index 23cb777db..000000000 --- a/instances/UBERONParcellation/occipitalGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A gyrus that is part of a occipital lobe.", - "description": "'Occipital gyrus' is a gyrus. It is part of the occipital lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107882", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014640#occipital-gyrus-1", - "name": "occipital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014640", - "synonym": [ - "gyrus occipitalis" - ] -} diff --git a/instances/UBERONParcellation/occipitalLobe.jsonld b/instances/UBERONParcellation/occipitalLobe.jsonld deleted file mode 100644 index 19ac743f8..000000000 --- a/instances/UBERONParcellation/occipitalLobe.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Occipital lobe' is a lobe of cerebral hemisphere.", - "description": "Posterior part of the cerebral hemisphere (MSH)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107883", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002021#occipital-lobe-1", - "name": "occipital lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002021", - "synonym": [ - "lobus occipitalis", - "regio occipitalis" - ] -} diff --git a/instances/UBERONParcellation/occipitotemporalSulcus.jsonld b/instances/UBERONParcellation/occipitotemporalSulcus.jsonld deleted file mode 100644 index 9e132a0a7..000000000 --- a/instances/UBERONParcellation/occipitotemporalSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitotemporalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Occipitotemporal sulcus' is a subarachnoid sulcus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107885", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002693#occipitotemporal-sulcus-1", - "name": "occipitotemporal sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002693", - "synonym": null -} diff --git a/instances/UBERONParcellation/oculomotorNerveRoot.jsonld b/instances/UBERONParcellation/oculomotorNerveRoot.jsonld deleted file mode 100644 index dfd0d3a65..000000000 --- a/instances/UBERONParcellation/oculomotorNerveRoot.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oculomotorNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oculomotor nerve root' is a root of cranial nerve. It is part of the midbrain tegmentum.", - "description": "Initial segment of the occulomotor nerve as it leaves the midbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107898", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002668#oculomotor-nerve-fibers", - "name": "oculomotor nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002668", - "synonym": [ - "3nf", - "central part of oculomotor nerve", - "fibrae nervi oculomotorii", - "oculomotor nerve fibers", - "oculomotor nerve tract", - "root of oculomotor nerve" - ] -} diff --git a/instances/UBERONParcellation/oculomotorNuclearComplex.jsonld b/instances/UBERONParcellation/oculomotorNuclearComplex.jsonld deleted file mode 100644 index 9b2871811..000000000 --- a/instances/UBERONParcellation/oculomotorNuclearComplex.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oculomotorNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oculomotor nuclear complex' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum.", - "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107899", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001715#oculomotor-nuclear-complex-1", - "name": "oculomotor nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001715", - "synonym": [ - "3N", - "motor nucleus III", - "nIII", - "nucleus nervi oculomotorii", - "nucleus oculomotorius", - "nucleus of oculomotor nerve", - "nucleus of oculomotor nuclear complex", - "nucleus of third cranial nerve", - "oculomotor III nuclear complex", - "oculomotor III nucleus", - "oculomotor motornucleus", - "oculomotor nucleus", - "OM", - "third cranial nerve nucleus" - ] -} diff --git a/instances/UBERONParcellation/olfactoryBulb.jsonld b/instances/UBERONParcellation/olfactoryBulb.jsonld deleted file mode 100644 index a64777291..000000000 --- a/instances/UBERONParcellation/olfactoryBulb.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryBulb", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory bulb' is a regional part of brain. It is part of the olfactory lobe.", - "description": "Structure of the vertebrate telencephalon involved in olfaction.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107921", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002264#olfactory-bulb-1", - "name": "olfactory bulb", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002264", - "synonym": [ - "bulbus olfactorius", - "bulbus olfactorius (Morgagni)", - "main olfactory bulb", - "Olb", - "olfactory lobe", - "olfactory lobe (Barr & Kiernan)" - ] -} diff --git a/instances/UBERONParcellation/olfactoryBulbGranuleCellLayer.jsonld b/instances/UBERONParcellation/olfactoryBulbGranuleCellLayer.jsonld deleted file mode 100644 index 3c2ef471a..000000000 --- a/instances/UBERONParcellation/olfactoryBulbGranuleCellLayer.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryBulbGranuleCellLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The granule cell layer contains multiple small round neurons that lack axons. Long dendritic processes of the neurons reach the more superficial layers and inhibit mitral cells and tufted cells. Small distal processes make contacts with the exiting mitral cell axons.", - "description": "'Olfactory bulb granule cell layer' is an olfactory bulb layer.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726644", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005378#olfactory-bulb-granule-cell-layer", - "name": "olfactory bulb granule cell layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005378", - "synonym": null -} diff --git a/instances/UBERONParcellation/olfactoryBulbMainGlomerularLayer.jsonld b/instances/UBERONParcellation/olfactoryBulbMainGlomerularLayer.jsonld deleted file mode 100644 index e1766ef5a..000000000 --- a/instances/UBERONParcellation/olfactoryBulbMainGlomerularLayer.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryBulbMainGlomerularLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory bulb main glomerular layer' is an olfactory bulb glomerular layer. It is part of the main olfactory bulb.", - "description": "The glomerular layer of the main olfactory bulb, lying deep to the olfactory nerve layer. It contains the glomeruli, neuropil rich spheroid structures surrounded by a distinctive shell of small neuros and glial cells (Paxinos, the Rat Nervous System, 2nd ed., Academic Press, 1995).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107938", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023934#olfactory-bulb-main-glomerular-layer-1", - "name": "olfactory bulb main glomerular layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023934", - "synonym": [ - "Gl", - "olfactory bulb main glomerular layer" - ] -} diff --git a/instances/UBERONParcellation/olfactoryBulbMitralCellLayer.jsonld b/instances/UBERONParcellation/olfactoryBulbMitralCellLayer.jsonld deleted file mode 100644 index be5e4f23c..000000000 --- a/instances/UBERONParcellation/olfactoryBulbMitralCellLayer.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryBulbMitralCellLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory bulb mitral cell layer' is an olfactory bulb layer.", - "description": "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107940", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004186#olfactory-bulb-main-mitral-cell-body-layer", - "name": "olfactory bulb mitral cell layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004186", - "synonym": [ - "Mi", - "mitral cell body layer", - "mitral cell layer", - "mitral cell layer of the olfactory bulb", - "OB mitral cell layer", - "olfactory bulb main mitral cell body layer" - ] -} diff --git a/instances/UBERONParcellation/olfactoryBulbOuterNerveLayer.jsonld b/instances/UBERONParcellation/olfactoryBulbOuterNerveLayer.jsonld deleted file mode 100644 index 728259b21..000000000 --- a/instances/UBERONParcellation/olfactoryBulbOuterNerveLayer.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryBulbOuterNerveLayer", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory bulb outer nerve layer' is an olfactory bulb layer.", - "description": "Superficial layer of the main olfactory bulb containing axons from the olfactory nerve and glial cells", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107942", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005978#olfactory-bulb-main-olfactory-nerve-layer", - "name": "olfactory bulb outer nerve layer", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005978", - "synonym": [ - "olfactory bulb main olfactory nerve layer", - "olfactory bulb olfactory nerve layer" - ] -} diff --git a/instances/UBERONParcellation/olfactoryCortex.jsonld b/instances/UBERONParcellation/olfactoryCortex.jsonld deleted file mode 100644 index 895571770..000000000 --- a/instances/UBERONParcellation/olfactoryCortex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory cortex' is a regional part of brain. It is part of the cerebral cortex and olfactory lobe.", - "description": "Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). The most recognized structure is the piriform cortex (prepyriform area), but other areas are often included, e.g., the olfactory tubercle.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107946", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002894#olfactory-cortex-1", - "name": "olfactory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002894", - "synonym": [ - "archaeocortex", - "archeocortex", - "olfactory areas", - "olfactory lobe" - ] -} diff --git a/instances/UBERONParcellation/olfactoryEntorhinalCortex.jsonld b/instances/UBERONParcellation/olfactoryEntorhinalCortex.jsonld deleted file mode 100644 index d8feb8574..000000000 --- a/instances/UBERONParcellation/olfactoryEntorhinalCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryEntorhinalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory entorhinal cortex' is a regional part of brain. It is part of the entorhinal cortex.", - "description": "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107958", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022453#olfactory-entorhinal-cortex-1", - "name": "olfactory entorhinal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022453", - "synonym": [ - "EOl" - ] -} diff --git a/instances/UBERONParcellation/olfactoryTract.jsonld b/instances/UBERONParcellation/olfactoryTract.jsonld deleted file mode 100644 index abc2dfbba..000000000 --- a/instances/UBERONParcellation/olfactoryTract.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory tract' is a tract of brain. It is part of the white matter of telencephalon.", - "description": "White matter tract that contains projections from the olfactory bulb to other parts of the brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724772", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002265#olfactory-tract-1", - "name": "olfactory tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002265", - "synonym": null -} diff --git a/instances/UBERONParcellation/olfactoryTrigone.jsonld b/instances/UBERONParcellation/olfactoryTrigone.jsonld deleted file mode 100644 index 4e81e5827..000000000 --- a/instances/UBERONParcellation/olfactoryTrigone.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryTrigone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory trigone' is a regional part of brain. It is part of the olfactory lobe.", - "description": "A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107973", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002922#olfactory-trigone-1", - "name": "olfactory trigone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002922", - "synonym": [ - "olt", - "trigonum olfactorium" - ] -} diff --git a/instances/UBERONParcellation/olfactoryTubercle.jsonld b/instances/UBERONParcellation/olfactoryTubercle.jsonld deleted file mode 100644 index 5d441dabe..000000000 --- a/instances/UBERONParcellation/olfactoryTubercle.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olfactoryTubercle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olfactory tubercle' is a telencephalic nucleus. It is part of the olfactory cortex.", - "description": "Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107974", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001883#olfactory-tubercle-1", - "name": "olfactory tubercle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001883", - "synonym": [ - "anterior perforated space", - "anterior perforated substance", - "tuberculum olfactorium" - ] -} diff --git a/instances/UBERONParcellation/olivaryPretectalNucleus.jsonld b/instances/UBERONParcellation/olivaryPretectalNucleus.jsonld deleted file mode 100644 index 4c05165dd..000000000 --- a/instances/UBERONParcellation/olivaryPretectalNucleus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olivaryPretectalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Olivary pretectal nucleus' is a nucleus of midbrain tectum and pretectal nucleus.", - "description": "Small distinct nucleus in the pretectum of mammals involved in the pupillary light reflect. In rats, it is an olive shaped (anterior) nucleus lying ventral to the brachium of the superior colliculus (Paxinos, The rat nervous system, 2nd ed, 1995, pg. 862). Physiologically, it is identified by neurons sensitive to luminance changes.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107998", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002565#olivary-pretectal-nucleus-1", - "name": "olivary pretectal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002565", - "synonym": [ - "anterior pretectal nucleus", - "nucleus olivaris colliculi superioris (Fuse)", - "nucleus olivaris corporis quadrigemini anterioris", - "nucleus olivaris mesencephali", - "nucleus olivaris pretectalis of Fuse", - "nucleus praetectalis anterior", - "nucleus praetectalis olivaris", - "nucleus pretectalis anterior", - "olivary nucleus of superior colliculus", - "OPT", - "pretectal olivary nucleus" - ] -} diff --git a/instances/UBERONParcellation/opercularPartOfInferiorFrontalGyrus.jsonld b/instances/UBERONParcellation/opercularPartOfInferiorFrontalGyrus.jsonld deleted file mode 100644 index 83352e433..000000000 --- a/instances/UBERONParcellation/opercularPartOfInferiorFrontalGyrus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/opercularPartOfInferiorFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Opercular part of inferior frontal gyrus' is part of the inferior frontal gyrus.", - "description": "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108057", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002980#opercular-part-of-inferior-frontal-gyrus-1", - "name": "opercular part of inferior frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002980", - "synonym": [ - "gyrus frontalis inferior", - "inferior frontal gyrus", - "opercular part", - "opercular portion of inferior frontal gyrus", - "pars opercularis", - "pars opercularis gyri frontalis inferioris", - "pars posterior of inferior frontal gyrus", - "posterior part of inferior frontal gyrus" - ] -} diff --git a/instances/UBERONParcellation/opticChiasma.jsonld b/instances/UBERONParcellation/opticChiasma.jsonld deleted file mode 100644 index e636165e2..000000000 --- a/instances/UBERONParcellation/opticChiasma.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/opticChiasma", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Optic chiasma' is a decussation of diencephalon.", - "description": "A location within the visual system of binocular animals where axons of retinal ganglion cells cross contralaterally or remain ipsilatterally towards termination zones in the lateral geniculate nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108069", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000959#optic-chiasm", - "name": "optic chiasma", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000959", - "synonym": [ - "chiasma", - "chiasma nervorum opticorum", - "chiasma opticum", - "decussation of optic nerve fibers", - "optic chiasm", - "optic chiasm (Rufus of Ephesus)", - "optic chiasma", - "ox" - ] -} diff --git a/instances/UBERONParcellation/opticRecessOfThirdVentricle.jsonld b/instances/UBERONParcellation/opticRecessOfThirdVentricle.jsonld deleted file mode 100644 index 690064bde..000000000 --- a/instances/UBERONParcellation/opticRecessOfThirdVentricle.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/opticRecessOfThirdVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Optic recess of third ventricle' is an anatomical entity. It is part of the third ventricle.", - "description": "Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108073", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002287#optic-recess-of-third-ventricle-1", - "name": "optic recess of third ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002287", - "synonym": [ - "optic recess", - "optic recesses", - "preoptic recess", - "recessus opticus", - "recessus praeopticus", - "recessus supraopticus", - "supraoptic recess" - ] -} diff --git a/instances/UBERONParcellation/opticTract.jsonld b/instances/UBERONParcellation/opticTract.jsonld deleted file mode 100644 index 92e28a6b1..000000000 --- a/instances/UBERONParcellation/opticTract.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/opticTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Optic tract' is a tract of diencephalon. It is part of the diencephalic white matter.", - "description": "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108074", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001908#optic-tract-1", - "name": "optic tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001908", - "synonym": null -} diff --git a/instances/UBERONParcellation/oralPartOfSpinalTrigeminalNucleus.jsonld b/instances/UBERONParcellation/oralPartOfSpinalTrigeminalNucleus.jsonld deleted file mode 100644 index 410edfc17..000000000 --- a/instances/UBERONParcellation/oralPartOfSpinalTrigeminalNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oralPartOfSpinalTrigeminalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oral part of spinal trigeminal nucleus' is a gray matter of hindbrain. It is part of the spinal nucleus of trigeminal nerve.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108080", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002591#oral-part-of-spinal-trigeminal-nucleus-1", - "name": "oral part of spinal trigeminal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002591", - "synonym": [ - "nucleus oralis tractus spinalis nervi trigemini", - "nucleus spinalis nervi trigemini", - "oral part", - "oral part of the spinal trigeminal nucleus", - "pars oralis", - "Sp5O", - "spinal nucleus of the trigeminal", - "spinal nucleus of the trigeminal oral part", - "spinal trigeminal nucleus", - "spinal trigeminal nucleus oral part" - ] -} diff --git a/instances/UBERONParcellation/oralPartOfVentralLateralNucleus.jsonld b/instances/UBERONParcellation/oralPartOfVentralLateralNucleus.jsonld deleted file mode 100644 index b49bb23a8..000000000 --- a/instances/UBERONParcellation/oralPartOfVentralLateralNucleus.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oralPartOfVentralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oral part of ventral lateral nucleus' is a gray matter of diencephalon. It is part of the ventral lateral nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108081", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002978#oral-part-of-ventral-lateral-nucleus-1", - "name": "oral part of ventral lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002978", - "synonym": [ - "anterior part (Van Buren)", - "anterior part (van buren)", - "nucleus lateralis oralis situs principalis", - "nucleus ventralis lateralis", - "nucleus ventrooralis externus", - "oral part", - "oral part of the ventral lateral nucleus", - "pars densicellularis", - "pars oralis", - "subnucleus rostralis", - "ventral anterior nucleus", - "ventral lateral anterior nucleus", - "ventral lateral nucleus", - "ventral lateral thalamic nucleus", - "VLO", - "VLO,VAL(VO)" - ] -} diff --git a/instances/UBERONParcellation/oralPartOfVentralPosterolateralNucleus.jsonld b/instances/UBERONParcellation/oralPartOfVentralPosterolateralNucleus.jsonld deleted file mode 100644 index 2ca21093e..000000000 --- a/instances/UBERONParcellation/oralPartOfVentralPosterolateralNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oralPartOfVentralPosterolateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oral part of ventral posterolateral nucleus' is a gray matter of diencephalon. It is part of the ventral posterolateral nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108082", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003019#oral-part-of-ventral-posterolateral-nucleus-1", - "name": "oral part of ventral posterolateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003019", - "synonym": [ - "nucleus lateralis intermedius lateralis", - "nucleus posteroventralis oralis", - "nucleus ventralis intermedius (DeWulf)", - "nucleus ventralis intermedius (Walker)", - "nucleus ventralis intermedius thalami", - "nucleus ventralis posterior lateralis", - "nucleus ventrointermedius", - "oral part", - "oral part of the ventral posterolateral nucleus", - "pars oralis", - "ventral part of ventral lateral posterior nucleus (jones)", - "ventral posterolateral nucleus", - "ventral posterolateral thalamic nucleus", - "ventrointermedius nucleus", - "VPLO" - ] -} diff --git a/instances/UBERONParcellation/oralPontineReticularNucleus.jsonld b/instances/UBERONParcellation/oralPontineReticularNucleus.jsonld deleted file mode 100644 index 8097590a3..000000000 --- a/instances/UBERONParcellation/oralPontineReticularNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oralPontineReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oral pontine reticular nucleus' is a nucleus of pontine reticular formation.", - "description": "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108083", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002999#oral-pontine-reticular-nucleus-1", - "name": "oral pontine reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002999", - "synonym": [ - "nucleus reticularis pontis oralis", - "oral part", - "PnO", - "pontine reticular nucleus", - "pontine reticular nucleus rostral part", - "rostral part" - ] -} diff --git a/instances/UBERONParcellation/oralPulvinarNucleus.jsonld b/instances/UBERONParcellation/oralPulvinarNucleus.jsonld deleted file mode 100644 index 8259c72fc..000000000 --- a/instances/UBERONParcellation/oralPulvinarNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oralPulvinarNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oral pulvinar nucleus' is a nucleus of dorsal thalamus. It is part of the pulvinar nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108084", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002641#oral-pulvinar-nucleus-1", - "name": "oral pulvinar nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002641", - "synonym": [ - "anterior pulvinar nucleus", - "nucleus pulvinaris anterior", - "nucleus pulvinaris oralis", - "nucleus pulvinaris oralis thalami", - "OPul", - "OPul,APul", - "oral nuclear group of pulvinar", - "oral part of pulvinar", - "oral portion of pulvinar" - ] -} diff --git a/instances/UBERONParcellation/orbitalGyriComplex.jsonld b/instances/UBERONParcellation/orbitalGyriComplex.jsonld deleted file mode 100644 index 623f625d3..000000000 --- a/instances/UBERONParcellation/orbitalGyriComplex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/orbitalGyriComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Orbital gyri complex' is a regional part of brain. It is part of the frontal lobe.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108111", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022695#orbital-gyri-complex-1", - "name": "orbital gyri complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022695", - "synonym": [ - "Orgital_gyri", - "orbital gyri complex" - ] -} diff --git a/instances/UBERONParcellation/orbitalPartOfInferiorFrontalGyrus.jsonld b/instances/UBERONParcellation/orbitalPartOfInferiorFrontalGyrus.jsonld deleted file mode 100644 index 9eba1e785..000000000 --- a/instances/UBERONParcellation/orbitalPartOfInferiorFrontalGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/orbitalPartOfInferiorFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Orbital part of inferior frontal gyrus' is a frontal gyrus. It is part of the inferior frontal gyrus.", - "description": "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine)., NeuroNames", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108113", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002624#orbital-part-of-inferior-frontal-gyrus-1", - "name": "orbital part of inferior frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002624", - "synonym": [ - "brodmann's area 36", - "gyrus frontalis inferior", - "inferior frontal gyrus", - "orbital part", - "pars orbitalis", - "pars orbitalis gyri frontalis inferioris" - ] -} diff --git a/instances/UBERONParcellation/orbitofrontalCortex.jsonld b/instances/UBERONParcellation/orbitofrontalCortex.jsonld deleted file mode 100644 index 050b97198..000000000 --- a/instances/UBERONParcellation/orbitofrontalCortex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/orbitofrontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Orbitofrontal cortex' is a frontal gyrus. It is part of the limbic system.", - "description": "Component of the prefontal cortex, frontal lobe, inferior region (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108110", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004167#orbital-frontal-cortex", - "name": "orbitofrontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004167", - "synonym": [ - "fronto-orbital cortex", - "OFC", - "orbital frontal cortex", - "orbito-frontal cortex", - "orbitofrontal cortex", - "segment of cortex of frontal lobe" - ] -} diff --git a/instances/UBERONParcellation/ovalNucleusOfStriaTerminalis.jsonld b/instances/UBERONParcellation/ovalNucleusOfStriaTerminalis.jsonld deleted file mode 100644 index 6f7b6475b..000000000 --- a/instances/UBERONParcellation/ovalNucleusOfStriaTerminalis.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ovalNucleusOfStriaTerminalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oval nucleus of stria terminalis' is a telencephalic nucleus. It is part of the anterior division of bed nuclei of stria terminalis.", - "description": "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101173", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011176#bed-nuclei-of-the-stria-terminalis-oval-nucleus-1", - "name": "oval nucleus of stria terminalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011176", - "synonym": [ - "anterior division", - "bed nuclei of the stria terminalis", - "oval nucleus" - ] -} diff --git a/instances/UBERONParcellation/paleocortex.jsonld b/instances/UBERONParcellation/paleocortex.jsonld deleted file mode 100644 index 2b7abd3d3..000000000 --- a/instances/UBERONParcellation/paleocortex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paleocortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paleocortex' is an allocortex.", - "description": "Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108371", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014735#paleocortex", - "name": "paleocortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014735", - "synonym": [ - "palaeocortex", - "paleocortex", - "paleocortex (semicortex)", - "paleocortex (Zilles)", - "paleokortikale Regionen@de" - ] -} diff --git a/instances/UBERONParcellation/paleodentateOfDentateNucleus.jsonld b/instances/UBERONParcellation/paleodentateOfDentateNucleus.jsonld deleted file mode 100644 index 804bf41f4..000000000 --- a/instances/UBERONParcellation/paleodentateOfDentateNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paleodentateOfDentateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paleodentate of dentate nucleus' is a gray matter of hindbrain. It is part of the dentate nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108372", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006743#paleodentate-of-dentate-nucleus-1", - "name": "paleodentate of dentate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006743", - "synonym": [ - "paleodentate of dentate nucleus", - "paleodentate part of dentate nucleus", - "paleodentate part of the dentate nucleus", - "paleodentate portion of dentate nucleus", - "pars paleodentata", - "Pdt" - ] -} diff --git a/instances/UBERONParcellation/pallidotegmentalFasciculus.jsonld b/instances/UBERONParcellation/pallidotegmentalFasciculus.jsonld deleted file mode 100644 index ec176531d..000000000 --- a/instances/UBERONParcellation/pallidotegmentalFasciculus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pallidotegmentalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pallidotegmental fasciculus' is a tract of brain. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108383", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002671#pallidotegmental-fasciculus-1", - "name": "pallidotegmental fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002671", - "synonym": [ - "fasciculus pallido-tegmentalis", - "fibrae pallidoolivares", - "pallidotegmental fascicle", - "pallidotegmental tract", - "ptf" - ] -} diff --git a/instances/UBERONParcellation/pallidum.jsonld b/instances/UBERONParcellation/pallidum.jsonld deleted file mode 100644 index 209f8660a..000000000 --- a/instances/UBERONParcellation/pallidum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pallidum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pallidum' is a brain gray matter. It is part of the basal ganglion.", - "description": "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0381379", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006514#pallidum", - "name": "pallidum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006514", - "synonym": null -} diff --git a/instances/UBERONParcellation/pallium.jsonld b/instances/UBERONParcellation/pallium.jsonld deleted file mode 100644 index 4f1da96ec..000000000 --- a/instances/UBERONParcellation/pallium.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pallium", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pallium' is a regional part of brain. It is part of the telencephalon.", - "description": "The commonly used synonym of the cerebral cortex. Used first by Burdach for macrodissected adult humans (1822), and by many others since, including His (1895), and Nauta & Feirtag (1986). In Latin pallium means a mantle, cloak, or blanket", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108390", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000203#pallium", - "name": "pallium", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000203", - "synonym": [ - "area dorsalis telencephali", - "Cerebral Cortex", - "dorsal part of telencephalon", - "dorsal telencephalic area", - "dorsal telencephalon" - ] -} diff --git a/instances/UBERONParcellation/parabigeminalNucleus.jsonld b/instances/UBERONParcellation/parabigeminalNucleus.jsonld deleted file mode 100644 index 8a3ba0f01..000000000 --- a/instances/UBERONParcellation/parabigeminalNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parabigeminalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parabigeminal nucleus' is a nucleus of midbrain tectum.", - "description": "Cholinergic cell group that is located ventral to the brachium of the inferior colliculus (in rat) and has reciprocal connectivity with the superior colliculus (Adapted from Paxinos, The rat central nervous system, 2nd ed, 1995, pg 865", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108414", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002140#parabigeminal-nucleus-1", - "name": "parabigeminal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002140", - "synonym": [ - "corpus parabigeminum", - "nucleus isthmi", - "nucleus parabigeminalis", - "nucleus parabigeminous", - "parabigeminal nucleus (Bechterew)", - "parageminal nucleus", - "PBG" - ] -} diff --git a/instances/UBERONParcellation/parabrachialNucleus.jsonld b/instances/UBERONParcellation/parabrachialNucleus.jsonld deleted file mode 100644 index ce6be34a1..000000000 --- a/instances/UBERONParcellation/parabrachialNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parabrachialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parabrachial nucleus' is a brainstem nucleus and hindbrain nucleus. It is part of the pons.", - "description": "A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the K\u00c3\u00b6lliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108416", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007634#parabrachial-nucleus", - "name": "parabrachial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007634", - "synonym": [ - "parabrachial nuclei", - "parabrachial complex", - "parabrachial area" - ] -} diff --git a/instances/UBERONParcellation/parabrachialPigmentalNucleus.jsonld b/instances/UBERONParcellation/parabrachialPigmentalNucleus.jsonld deleted file mode 100644 index 2d356e21f..000000000 --- a/instances/UBERONParcellation/parabrachialPigmentalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parabrachialPigmentalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parabrachial pigmental nucleus' is a brainstem nucleus, nucleus of midbrain tegmentum and midbrain nucleus. It is part of the ventral tegmental area.", - "description": "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108428", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013738#parabrachial-pigmented-nucleus", - "name": "parabrachial pigmental nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013738", - "synonym": [ - "PBP", - "parabrachial pigmented nucleus" - ] -} diff --git a/instances/UBERONParcellation/paracentralLobule.jsonld b/instances/UBERONParcellation/paracentralLobule.jsonld deleted file mode 100644 index 781a896a8..000000000 --- a/instances/UBERONParcellation/paracentralLobule.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paracentralLobule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Paracentral lobule is on the medial surface of the hemisphere and is the continuation of the precentral and postcentral gyri. The paracentral lobule controls motor and sensory innervations of the contralateral lower extremity. It is also responsible for control of defecation and urination. It includes portions of the frontal and parietal lobes: The anterior portion of the paracentral lobule is part of the frontal lobe and is often referred to as the supplementary motor area. The posterior portion is considered part of the parietal lobe and deals with somatosensory of the distal limbs.While the boundary between the lobes, the central sulcus, is easy to locate on the lateral surface of the cerebral hemispheres, this boundary is often discerned in a cytoarchetectonic manner in cases where the central sulcus is not visible on the medial surface.", - "description": "The 'paracentral lobule' is the junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729354", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035933#paracentral-lobule", - "name": "paracentral lobule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035933", - "synonym": [ - "lobulus paracentralis" - ] -} diff --git a/instances/UBERONParcellation/paraflocculus.jsonld b/instances/UBERONParcellation/paraflocculus.jsonld deleted file mode 100644 index be87d4d05..000000000 --- a/instances/UBERONParcellation/paraflocculus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paraflocculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Paraflocculus' is a cerebellum hemisphere lobule and flocculonodular lobe, hemisphere portion.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104937", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005351#paraflocculus", - "name": "paraflocculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005351", - "synonym": null -} diff --git a/instances/UBERONParcellation/parahippocampalGyrus.jsonld b/instances/UBERONParcellation/parahippocampalGyrus.jsonld deleted file mode 100644 index e2d03d0ac..000000000 --- a/instances/UBERONParcellation/parahippocampalGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parahippocampalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parahippocampal gyrus' is a gyrus. It is part of the limbic system, temporal lobe and limbic lobe.", - "description": "Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108441", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002973#parahippocampal-gyrus-1", - "name": "parahippocampal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002973", - "synonym": [ - "gyrus hippocampi", - "gyrus parahippocampalis", - "gyrus parahippocampi", - "hippocampal convolution", - "hippocampal gyrus", - "PaI" - ] -} diff --git a/instances/UBERONParcellation/paralaminarPartOfMedialDorsalNucleus.jsonld b/instances/UBERONParcellation/paralaminarPartOfMedialDorsalNucleus.jsonld deleted file mode 100644 index 746cdf865..000000000 --- a/instances/UBERONParcellation/paralaminarPartOfMedialDorsalNucleus.jsonld +++ /dev/null @@ -1,31 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paralaminarPartOfMedialDorsalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paralaminar part of medial dorsal nucleus' is a gray matter of diencephalon. It is part of the medial dorsal nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108443", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002650#paralaminar-part-of-medial-dorsal-nucleus-1", - "name": "paralaminar part of medial dorsal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002650", - "synonym": [ - "dorsomedial thalamic nucleus", - "MDPL", - "mediodorsal thalamic nucleus", - "mediodorsal thalamic nucleus paralaminar part", - "nucleus medialis dorsalis", - "nucleus medialis dorsalis caudalis (Hassler)", - "nucleus medialis dorsalis thalami", - "paralaminar part", - "paralaminar part of dorsomedial nucleus", - "paralaminar part of medial dorsal nucleus of thalamus", - "paralaminar part of the medial dorsal nucleus", - "pars multiformis", - "pars paralaminaris", - "pars paralaminaris nuclei mediodorsalis thalami", - "pars paralaminaris of medial dorsal nucleus of thalamus", - "ventral mediodorsal nucleus" - ] -} diff --git a/instances/UBERONParcellation/paramedianReticularNucleus.jsonld b/instances/UBERONParcellation/paramedianReticularNucleus.jsonld deleted file mode 100644 index ecd3c7d2c..000000000 --- a/instances/UBERONParcellation/paramedianReticularNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paramedianReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paramedian reticular nucleus' is a nucleus of medulla oblongata.", - "description": "A medullary nucleus that sends its connections to the spinal cord in a mostly ipsilateral manner.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108455", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007764#paramedian-reticular-nucleus", - "name": "paramedian reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007764", - "synonym": [ - "nucleus reticularis paramedianus", - "paramedian nucleus reticularis", - "paramedian reticular nucleus", - "ventral paramedian reticular nucleus" - ] -} diff --git a/instances/UBERONParcellation/parasolitaryNucleus.jsonld b/instances/UBERONParcellation/parasolitaryNucleus.jsonld deleted file mode 100644 index 79f5198e4..000000000 --- a/instances/UBERONParcellation/parasolitaryNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parasolitaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parasolitary nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108472", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002877#parasolitary-nucleus-1", - "name": "parasolitary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002877", - "synonym": [ - "nucleus fasciculus solitarius", - "nucleus juxtasolitarius", - "PSol" - ] -} diff --git a/instances/UBERONParcellation/parasubiculum.jsonld b/instances/UBERONParcellation/parasubiculum.jsonld deleted file mode 100644 index 127db873e..000000000 --- a/instances/UBERONParcellation/parasubiculum.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parasubiculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parasubiculum' is a regional part of brain. It is part of the hippocampal formation.", - "description": "A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108477", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004683#parasubiculum-1", - "name": "parasubiculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004683", - "synonym": [ - "parasubicular area", - "parasubicular cortex", - "parasubicular cortex (parasubiculum)", - "parasubiculum", - "PaS" - ] -} diff --git a/instances/UBERONParcellation/paratenialNucleus.jsonld b/instances/UBERONParcellation/paratenialNucleus.jsonld deleted file mode 100644 index 3c9ab6c0c..000000000 --- a/instances/UBERONParcellation/paratenialNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paratenialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paratenial nucleus' is a nucleus of dorsal thalamus. It is part of the midline nuclear group.", - "description": "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108483", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002992#paratenial-nucleus-1", - "name": "paratenial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002992", - "synonym": [ - "nuclei parataeniales thalami", - "nucleus parataenialis", - "nucleus parataenialis (Hassler)", - "nucleus parataenialis thalami", - "nucleus paratenialis thalami", - "parataenial nucleus", - "paratenial nucleus of thalamus", - "paratenial nucleus of the thalamus", - "paratenial thalamic nucleus", - "PT" - ] -} diff --git a/instances/UBERONParcellation/paraterminalGyrus.jsonld b/instances/UBERONParcellation/paraterminalGyrus.jsonld deleted file mode 100644 index 7d845920d..000000000 --- a/instances/UBERONParcellation/paraterminalGyrus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paraterminalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paraterminal gyrus' is a supracallosal gyrus.", - "description": "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108484", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002603#paraterminal-gyrus-1", - "name": "paraterminal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002603", - "synonym": [ - "gyrus paraterminalis", - "gyrus subcallosus", - "hippocampus praecommissuralis", - "hippocampus precommissuralis", - "paraterminal body (Noback)", - "peduncle of the corpus callosum", - "precommissural hippocampus", - "subcallosal gyrus" - ] -} diff --git a/instances/UBERONParcellation/paraventricularNucleusOfThalamus.jsonld b/instances/UBERONParcellation/paraventricularNucleusOfThalamus.jsonld deleted file mode 100644 index 1464e20fd..000000000 --- a/instances/UBERONParcellation/paraventricularNucleusOfThalamus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/paraventricularNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Paraventricular nucleus of thalamus' is a nucleus of dorsal thalamus. 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It is part of the parietal lobe.", - "description": "Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108533", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016530#parietal-cortex", - "name": "parietal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016530", - "synonym": [ - "cortex of parietal lobe", - "gray matter of parietal lobe", - "parietal lobe cortex", - "parietal neocortex" - ] -} diff --git a/instances/UBERONParcellation/parietalLobe.jsonld b/instances/UBERONParcellation/parietalLobe.jsonld deleted file mode 100644 index abc6bc497..000000000 --- a/instances/UBERONParcellation/parietalLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parietalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Upper central part of the cerebral hemisphere. (MSH).", - "description": "'Parietal lobe' is a lobe of cerebral hemisphere.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108534", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001872#parietal-lobe-1", - "name": "parietal lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001872", - "synonym": null -} diff --git a/instances/UBERONParcellation/parietooccipitalSulcus.jsonld b/instances/UBERONParcellation/parietooccipitalSulcus.jsonld deleted file mode 100644 index c28136863..000000000 --- a/instances/UBERONParcellation/parietooccipitalSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parietooccipitalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted].", - "description": "'Parieto-occipital sulcus' is a subarachnoid sulcus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108536", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002695#parieto-occipital-sulcus-1", - "name": "parieto-occipital sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002695", - "synonym": null -} diff --git a/instances/UBERONParcellation/parsDistalisOfAdenohypophysis.jsonld b/instances/UBERONParcellation/parsDistalisOfAdenohypophysis.jsonld deleted file mode 100644 index b3e662294..000000000 --- a/instances/UBERONParcellation/parsDistalisOfAdenohypophysis.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parsDistalisOfAdenohypophysis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pars distalis of adenohypophysis' is part of the adenohypophysis.", - "description": "The distal part of adenohypophysis: the part that makes up the main body of the gland.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103335", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006964#distal-part-of-hypophysis", - "name": "pars distalis of adenohypophysis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006964", - "synonym": [ - "anterior lobe", - "DHP", - "distal part of hypophysis", - "distal part of the hypophysis", - "pars anterior", - "pars anterior of adenohypophysis", - "pars distalis", - "pars distalis (glandula pituitaria)", - "pars distalis (hypophysis)", - "pars distalis adenohypophyseos", - "pars distalis adenohypophysis", - "pars distalis lobi anterioris hypophyseos", - "pars distalis of anterior lobe of pituitary gland", - "pars glandularis", - "pars glandularis of adenohypophysis" - ] -} diff --git a/instances/UBERONParcellation/parsIntercerebralis.jsonld b/instances/UBERONParcellation/parsIntercerebralis.jsonld deleted file mode 100644 index 5fe850a10..000000000 --- a/instances/UBERONParcellation/parsIntercerebralis.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parsIntercerebralis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pars intercerebralis' is a central nervous system cell part cluster. It is part of the brain.", - "description": "A neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730302", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001059#pars-intercerebralis", - "name": "pars intercerebralis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001059", - "synonym": null -} diff --git a/instances/UBERONParcellation/parsPostremaOfVentralLateralNucleus.jsonld b/instances/UBERONParcellation/parsPostremaOfVentralLateralNucleus.jsonld deleted file mode 100644 index 8a9ff4558..000000000 --- a/instances/UBERONParcellation/parsPostremaOfVentralLateralNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parsPostremaOfVentralLateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pars postrema of ventral lateral nucleus' is a gray matter of diencephalon. It is part of the ventral lateral nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108545", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002617#pars-postrema-of-ventral-lateral-nucleus-1", - "name": "pars postrema of ventral lateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002617", - "synonym": [ - "nucleus dorsointermedius externus magnocellularis (hassler)", - "nucleus lateralis intermedius mediodorsalis situs postremus", - "nucleus ventralis lateralis", - "nucleus ventralis lateralis thalami", - "pars postrema", - "pars postrema of the ventral lateral nucleus", - "posterodorsal part of ventral lateral posterior nucleus (Jones)", - "ventral lateral nucleus (pars postrema)", - "ventrolateral posterior thalamic nucleus", - "ventrolateral preoptic nucleus", - "VLP", - "vLps" - ] -} diff --git a/instances/UBERONParcellation/parvicellularPartOfMedialDorsalNucleus.jsonld b/instances/UBERONParcellation/parvicellularPartOfMedialDorsalNucleus.jsonld deleted file mode 100644 index 2720a5123..000000000 --- a/instances/UBERONParcellation/parvicellularPartOfMedialDorsalNucleus.jsonld +++ /dev/null @@ -1,35 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parvicellularPartOfMedialDorsalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parvicellular part of medial dorsal nucleus' is a gray matter of diencephalon. It is part of the medial dorsal nucleus of thalamus and medial dorsal nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108559", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002654#parvicellular-part-of-medial-dorsal-nucleus-1", - "name": "parvicellular part of medial dorsal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002654", - "synonym": [ - "dorsomedial thalamic nucleus", - "lateral mediodorsal nucleus", - "lateral nucleus of medial dorsal nucleus of thalamus", - "MDPC", - "mediodorsal thalamic nucleus", - "nucleus medialis dorsalis", - "nucleus medialis dorsalis fasciculosis (Hassler)", - "nucleus medialis dorsalis nucleus fasciculosis (Hassler)", - "nucleus medialis dorsalis nucleus fasciculosus (Hassler)", - "pars fasciculosa", - "pars parvicellularis", - "pars parvocellularis", - "pars parvocellularis lateralis nuclei mediodorsalis thalami", - "pars principalis nuclei ventralis anterior thalami", - "parvicellular part", - "parvicellular part of dorsomedial nucleus", - "parvicellular part of medial dorsal nucleus", - "parvicellular part of the medial dorsal nucleus", - "parvocellular nucleus of medial dorsal nucleus of thalamus", - "principal division of ventral anterior nucleus of thalamus" - ] -} diff --git a/instances/UBERONParcellation/parvicellularPartOfVentralAnteriorNucleus.jsonld b/instances/UBERONParcellation/parvicellularPartOfVentralAnteriorNucleus.jsonld deleted file mode 100644 index cea416bce..000000000 --- a/instances/UBERONParcellation/parvicellularPartOfVentralAnteriorNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parvicellularPartOfVentralAnteriorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parvicellular part of ventral anterior nucleus' is a gray matter of diencephalon. It is part of the ventral anterior nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108560", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002937#parvicellular-part-of-ventral-anterior-nucleus-1", - "name": "parvicellular part of ventral anterior nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002937", - "synonym": [ - "nucleus ventralis anterior", - "nucleus ventralis anterior (DeWulf)", - "pars parvicellularis", - "pars parvocellularis", - "parvicellular part", - "parvicellular part of the ventral anterior nucleus", - "VAPC", - "ventral anterior nucleus", - "ventral anterior thalamic nucleus", - "ventralis anterior (Jones)" - ] -} diff --git a/instances/UBERONParcellation/parvicellularPartOfVentralPosteromedialNucleus.jsonld b/instances/UBERONParcellation/parvicellularPartOfVentralPosteromedialNucleus.jsonld deleted file mode 100644 index c73061ffc..000000000 --- a/instances/UBERONParcellation/parvicellularPartOfVentralPosteromedialNucleus.jsonld +++ /dev/null @@ -1,38 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parvicellularPartOfVentralPosteromedialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parvicellular part of ventral posteromedial nucleus' is a gray matter of diencephalon. It is part of the ventral posteromedial nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108561", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003018#parvicellular-part-of-ventral-posteromedial-nucleus-1", - "name": "parvicellular part of ventral posteromedial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003018", - "synonym": [ - "gustatory nucleus (thalamus)", - "gustatory thalamic nucleus", - "nucleus ventralis posterior medialis", - "nucleus ventralis posterior medialis thalami", - "pars parvicellularis", - "pars parvicellularis nuclei ventralis posteromedialis thalami", - "pars parvocellularis", - "parvicellular part", - "parvicellular part of the ventral posteromedial nucleus", - "parvicellular part of ventral posteromedial nucleus of thalamus", - "parvocellular part", - "thalamic gustatory area", - "thalamic gustatory relay", - "thalamic taste relay", - "ventral posteromedial nucleus", - "ventral posteromedial nucleus of thalamus", - "ventral posteromedial nucleus of the thalamus", - "ventral posteromedial nucleus of the thalamus parvicellular part", - "ventral posteromedial thalamic nucleus", - "ventroposterior medial thalamic nucleus", - "ventroposteromedial nucleus of the thalamus", - "ventroposteromedial nucleus of the thalamus parvicellular part", - "VPMPC" - ] -} diff --git a/instances/UBERONParcellation/parvocellularOculomotorNucleus.jsonld b/instances/UBERONParcellation/parvocellularOculomotorNucleus.jsonld deleted file mode 100644 index 0ed5b8657..000000000 --- a/instances/UBERONParcellation/parvocellularOculomotorNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parvocellularOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parvocellular oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108563", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002141#parvocellular-oculomotor-nucleus-1", - "name": "parvocellular oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002141", - "synonym": null -} diff --git a/instances/UBERONParcellation/parvocellularPartOfRedNucleus.jsonld b/instances/UBERONParcellation/parvocellularPartOfRedNucleus.jsonld deleted file mode 100644 index 0b80740f5..000000000 --- a/instances/UBERONParcellation/parvocellularPartOfRedNucleus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/parvocellularPartOfRedNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Parvocellular part of red nucleus' is a gray matter of midbrain. It is part of the red nucleus.", - "description": "Rostral portion of the red nucleus, located in the midbrain but originated from the diencephalon. Contains both large and small cells.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108564", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002938#parvocellular-part-of-red-nucleus-1", - "name": "parvocellular part of red nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002938", - "synonym": [ - "neoruber", - "neorubrum", - "nucleus ruber", - "nucleus ruber parvocellularis", - "pars parvocellularis", - "pars parvocellularis (ruber)", - "pars parvocellularis nuclei rubri", - "parvicellular part", - "parvocellular part", - "parvocellular part of the red nucleus", - "parvocellular red nucleus", - "red nucleus", - "red nucleus parvicellular part", - "RPC" - ] -} diff --git a/instances/UBERONParcellation/pedunculopontineTegmentalNucleus.jsonld b/instances/UBERONParcellation/pedunculopontineTegmentalNucleus.jsonld deleted file mode 100644 index c8a31aade..000000000 --- a/instances/UBERONParcellation/pedunculopontineTegmentalNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pedunculopontineTegmentalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted].", - "description": "'Pedunculopontine tegmental nucleus' is a nucleus of midbrain reticular formation.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108643", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002142#pedunculopontine-tegmental-nucleus-1", - "name": "pedunculopontine tegmental nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002142", - "synonym": null -} diff --git a/instances/UBERONParcellation/periamygdaloidArea.jsonld b/instances/UBERONParcellation/periamygdaloidArea.jsonld deleted file mode 100644 index 32b0ffe37..000000000 --- a/instances/UBERONParcellation/periamygdaloidArea.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/periamygdaloidArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Periamygdaloid area' is a cerebral hemisphere gray matter. It is part of the parahippocampal gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108715", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002656#periamygdaloid-area-1", - "name": "periamygdaloid area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002656", - "synonym": [ - "cortical amygdaloid nucleus", - "gyrus semilunaris", - "Para-amygdaloid cortex", - "periamygdalar area", - "periamygdaloid area", - "periamygdaloid cortex", - "periamygdaloid region", - "posterior amygdalar nucleus", - "posterior nucleus of the amygdala", - "regio periamygdalaris", - "semilunar gyrus", - "ventral cortical nucleus of amygdala" - ] -} diff --git a/instances/UBERONParcellation/periamygdaloidCortex.jsonld b/instances/UBERONParcellation/periamygdaloidCortex.jsonld deleted file mode 100644 index a0aec724b..000000000 --- a/instances/UBERONParcellation/periamygdaloidCortex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/periamygdaloidCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Periamygdaloid cortex' is a regional part of brain. It is part of the cerebral cortex and corticomedial nuclear complex.", - "description": "Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108716", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014537#periamygdaloid-cortex-1", - "name": "periamygdaloid cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014537", - "synonym": [ - "periamygdaloid area", - "periamygdaloid cortex" - ] -} diff --git a/instances/UBERONParcellation/pericalcarineCortex.jsonld b/instances/UBERONParcellation/pericalcarineCortex.jsonld deleted file mode 100644 index 0d527cc75..000000000 --- a/instances/UBERONParcellation/pericalcarineCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pericalcarineCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pericalcarine cortex' is a regional part of brain. It is part of the parietal lobe.", - "description": "Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108719", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022534#pericalcarine-cortex-1", - "name": "pericalcarine cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022534", - "synonym": [ - "pericalcarine cortex" - ] -} diff --git a/instances/UBERONParcellation/pericentralNucleusOfInferiorColliculus.jsonld b/instances/UBERONParcellation/pericentralNucleusOfInferiorColliculus.jsonld deleted file mode 100644 index 665d2b9cd..000000000 --- a/instances/UBERONParcellation/pericentralNucleusOfInferiorColliculus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pericentralNucleusOfInferiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pericentral nucleus of inferior colliculus' is a nucleus of midbrain tectum. It is part of the inferior colliculus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108720", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002577#pericentral-nucleus-of-inferior-colliculus-1", - "name": "pericentral nucleus of inferior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002577", - "synonym": [ - "cortex of inferior colliculus", - "dorsal cortex of the inferior colliculus", - "dorsal nucleus", - "inferior colliculus", - "nucleus pericentralis (colliculi inferioris)", - "nucleus pericentralis colliculi inferioris", - "pericentral nucleus of the inferior colliculus" - ] -} diff --git a/instances/UBERONParcellation/periolivaryNucleus.jsonld b/instances/UBERONParcellation/periolivaryNucleus.jsonld deleted file mode 100644 index c51512a20..000000000 --- a/instances/UBERONParcellation/periolivaryNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/periolivaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Periolivary nucleus' is a nucleus of superior olivary complex.", - "description": "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108729", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002971#periolivary-nucleus-1", - "name": "periolivary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002971", - "synonym": [ - "nuclei periolivares", - "nucleus periolivaris", - "peri-olivary nuclei", - "peri-olivary nucleus", - "periolivary nuclei", - "periolivary region", - "POI", - "superior olivary complex periolivary region" - ] -} diff --git a/instances/UBERONParcellation/peripeduncularNucleus.jsonld b/instances/UBERONParcellation/peripeduncularNucleus.jsonld deleted file mode 100644 index d0ea9e6dc..000000000 --- a/instances/UBERONParcellation/peripeduncularNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/peripeduncularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Peripeduncular nucleus' is a brainstem nucleus, nucleus of midbrain tegmentum and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108731", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002144#peripeduncular-nucleus-1", - "name": "peripeduncular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002144", - "synonym": null -} diff --git a/instances/UBERONParcellation/perirhinalCortex.jsonld b/instances/UBERONParcellation/perirhinalCortex.jsonld deleted file mode 100644 index cca073ba7..000000000 --- a/instances/UBERONParcellation/perirhinalCortex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/perirhinalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Perirhinal cortex' is a regional part of brain. It is part of the cerebral cortex.", - "description": "Region of cortex near to the rhinal sulcus. It is defined differently in different nomenclatures, due in part to the lack of agreement on the definition of the border of this region. In the rat, the perirhinal cortex occupies only caudal levels of the rhinal sulcus while in the monkey, it occurpies the full rostrocaudal extent of the rhinal sulcus (Burwell et al., Hippocampus, 5: 390-408, 1995).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108747", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006083#perirhinal-cortex", - "name": "perirhinal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006083", - "synonym": [ - "area perirhinalis", - "Brodmann's area 35", - "perihinal area", - "perirhinal area", - "perirhinal cortex" - ] -} diff --git a/instances/UBERONParcellation/peritrigeminalNucleus.jsonld b/instances/UBERONParcellation/peritrigeminalNucleus.jsonld deleted file mode 100644 index 9e39e96c4..000000000 --- a/instances/UBERONParcellation/peritrigeminalNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/peritrigeminalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Peritrigeminal nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108752", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002879#peritrigeminal-nucleus-1", - "name": "peritrigeminal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002879", - "synonym": [ - "Pe5", - "nucleus peritrigeminalis" - ] -} diff --git a/instances/UBERONParcellation/pinealBody.jsonld b/instances/UBERONParcellation/pinealBody.jsonld deleted file mode 100644 index 76df5137a..000000000 --- a/instances/UBERONParcellation/pinealBody.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pinealBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pineal body' is a gland of diencephalon and secretory circumventricular organ. It is part of the pineal complex.", - "description": "A midline, cone like structure located in the dorso-caudal roof of the 3rd ventricle, attached by peduncles to the habenular and posterior commissures. The stalk contains nerve fibers, blood vessels, connective tissue and parenchymal cells (Paxinos, The Rat Central Nervous System, 2nd ed, pg 399).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108891", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001905#pineal-body-1", - "name": "pineal body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001905", - "synonym": null -} diff --git a/instances/UBERONParcellation/piriformCortex.jsonld b/instances/UBERONParcellation/piriformCortex.jsonld deleted file mode 100644 index a2a079246..000000000 --- a/instances/UBERONParcellation/piriformCortex.jsonld +++ /dev/null @@ -1,38 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/piriformCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Prepyriform area (or prepiriform cortex) is a portion of the rhinencephalon consisting of paleocortex. Some sources state that it is part of the primary olfactory cortex.", - "description": "'Piriform cortex' is a regional part of brain. It is part of the olfactory cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109236", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004725#piriform-cortex-1", - "name": "piriform cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004725", - "synonym": [ - "(pre-)piriform cortex", - "area prepiriformis", - "cortex piriformis", - "eupalaeocortex", - "gyrus olfactorius lateralis", - "lateral olfactory gyrus", - "olfactory pallium", - "palaeocortex II", - "paleopallium", - "piriform area", - "piriform cortex", - "piriform cortex (Price)", - "piriform lobe", - "piriform olfactory cortex", - "prepiriform cortex", - "prepiriform region", - "prepyriform cortex", - "primary olfactory areas", - "primary olfactory cortex", - "pyriform area", - "pyriform cortex", - "pyriform lobe", - "regio praepiriformis" - ] -} diff --git a/instances/UBERONParcellation/piriformCortexLayer1a.jsonld b/instances/UBERONParcellation/piriformCortexLayer1a.jsonld deleted file mode 100644 index 7bc4cf7c7..000000000 --- a/instances/UBERONParcellation/piriformCortexLayer1a.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/piriformCortexLayer1a", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Piriform cortex layer 1a' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the piriform cortex layer 1.", - "description": "Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108922", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023900#piriform-cortex-layer-1a-1", - "name": "piriform cortex layer 1a", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023900", - "synonym": [ - "piriform cortex layer 1a" - ] -} diff --git a/instances/UBERONParcellation/piriformCortexLayer1b.jsonld b/instances/UBERONParcellation/piriformCortexLayer1b.jsonld deleted file mode 100644 index bd17da895..000000000 --- a/instances/UBERONParcellation/piriformCortexLayer1b.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/piriformCortexLayer1b", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Piriform cortex layer 1b' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the piriform cortex layer 1.", - "description": "Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108923", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023901#piriform-cortex-layer-1b-1", - "name": "piriform cortex layer 1b", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023901", - "synonym": [ - "piriform cortex layer 1b" - ] -} diff --git a/instances/UBERONParcellation/pituitaryGland.jsonld b/instances/UBERONParcellation/pituitaryGland.jsonld deleted file mode 100644 index 6701f66ab..000000000 --- a/instances/UBERONParcellation/pituitaryGland.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pituitaryGland", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pituitary gland' is a gland of diencephalon and neuroendocrine gland.", - "description": "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105172", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000007#hypophysis", - "name": "pituitary gland", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000007", - "synonym": [ - "glandula pituitaria", - "Hp", - "hypophysis", - "hypophysis cerebri", - "pituitary", - "pituitary body", - "pituitary gland" - ] -} diff --git a/instances/UBERONParcellation/pituitaryStalk.jsonld b/instances/UBERONParcellation/pituitaryStalk.jsonld deleted file mode 100644 index 258d03e71..000000000 --- a/instances/UBERONParcellation/pituitaryStalk.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pituitaryStalk", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pituitary stalk' is a regional part of brain. It is part of the neurohypophysis and neurohypophysis.", - "description": "The apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105483", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002434#infundibular-stem", - "name": "pituitary stalk", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002434", - "synonym": [ - "hypophyseal Infundibulum", - "hypophyseal stalk", - "hypophysial stalk", - "InfS", - "infundibular stalk", - "infundibular stem", - "infundibular stem of neurohypophysis", - "infundibulum", - "infundibulum (lobus posterior) (glandula pituitaria)", - "infundibulum hypophysis", - "infundibulum neurohypophyseos", - "infundibulum of hypothalamus", - "infundibulum of neurohypophysis", - "infundibulum of pituitary gland", - "infundibulum of posterior lobe of pituitary gland", - "neurohypophysis infundibulum", - "pars tuberalis (hypophysis)", - "pituitary infundibular stalk", - "THP", - "tuberal part of hypophysis", - "tuberal part of the hypophysis" - ] -} diff --git a/instances/UBERONParcellation/planumPolare.jsonld b/instances/UBERONParcellation/planumPolare.jsonld deleted file mode 100644 index bbb3a126c..000000000 --- a/instances/UBERONParcellation/planumPolare.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/planumPolare", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Planum polare' is a regional part of brain. It is part of the superior temporal gyrus.", - "description": "A portion of the superior temporal gyrus near the temporal pole in the human.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0108976", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023861#planum-polare-1", - "name": "planum polare", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023861", - "synonym": [ - "planum polare" - ] -} diff --git a/instances/UBERONParcellation/pons.jsonld b/instances/UBERONParcellation/pons.jsonld deleted file mode 100644 index 04a6a0c87..000000000 --- a/instances/UBERONParcellation/pons.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pons' is a regional part of brain. It is part of the metencephalon and brainstem.", - "description": "The part of the central nervous system lying between the medulla oblongata and the mesencephalon, ventral to the cerebellum, and consisting of a pars dorsalis and a pars ventralis. (MeSH) The ventral topographic division of the hindbrain; the dorsal topographic division is the cerebellum. The middle cerebellar peduncle on the periphery of the macrodissected adult human pons (\"bridge\" in English) was identified by Varolio (1573, Fig. I, f. 17v; also see Clarke & O'Malley 1996, pp. 634-635, 821). Collins (1685, see Tab. 48-L, his caudex of medulla oblongata) identified the pons as defined here, and Haller (1747, see translation by Mihles, 1754, pp. 287, 296) provided the term itself. Pons Varolii (Bell, 1802) is a synonym.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109019", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000988#pons-1", - "name": "pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000988", - "synonym": [ - "Metencephalon", - "pons cerebri", - "pons of Varolius", - "pons Varolii" - ] -} diff --git a/instances/UBERONParcellation/pontineNuclearGroup.jsonld b/instances/UBERONParcellation/pontineNuclearGroup.jsonld deleted file mode 100644 index 5eb6e061f..000000000 --- a/instances/UBERONParcellation/pontineNuclearGroup.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pontineNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pontine nuclear group' is a brainstem nucleus and hindbrain nucleus. It is part of the basal part of pons.", - "description": "Nuclei in the basal pons, intermingled among the descending axons from the cortex, that receive neocrotcial input and give rise to many axons that cross the midline to enter the contralateral cerebellum (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 135)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109028", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002151#pontine-nuclear-complex", - "name": "pontine nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002151", - "synonym": [ - "nuclei brachii pontis", - "nuclei pontis", - "nucleus pontis", - "Pn", - "pontine gray", - "pontine gray matter", - "pontine grey matter", - "pontine nuclear complex", - "pontine nuclear group", - "pontine nuclei", - "pontine nucleus" - ] -} diff --git a/instances/UBERONParcellation/pontineRapheNucleus.jsonld b/instances/UBERONParcellation/pontineRapheNucleus.jsonld deleted file mode 100644 index dfd8482c6..000000000 --- a/instances/UBERONParcellation/pontineRapheNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pontineRapheNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pontine raphe nucleus' is a brainstem nucleus and hindbrain nucleus. It is part of the pontine tegmentum and raphe nuclei.", - "description": "The pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109029", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002047#pontine-raphe-nucleus-1", - "name": "pontine raphe nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002047", - "synonym": [ - "nucleus raphe pontis", - "nucleus raphes pontis", - "PnR", - "raphe (mediana pontina)", - "raphe of pons", - "raphe pontis", - "raphe pontis nucleus" - ] -} diff --git a/instances/UBERONParcellation/pontineReticularFormation.jsonld b/instances/UBERONParcellation/pontineReticularFormation.jsonld deleted file mode 100644 index 5024bed03..000000000 --- a/instances/UBERONParcellation/pontineReticularFormation.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pontineReticularFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pontine reticular formation' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the reticular formation and pontine tegmentum.", - "description": "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109030", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002573#pontine-reticular-formation-1", - "name": "pontine reticular formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002573", - "synonym": [ - "formatio reticularis pontis", - "pons of varolius reticular formation", - "pons reticular formation", - "pontine reticular nucleus", - "pontine reticular nucleus rostral part", - "pontine reticulotegmental nucleus", - "reticular formation of pons", - "reticular formation of pons of varolius" - ] -} diff --git a/instances/UBERONParcellation/pontineTegmentum.jsonld b/instances/UBERONParcellation/pontineTegmentum.jsonld deleted file mode 100644 index d1bba47e4..000000000 --- a/instances/UBERONParcellation/pontineTegmentum.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pontineTegmentum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pontine tegmentum' is part of the pons.", - "description": "Dorsal portion of the pons, containing cranial nervee nuclei, ascending and descending tracts and reticular nuclei. It is continuous with the reticular formation of the medulla (Carpenter, A Core Text of Neuroanatomy, 3rd ed, 1985, pg 133).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109034", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003023#pontine-tegmentum-1", - "name": "pontine tegmentum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003023", - "synonym": [ - "dorsal pons", - "dorsal portion of pons", - "pars dorsalis pontis", - "pars posterior pontis", - "tegmental portion of pons", - "tegmentum of pons", - "tegmentum pontis" - ] -} diff --git a/instances/UBERONParcellation/pontobulbarNucleus.jsonld b/instances/UBERONParcellation/pontobulbarNucleus.jsonld deleted file mode 100644 index cd59b5f75..000000000 --- a/instances/UBERONParcellation/pontobulbarNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pontobulbarNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pontobulbar nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109035", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002880#pontobulbar-nucleus-1", - "name": "pontobulbar nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002880", - "synonym": [ - "corpus pontobulbare", - "nucleus of circumolivary bundle", - "nucleus pontobulbaris", - "PnB", - "pontobulbar body" - ] -} diff --git a/instances/UBERONParcellation/postcentralGyrus.jsonld b/instances/UBERONParcellation/postcentralGyrus.jsonld deleted file mode 100644 index 29b4ac14a..000000000 --- a/instances/UBERONParcellation/postcentralGyrus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/postcentralGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Postcentral gyrus' is a gyrus. It is part of the parietal lobe.", - "description": "Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109070", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002581#postcentral-gyrus-1", - "name": "postcentral gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002581", - "synonym": [ - "gyrus centralis posterior", - "gyrus postcentralis", - "post central gyrus", - "postcentral convolution", - "posterior central gyrus", - "postrolandic gyrus", - "somatosensory cortex" - ] -} diff --git a/instances/UBERONParcellation/postcentralSulcusOfParietalLobe.jsonld b/instances/UBERONParcellation/postcentralSulcusOfParietalLobe.jsonld deleted file mode 100644 index 7ac8d1cc2..000000000 --- a/instances/UBERONParcellation/postcentralSulcusOfParietalLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/postcentralSulcusOfParietalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted].", - "description": "'Postcentral sulcus of parietal lobe' is a sulcus of parietal lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109071", - "knowledgeSpaceLink": null, - "name": "postcentral sulcus of parietal lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002915", - "synonym": null -} diff --git a/instances/UBERONParcellation/postcommissuralFornixOfBrain.jsonld b/instances/UBERONParcellation/postcommissuralFornixOfBrain.jsonld deleted file mode 100644 index 373dc9ffb..000000000 --- a/instances/UBERONParcellation/postcommissuralFornixOfBrain.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/postcommissuralFornixOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Postcommissural fornix of brain' is a tract of diencephalon. It is part of the fornix of brain and lateral hypothalamic area.", - "description": "The posterior fibers of the fornix, which continue through the hypothalamus to the mammillary bodies; then to the anterior nuclei of thalamus, which project to the cingulate cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109072", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003016#postcommissural-fornix", - "name": "postcommissural fornix of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003016", - "synonym": [ - "columna posterior fornicis", - "fornix (entering Corpus mamillare)", - "fornix postcommissuralis", - "pofx", - "postcommissural fornix" - ] -} diff --git a/instances/UBERONParcellation/posteriorCingulateCortex.jsonld b/instances/UBERONParcellation/posteriorCingulateCortex.jsonld deleted file mode 100644 index c283f6058..000000000 --- a/instances/UBERONParcellation/posteriorCingulateCortex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorCingulateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior cingulate cortex' is a regional part of brain. It is part of the cingulate cortex.", - "description": "Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109087", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022353#posterior-cingulate-cortex-1", - "name": "posterior cingulate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022353", - "synonym": [ - "cingulate gyrus", - "posterior cingular cortex", - "posterior cingulate", - "posterior cingulate cortex", - "posterior division" - ] -} diff --git a/instances/UBERONParcellation/posteriorCingulateGyrus.jsonld b/instances/UBERONParcellation/posteriorCingulateGyrus.jsonld deleted file mode 100644 index 06f8e6ccb..000000000 --- a/instances/UBERONParcellation/posteriorCingulateGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorCingulateGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior cingulate gyrus' is a gyrus. It is part of the cingulate gyrus.", - "description": "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109088", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002740#posterior-cingulate-gyrus-1", - "name": "posterior cingulate gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002740", - "synonym": [ - "cGp", - "gyrus cinguli posterior", - "gyrus limbicus posterior", - "PCgG", - "posterior cingulate", - "posterior cingulate gyrus" - ] -} diff --git a/instances/UBERONParcellation/posteriorColumnOfFornix.jsonld b/instances/UBERONParcellation/posteriorColumnOfFornix.jsonld deleted file mode 100644 index 2a4f4dd0c..000000000 --- a/instances/UBERONParcellation/posteriorColumnOfFornix.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorColumnOfFornix", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior column of fornix' is a neuron projection bundle and central nervous system cell part cluster. It is part of the fornix of brain.", - "description": "Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109089", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006115#posterior-column-of-fornix-1", - "name": "posterior column of fornix", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006115", - "synonym": [ - "crus fornicis", - "crus of fornix", - "crus posterius", - "fornix", - "posterior column of fornix", - "posterior column of fornix of forebrain", - "posterior crus of fornix", - "posterior pillar of fornix" - ] -} diff --git a/instances/UBERONParcellation/posteriorCommissure.jsonld b/instances/UBERONParcellation/posteriorCommissure.jsonld deleted file mode 100644 index 2ed9c58a0..000000000 --- a/instances/UBERONParcellation/posteriorCommissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior commissure' is a commissure of diencephalon. It is part of the diencephalic white matter.", - "description": "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109090", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000936#posterior-commissure-1", - "name": "posterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000936", - "synonym": null -} diff --git a/instances/UBERONParcellation/posteriorHornLateralVentricle.jsonld b/instances/UBERONParcellation/posteriorHornLateralVentricle.jsonld deleted file mode 100644 index b594350eb..000000000 --- a/instances/UBERONParcellation/posteriorHornLateralVentricle.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorHornLateralVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior horn lateral ventricle' is a telencephalic ventricle.", - "description": "Part of the lateral ventricle that extends posteriorly into the occipital lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109097", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004672#posterior-horn-lateral-ventricle-1", - "name": "posterior horn lateral ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004672", - "synonym": [ - "cornu occipitale", - "cornu occipitale (ventriculi lateralis)", - "cornu occipitale ventriculi lateralis", - "cornu posterius", - "cornu posterius (ventriculi lateralis)", - "cornu posterius ventriculi lateralis", - "occipital horn", - "occipital horn of lateral ventricle", - "posterior horn lateral ventricle", - "posterior horn of lateral ventricle", - "posterior horn of the lateral ventricle", - "ventriculus lateralis" - ] -} diff --git a/instances/UBERONParcellation/posteriorHypothalamicRegion.jsonld b/instances/UBERONParcellation/posteriorHypothalamicRegion.jsonld deleted file mode 100644 index 4a137c0cc..000000000 --- a/instances/UBERONParcellation/posteriorHypothalamicRegion.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorHypothalamicRegion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior hypothalamic region' is a regional part of brain. It is part of the hypothalamus.", - "description": "The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109099", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002770#posterior-hypothalamic-region-1", - "name": "posterior hypothalamic region", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002770", - "synonym": [ - "hypothalamus posterior", - "mammillary level of hypothalamus", - "mammillary region", - "PHR", - "posterior hypothalamus", - "regio hypothalamica posterior" - ] -} diff --git a/instances/UBERONParcellation/posteriorLimbOfInternalCapsule.jsonld b/instances/UBERONParcellation/posteriorLimbOfInternalCapsule.jsonld deleted file mode 100644 index 714ff6148..000000000 --- a/instances/UBERONParcellation/posteriorLimbOfInternalCapsule.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorLimbOfInternalCapsule", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior limb of internal capsule' is a limb of internal capsule of telencephalon.", - "description": "Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109100", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014527#posterior-limb-of-internal-capsule-1", - "name": "posterior limb of internal capsule", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014527", - "synonym": [ - "capsula interna", - "crus posterius capsulae internae", - "pars posterior", - "posterior internal capsule", - "posterior limb", - "posterior limb of the internal capsule" - ] -} diff --git a/instances/UBERONParcellation/posteriorLobeOfCerebellum.jsonld b/instances/UBERONParcellation/posteriorLobeOfCerebellum.jsonld deleted file mode 100644 index 9018c292b..000000000 --- a/instances/UBERONParcellation/posteriorLobeOfCerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorLobeOfCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure.", - "description": "'Posterior lobe of cerebellum' is a cerebellum lobe.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109103", - "knowledgeSpaceLink": null, - "name": "posterior lobe of cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004002", - "synonym": null -} diff --git a/instances/UBERONParcellation/posteriorMedianEminence.jsonld b/instances/UBERONParcellation/posteriorMedianEminence.jsonld deleted file mode 100644 index b8a896d3f..000000000 --- a/instances/UBERONParcellation/posteriorMedianEminence.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorMedianEminence", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior median eminence' is a regional part of brain. It is part of the median eminence of neurohypophysis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109104", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002652#posterior-median-eminence-1", - "name": "posterior median eminence", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002652", - "synonym": [ - "PME", - "eminentia mediana posterior" - ] -} diff --git a/instances/UBERONParcellation/posteriorNuclearComplexOfThalamus.jsonld b/instances/UBERONParcellation/posteriorNuclearComplexOfThalamus.jsonld deleted file mode 100644 index ec4be8d32..000000000 --- a/instances/UBERONParcellation/posteriorNuclearComplexOfThalamus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorNuclearComplexOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior nuclear complex of thalamus' is a nuclear complex of neuraxis and gray matter of diencephalon. It is part of the dorsal thalamus.", - "description": "Part of thalamus comprising ill defined cellular groups in the caudal thalamus at the meso-diencephalic junction. It is not a homogeneous structure but consists of several distinct cellular groups, including the suprageniculate and limitans nuclei, the magnocellular division of the medial geniculate body, portions of the pulvinar nucleus and an area of mixed cell types intercalated between the ventroposterior nucleus and the nucleus lateral posterior (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 97)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109109", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002709#posterior-nuclear-complex", - "name": "posterior nuclear complex of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002709", - "synonym": [ - "caudal thalamic nucleus", - "nuclei posteriores thalami", - "parieto-occipital", - "PNC", - "posterior complex of thalamus", - "posterior complex of the thalamus", - "posterior nuclear complex", - "posterior nuclear complex of thalamus", - "posterior nuclear group of thalamus", - "posterior nucleus of dorsal thalamus", - "posterior thalamic nuclear group", - "posterior thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/posteriorNucleusOfHypothalamus.jsonld b/instances/UBERONParcellation/posteriorNucleusOfHypothalamus.jsonld deleted file mode 100644 index 89c88846a..000000000 --- a/instances/UBERONParcellation/posteriorNucleusOfHypothalamus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorNucleusOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior nucleus of hypothalamus' is a hypothalamic nucleus. It is part of the posterior hypothalamic region.", - "description": "The posterior nucleus of the hypothalamus is one of the many nuclei that make up the hypothalamic region of the brain. Its function is thermoregulation (heating) of the body. Damage or destruction of this nucleus causes hypothermia.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109110", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002706#posterior-nucleus-of-hypothalamus-1", - "name": "posterior nucleus of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002706", - "synonym": [ - "area hypothalamica posterior", - "area posterior hypothalami", - "nucleus hypothalamicus posterior", - "nucleus posterior hypothalami", - "PH", - "posterior hypothalamic area", - "posterior hypothalamic nucleus", - "posterior nucleus", - "posterior nucleus of the hypothalamus" - ] -} diff --git a/instances/UBERONParcellation/posteriorNucleusOfThalamus.jsonld b/instances/UBERONParcellation/posteriorNucleusOfThalamus.jsonld deleted file mode 100644 index a746835fb..000000000 --- a/instances/UBERONParcellation/posteriorNucleusOfThalamus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the posterior nuclear complex of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109111", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003030#posterior-nucleus-of-thalamus-1", - "name": "posterior nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003030", - "synonym": [ - "caudal thalamic nucleus", - "nucleus posterior thalami", - "nucleus thalami posterior", - "posterior nucleus of the thalamus", - "PTh" - ] -} diff --git a/instances/UBERONParcellation/posteriorOrbitalGyrus.jsonld b/instances/UBERONParcellation/posteriorOrbitalGyrus.jsonld deleted file mode 100644 index 36480304d..000000000 --- a/instances/UBERONParcellation/posteriorOrbitalGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorOrbitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior orbital gyrus' is an orbital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109112", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002575#posterior-orbital-gyrus-1", - "name": "posterior orbital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002575", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/posteriorParahippocampalGyrus.jsonld b/instances/UBERONParcellation/posteriorParahippocampalGyrus.jsonld deleted file mode 100644 index 7d19de744..000000000 --- a/instances/UBERONParcellation/posteriorParahippocampalGyrus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorParahippocampalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior parahippocampal gyrus' is a gyrus. It is part of the parahippocampal gyrus.", - "description": "The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109113", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002657#posterior-parahippocampal-gyrus-1", - "name": "posterior parahippocampal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002657", - "synonym": [ - "gyrus parahippocampalis", - "parahippocampal gyrus", - "parahippocampal gyrus (amaral)", - "parahippocampal gyrus (Insausti)", - "pars posterior", - "pHp", - "posterior division", - "posterior parahippocampal gyrus" - ] -} diff --git a/instances/UBERONParcellation/posteriorPartOfAnteriorCommissure.jsonld b/instances/UBERONParcellation/posteriorPartOfAnteriorCommissure.jsonld deleted file mode 100644 index 4cdeed845..000000000 --- a/instances/UBERONParcellation/posteriorPartOfAnteriorCommissure.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorPartOfAnteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior part of anterior commissure' is a commissure of telencephalon. It is part of the anterior commissure.", - "description": "The main part of the anterior commissure, distinct from the anterior olfactory part, that interconnects the temporal lobes. (Maryann Martone)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109121", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003043#posterior-part-of-anterior-commissure-1", - "name": "posterior part of anterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003043", - "synonym": [ - "anterior commissure", - "anterior commissure pars posterior", - "anterior commissure temporal limb", - "commissura anterior", - "commissura rostralis", - "crus posterius", - "pars posterior", - "pars posterior commissurae anterioris", - "posterior part", - "temporal limb", - "temporal limb of anterior commissure" - ] -} diff --git a/instances/UBERONParcellation/posteriorPeriventricularNucleus.jsonld b/instances/UBERONParcellation/posteriorPeriventricularNucleus.jsonld deleted file mode 100644 index 68b240110..000000000 --- a/instances/UBERONParcellation/posteriorPeriventricularNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorPeriventricularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior periventricular nucleus' is a hypothalamic nucleus. It is part of the posterior hypothalamic region.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109122", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002708#posterior-periventricular-nucleus-1", - "name": "posterior periventricular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002708", - "synonym": [ - "griseum periventriculare hypothalami", - "nucleus periventricularis posterior", - "periventricular hypothalamic nucleus", - "periventricular nucleus", - "posterior paraventricular nucleus", - "posterior part", - "posterior periventricular hypothalamic nucleus", - "posterior periventricular nucleus", - "posterior periventricular nucleus of hypothalamus", - "posterior periventricular nucleus of the hypothalamus", - "posterior subdivision", - "PPe" - ] -} diff --git a/instances/UBERONParcellation/posteriorThalamicRadiation.jsonld b/instances/UBERONParcellation/posteriorThalamicRadiation.jsonld deleted file mode 100644 index 6cbd18209..000000000 --- a/instances/UBERONParcellation/posteriorThalamicRadiation.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorThalamicRadiation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'posterior thalamic radiation' is a white matter fibre bundle. It is part of the radiation of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735032", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034747#posterior-thalamic-radiation", - "name": "posterior thalamic radiation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034747", - "synonym": [ - "pthr", - "radiatio posterior thalami", - "radiatio thalamica posterior", - "radiationes thalamicae posteriores" - ] -} diff --git a/instances/UBERONParcellation/posteriorTransverseTemporalGyrus.jsonld b/instances/UBERONParcellation/posteriorTransverseTemporalGyrus.jsonld deleted file mode 100644 index d0517e358..000000000 --- a/instances/UBERONParcellation/posteriorTransverseTemporalGyrus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteriorTransverseTemporalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterior transverse temporal gyrus' is a transverse gyrus of Heschl.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109134", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002774#posterior-transverse-temporal-gyrus-1", - "name": "posterior transverse temporal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002774", - "synonym": [ - "gyrus temporalis transversus posterior", - "posterior transverse convolution of Heschl", - "Posterior transverse temporal convolution of Heschl" - ] -} diff --git a/instances/UBERONParcellation/posterodorsalNucleusOfMedialGeniculateBody.jsonld b/instances/UBERONParcellation/posterodorsalNucleusOfMedialGeniculateBody.jsonld deleted file mode 100644 index eda6b8a66..000000000 --- a/instances/UBERONParcellation/posterodorsalNucleusOfMedialGeniculateBody.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posterodorsalNucleusOfMedialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posterodorsal nucleus of medial geniculate body' is a nucleus of dorsal thalamus. It is part of the medial geniculate body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109137", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023094#posterodorsal-nucleus-of-medial-geniculate-body-1", - "name": "posterodorsal nucleus of medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023094", - "synonym": [ - "nucleus corporis geniculati medialis", - "pars posterodorsalis", - "PDMG", - "posterodorsal nucleus of medial geniculate body", - "posterodorsal nucleus of medial geniculate complex" - ] -} diff --git a/instances/UBERONParcellation/posteroventralCochlearNucleus.jsonld b/instances/UBERONParcellation/posteroventralCochlearNucleus.jsonld deleted file mode 100644 index ce812845d..000000000 --- a/instances/UBERONParcellation/posteroventralCochlearNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/posteroventralCochlearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Posteroventral cochlear nucleus' is a cochlear nucleus. It is part of the ventral cochlear nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109153", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002831#posteroventral-cochlear-nucleus-1", - "name": "posteroventral cochlear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002831", - "synonym": [ - "nucleus cochlearis posteroventralis", - "posterior part", - "posterior part of anterior cochlear nucleus", - "posterior part of the ventral cochlear nucleus", - "posterior ventral cochlear nucleus", - "PVCo", - "ventral cochlear nucleus", - "ventral coclear nucleus posterior part" - ] -} diff --git a/instances/UBERONParcellation/postnatalSubventricularZone.jsonld b/instances/UBERONParcellation/postnatalSubventricularZone.jsonld deleted file mode 100644 index 88c34dea4..000000000 --- a/instances/UBERONParcellation/postnatalSubventricularZone.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/postnatalSubventricularZone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Postnatal subventricular zone' is a central nervous system cell part cluster and nervous system cell part layer. It is part of the forebrain.", - "description": "The subventricular zone (SVZ) is one of two sources of adult-born neurons in the mammalian brain, the other being the subgranular zone (SGZ) of the hippocampus. In most adult mammals, the SVZ is a three-layered sheath that lies along the lateral wall of the lateral ventricle and consists of type A, B, and C cells. Type A rest along the ventricle wall and are neuronal precursor cells, Type B are adjacent astrocytes, and Type C are immature precursors to the Type A neuroblasts. The neuronal precursor cells travel along the rostral migratory stream ensheathed in a tube of Type B astrocytes, until they reach the olfactory bulb. There they integrate into the existing cellular network and mature into local interneurons. While the majority become adult-born granule cells, a subset become periglomerular cells.Interestingly, the human SVZ differs from other mammals' in several ways. It consists of four layers rather than three: ependymal cells (layer I), a hypo cellular gap (layer II), a ribbon of astrocytes (layer III), and a transitional zone (layer IV). The astrocytes are capable of differentiating into many kinds of tissue including new neurons. However, there is no evidence that the proliferating neurons travel along the rostral migratory stream in a chain to populate the olfactory bulb with new interneurons, as is the case for other mammals.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111233", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004922#subventricular-zone", - "name": "postnatal subventricular zone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004922", - "synonym": [ - "adult subventricular zone", - "brain subventricular zone", - "postnatal subependymal layer", - "postnatal subependymal plate", - "postnatal subependymal zone", - "postnatal subventricular zone", - "SEZ", - "subependymal layer", - "subependymal plate", - "subependymal zone", - "subventricular zone", - "subventricular zone of brain", - "SVZ" - ] -} diff --git a/instances/UBERONParcellation/postsubiculum.jsonld b/instances/UBERONParcellation/postsubiculum.jsonld deleted file mode 100644 index 7df105424..000000000 --- a/instances/UBERONParcellation/postsubiculum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/postsubiculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Postsubiculum' is a regional part of brain. It is part of the retrohippocampal region.", - "description": "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109164", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035971#postsubiculum", - "name": "postsubiculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035971", - "synonym": [ - "POST", - "postsubicular cortex" - ] -} diff --git a/instances/UBERONParcellation/precentralGyrus.jsonld b/instances/UBERONParcellation/precentralGyrus.jsonld deleted file mode 100644 index 43fb53690..000000000 --- a/instances/UBERONParcellation/precentralGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/precentralGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Precentral gyrus' is a frontal gyrus.", - "description": "Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109193", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002703#precentral-gyrus-1", - "name": "precentral gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002703", - "synonym": [ - "anterior central gyrus", - "gyrus centralis anterior", - "gyrus praecentralis", - "motor cortex (Noback)", - "precentral convolution", - "prerolandic gyrus" - ] -} diff --git a/instances/UBERONParcellation/precentralOperculum.jsonld b/instances/UBERONParcellation/precentralOperculum.jsonld deleted file mode 100644 index 324ab4e98..000000000 --- a/instances/UBERONParcellation/precentralOperculum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/precentralOperculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Precentral operculum' is a regional part of brain. It is part of the operculum of brain.", - "description": "The ventrolateral lip of the precentral gyrus, which overlies the insula and is bounded by the lateral fissure (Brain Info).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109194", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002605#precentral-operculum-1", - "name": "precentral operculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002605", - "synonym": [ - "brodmann's area 6", - "operculum precentrale" - ] -} diff --git a/instances/UBERONParcellation/precommissuralFornixOfForebrain.jsonld b/instances/UBERONParcellation/precommissuralFornixOfForebrain.jsonld deleted file mode 100644 index c6cb6358b..000000000 --- a/instances/UBERONParcellation/precommissuralFornixOfForebrain.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/precommissuralFornixOfForebrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Precommissural fornix of forebrain' is a tract of brain. It is part of the fornix of brain.", - "description": "Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109197", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014539#precommissural-fornix", - "name": "precommissural fornix of forebrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014539", - "synonym": [ - "fornix precommissuralis", - "pcf", - "precommissural fornix" - ] -} diff --git a/instances/UBERONParcellation/precuneusCortex.jsonld b/instances/UBERONParcellation/precuneusCortex.jsonld deleted file mode 100644 index 00047a6cf..000000000 --- a/instances/UBERONParcellation/precuneusCortex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/precuneusCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Precuneus cortex' is a gyrus. It is part of the parietal lobe.", - "description": "Component of the parietal lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109199", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006093#precuneus-cortex-1", - "name": "precuneus cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006093", - "synonym": [ - "medial area of the superior parietal cortex", - "praecuneus", - "precuneate lobule", - "precuneus", - "precuneus cortex", - "quadrate lobule" - ] -} diff --git a/instances/UBERONParcellation/predorsalBundle.jsonld b/instances/UBERONParcellation/predorsalBundle.jsonld deleted file mode 100644 index 424f0f80f..000000000 --- a/instances/UBERONParcellation/predorsalBundle.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/predorsalBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Predorsal bundle' is a fasciculus of brain. It is part of the white matter of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109207", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002754#predorsal-bundle-1", - "name": "predorsal bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002754", - "synonym": [ - "fasciculus praedorsalis (Tschermak)", - "fasciculus predorsalis", - "pd", - "Predorsal bundle of Edinger", - "predorsal fasciculus", - "tectospinal fibers" - ] -} diff --git a/instances/UBERONParcellation/prefrontalCortex.jsonld b/instances/UBERONParcellation/prefrontalCortex.jsonld deleted file mode 100644 index bb82c8cdf..000000000 --- a/instances/UBERONParcellation/prefrontalCortex.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/prefrontalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Prefrontal cortex' is a regional part of brain. It is part of the frontal cortex.", - "description": "The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social \"control\" (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109209", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000451#prefrontal-cortex-1", - "name": "prefrontal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000451", - "synonym": [ - "frontal association cortex", - "prefrontal association complex", - "prefrontal association cortex" - ] -} diff --git a/instances/UBERONParcellation/premammillaryNucleus.jsonld b/instances/UBERONParcellation/premammillaryNucleus.jsonld deleted file mode 100644 index bd60ffa46..000000000 --- a/instances/UBERONParcellation/premammillaryNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/premammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Premammillary nucleus' is a hypothalamic nucleus. It is part of the posterior hypothalamic region.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109218", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002712#premammillary-nucleus-1", - "name": "premammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002712", - "synonym": [ - "nuclei premamillaris", - "nucleus premamillaris hypothalami", - "PMm", - "premamillary nucleus", - "premammillary nuclei" - ] -} diff --git a/instances/UBERONParcellation/premotorCortex.jsonld b/instances/UBERONParcellation/premotorCortex.jsonld deleted file mode 100644 index 11ad677cd..000000000 --- a/instances/UBERONParcellation/premotorCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/premotorCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'premotor cortex' is a regional part of brain. It is part of the cerebral cortex.", - "description": "The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body. [[wikipedia](http://en.wikipedia.org/wiki/Premotor_cortex)]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109222", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016634#premotor-cortex", - "name": "premotor cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016634", - "synonym": [ - "premotor cortex (area 6)" - ] -} diff --git a/instances/UBERONParcellation/preoccipitalNotch.jsonld b/instances/UBERONParcellation/preoccipitalNotch.jsonld deleted file mode 100644 index 4c0bfcdb8..000000000 --- a/instances/UBERONParcellation/preoccipitalNotch.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/preoccipitalNotch", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Preoccipital notch' is an anatomical entity. It is part of the occipital lobe.", - "description": "Small indentation on the inferior surface of the cerebral cortex at the border of the occiptal and parietal lobes. It is considered as a landmark because the occipital lobe is located just behind the line that connects that notch with the parietoccipital sulcus (adapted from Wikipedia).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109223", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002698#preoccipital-notch-1", - "name": "preoccipital notch", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002698", - "synonym": [ - "incisura parieto-occipitalis", - "incisura praeoccipitalis", - "incisura preoccipitalis", - "occipital notch", - "PON", - "preoccipital incisura", - "preoccipital incisure", - "preoccipital notch" - ] -} diff --git a/instances/UBERONParcellation/preolivaryNucleus.jsonld b/instances/UBERONParcellation/preolivaryNucleus.jsonld deleted file mode 100644 index d5313d1a5..000000000 --- a/instances/UBERONParcellation/preolivaryNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/preolivaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Preolivary nucleus' is a nucleus of superior olivary complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109224", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002976#preolivary-nucleus-1", - "name": "preolivary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002976", - "synonym": [ - "nucleus preolivaris", - "preolivary nuclei" - ] -} diff --git a/instances/UBERONParcellation/preopticArea.jsonld b/instances/UBERONParcellation/preopticArea.jsonld deleted file mode 100644 index 6f4a9129f..000000000 --- a/instances/UBERONParcellation/preopticArea.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/preopticArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Preoptic area' is a regional part of brain. It is part of the diencephalon.", - "description": "Region of hypothalamus between the anterior commissure and optic chiasm. (MSH) * pertaining to the region in or adjoining the part of the third ventricle immediately anterior to the optic chiasm. (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109225", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001928#preoptic-area-1", - "name": "preoptic area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001928", - "synonym": [ - "area hypothalamica rostralis", - "area praeoptica", - "area preoptica", - "area proptica", - "nuclei preoptici", - "POA", - "preoptic hypothalamic area", - "preoptic hypothalamic region", - "preoptic nuclei", - "preoptic region", - "preoptic region of hypothalamus", - "regio hypothalamica anterior" - ] -} diff --git a/instances/UBERONParcellation/preopticPeriventricularNucleus.jsonld b/instances/UBERONParcellation/preopticPeriventricularNucleus.jsonld deleted file mode 100644 index ad207b114..000000000 --- a/instances/UBERONParcellation/preopticPeriventricularNucleus.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/preopticPeriventricularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Preoptic periventricular nucleus' is a preoptic nucleus.", - "description": "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109227", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002622#preoptic-periventricular-nucleus-1", - "name": "preoptic periventricular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002622", - "synonym": [ - "anterior portion", - "dorsal periventricular hypothalamic nucleus", - "nucleus periventricularis hypothalami", - "nucleus periventricularis praeopticus", - "nucleus periventricularis preopticus", - "nucleus preopticus periventricularis", - "pars dorsalis", - "periventricular hypothalamic nucleus", - "periventricular nucleus", - "periventricular preoptic nucleus", - "POP", - "preoptic part", - "preoptic periventricular hypothalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/presubiculum.jsonld b/instances/UBERONParcellation/presubiculum.jsonld deleted file mode 100644 index f7ca64614..000000000 --- a/instances/UBERONParcellation/presubiculum.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/presubiculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Presubiculum' is part of the hippocampal formation and parahippocampal gyrus.", - "description": "A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109252", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001953#presubiculum-1", - "name": "presubiculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001953", - "synonym": [ - "Area 27 of Brodmann", - "praesubiculum", - "presubicular cortex (presubiculum)", - "presubiculum (Cajal)", - "PrS" - ] -} diff --git a/instances/UBERONParcellation/pretectalNucleus.jsonld b/instances/UBERONParcellation/pretectalNucleus.jsonld deleted file mode 100644 index 2fa96564a..000000000 --- a/instances/UBERONParcellation/pretectalNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pretectalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pretectal nucleus' is a nucleus of brain. It is part of the pretectal region.", - "description": "A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107761", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014450#nucleus-of-pretectal-area", - "name": "pretectal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014450", - "synonym": [ - "nucleus area pretectalis", - "nucleus of pretectal area", - "nucleus of the pretectal area", - "pretectal area nucleus", - "pretectal nucleus" - ] -} diff --git a/instances/UBERONParcellation/pretectalRegion.jsonld b/instances/UBERONParcellation/pretectalRegion.jsonld deleted file mode 100644 index 05dd71e8d..000000000 --- a/instances/UBERONParcellation/pretectalRegion.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pretectalRegion", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pretectal region' is a brain gray matter and nuclear complex of neuraxis.", - "description": "Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109258", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001944#pretectal-region-1", - "name": "pretectal region", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001944", - "synonym": [ - "area praetectalis", - "area pretectalis", - "nuclei pretectales", - "nucleus praetectalis", - "praetectum", - "pretectal area", - "pretectal nuclei", - "pretectal region", - "Pretectum", - "regio pretectalis" - ] -} diff --git a/instances/UBERONParcellation/primaryMotorCortex.jsonld b/instances/UBERONParcellation/primaryMotorCortex.jsonld deleted file mode 100644 index 151fdbd5e..000000000 --- a/instances/UBERONParcellation/primaryMotorCortex.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primaryMotorCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary motor cortex' is a regional part of brain. It is part of the frontal cortex.", - "description": "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109278", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001384#primary-motor-cortex-1", - "name": "primary motor cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001384", - "synonym": [ - "excitable area", - "gyrus precentralis", - "M1", - "motor area", - "motor cortex", - "prefrontal gyrus", - "primary motor area", - "Rolando's area", - "somatic motor areas", - "somatomotor areas" - ] -} diff --git a/instances/UBERONParcellation/primaryOlfactoryCortex.jsonld b/instances/UBERONParcellation/primaryOlfactoryCortex.jsonld deleted file mode 100644 index 7f3a0d9bc..000000000 --- a/instances/UBERONParcellation/primaryOlfactoryCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primaryOlfactoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary olfactory cortex' is a regional part of brain. It is part of the olfactory cortex.", - "description": "The term primary olfactory areas in the primate, refers to a group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109283", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022469#primary-olfactory-cortex-1", - "name": "primary olfactory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022469", - "synonym": [ - "primary olfactory areas" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer1.jsonld b/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer1.jsonld deleted file mode 100644 index ce31b894a..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer1.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer1", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory area barrel field layer 1' is a layer of neocortex. It is part of the barrel cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109286", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035873#primary-somatosensory-area-barrel-field-layer-1", - "name": "primary somatosensory area barrel field layer 1", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035873", - "synonym": [ - "SSp-bfd1" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer4.jsonld b/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer4.jsonld deleted file mode 100644 index 63e4a01f9..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer4.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer4", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory area barrel field layer 4' is a layer of neocortex. It is part of the barrel cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109288", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035877#primary-somatosensory-area-barrel-field-layer-4", - "name": "primary somatosensory area barrel field layer 4", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035877", - "synonym": [ - "barrel cortex layer 4", - "SSp-bfd4" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer5.jsonld b/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer5.jsonld deleted file mode 100644 index de51062ab..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer5.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer5", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory area barrel field layer 5' is a layer of neocortex. It is part of the barrel cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109290", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035872#primary-somatosensory-area-barrel-field-layer-5", - "name": "primary somatosensory area barrel field layer 5", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035872", - "synonym": [ - "barrel cortex layer 5", - "barrel cortex layer 5,", - "SSp-bfd5" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6a.jsonld b/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6a.jsonld deleted file mode 100644 index 9c58e9bdf..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6a.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6a", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory area barrel field layer 6a' is a layer of neocortex. It is part of the barrel cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109292", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035876#primary-somatosensory-area-barrel-field-layer-6a", - "name": "primary somatosensory area barrel field layer 6a", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035876", - "synonym": [ - "Barrel cortex layer 6A", - "SSp-bfd6a" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6b.jsonld b/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6b.jsonld deleted file mode 100644 index 77bc76814..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6b.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryAreaBarrelFieldLayer6b", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory area barrel field layer 6b' is a layer of neocortex. It is part of the barrel cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109294", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035875#primary-somatosensory-area-barrel-field-layer-6b", - "name": "primary somatosensory area barrel field layer 6b", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035875", - "synonym": [ - "Barrel cortex layer 6B", - "SSp-bfd6b" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryCortex.jsonld b/instances/UBERONParcellation/primarySomatosensoryCortex.jsonld deleted file mode 100644 index f238e898e..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryCortex.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory cortex' is a somatosensory cortex. It is part of the parietal cortex.", - "description": "(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker ('71,'76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the rat's cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the \"granular aggregate\" type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the \"barrel-field\" type (originally described by Woolsey and Van der Loos, '70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, '74).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109333", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008933#primary-somatosensory-cortex", - "name": "primary somatosensory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008933", - "synonym": [ - "areas 3,1,2)", - "postcentral gyrus", - "primary somatosensory area", - "primary somatosensory cortex (area S1", - "S1", - "S1C", - "Sm1", - "somatosensory area 1" - ] -} diff --git a/instances/UBERONParcellation/primarySomatosensoryCortexLayer6.jsonld b/instances/UBERONParcellation/primarySomatosensoryCortexLayer6.jsonld deleted file mode 100644 index 6c6b345b6..000000000 --- a/instances/UBERONParcellation/primarySomatosensoryCortexLayer6.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySomatosensoryCortexLayer6", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary somatosensory cortex layer 6' is a layer of neocortex. It is part of the primary somatosensory cortex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109334", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023859#primary-somatosensory-cortex-lamina-vi", - "name": "primary somatosensory cortex layer 6", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023859", - "synonym": [ - "primary somatosensory cortex lamina VI", - "primary somatosensory cortex layer 6" - ] -} diff --git a/instances/UBERONParcellation/primarySuperiorOlive.jsonld b/instances/UBERONParcellation/primarySuperiorOlive.jsonld deleted file mode 100644 index 798c673e2..000000000 --- a/instances/UBERONParcellation/primarySuperiorOlive.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primarySuperiorOlive", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary superior olive' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the superior olivary complex.", - "description": "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111314", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022434#superior-olive", - "name": "primary superior olive", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022434", - "synonym": [ - "SOl", - "superior olive" - ] -} diff --git a/instances/UBERONParcellation/primaryVisualCortex.jsonld b/instances/UBERONParcellation/primaryVisualCortex.jsonld deleted file mode 100644 index 689eadd4f..000000000 --- a/instances/UBERONParcellation/primaryVisualCortex.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/primaryVisualCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Primary visual cortex' is a Brodmann area and functional part of brain. It is part of the visual cortex.", - "description": "Region of visual cortex that receives visual input from the eyes through the lateral geniculate nuclei (Sadato et al., 1996, PMID: 8606771).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112514", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002436#primary-visual-cortex", - "name": "primary visual cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002436", - "synonym": [ - "Area 17 of Brodmann", - "area 17 of Brodmann-1909", - "area striata", - "b09-17", - "B09-17", - "BA17", - "Brodmann (1909) area 17", - "Brodmann area 17", - "calcarine cortex", - "nerve X", - "occipital visual neocortex", - "primary visual area", - "primary visual cortex", - "striate", - "striate area", - "striate cortex", - "V1", - "visual area one", - "visual area V1", - "visual association area", - "visual association cortex" - ] -} diff --git a/instances/UBERONParcellation/principalAnteriorDivisionOfSupraopticNucleus.jsonld b/instances/UBERONParcellation/principalAnteriorDivisionOfSupraopticNucleus.jsonld deleted file mode 100644 index 0da4ea452..000000000 --- a/instances/UBERONParcellation/principalAnteriorDivisionOfSupraopticNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/principalAnteriorDivisionOfSupraopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Principal anterior division of supraoptic nucleus' is a regional part of brain.", - "description": "One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109347", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024078#principal-anterior-division-of-supraoptic-nucleus-1", - "name": "principal anterior division of supraoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024078", - "synonym": [ - "SONa", - "principal anterior division of supraoptic nucleus" - ] -} diff --git a/instances/UBERONParcellation/principalPartOfVentralPosteromedialNucleus.jsonld b/instances/UBERONParcellation/principalPartOfVentralPosteromedialNucleus.jsonld deleted file mode 100644 index 3f276e743..000000000 --- a/instances/UBERONParcellation/principalPartOfVentralPosteromedialNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/principalPartOfVentralPosteromedialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Principal part of ventral posteromedial nucleus' is a gray matter of diencephalon. It is part of the ventral posteromedial nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109352", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003024#principal-part-of-ventral-posteromedial-nucleus-1", - "name": "principal part of ventral posteromedial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003024", - "synonym": [ - "nucleus ventralis posteromedialis", - "pars principalis", - "pars prinicipalis", - "principal part", - "principal part of the ventral posteromedial nucleus", - "ventral posteromedial nucleus", - "VPMPr" - ] -} diff --git a/instances/UBERONParcellation/principalPretectalNucleus.jsonld b/instances/UBERONParcellation/principalPretectalNucleus.jsonld deleted file mode 100644 index b54eaa845..000000000 --- a/instances/UBERONParcellation/principalPretectalNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/principalPretectalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Principal pretectal nucleus' is a nucleus of midbrain tectum and pretectal nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109353", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002572#principal-pretectal-nucleus-1", - "name": "principal pretectal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002572", - "synonym": [ - "nucleus pretectalis principalis" - ] -} diff --git a/instances/UBERONParcellation/principalSensoryNucleusOfTrigeminalNerve.jsonld b/instances/UBERONParcellation/principalSensoryNucleusOfTrigeminalNerve.jsonld deleted file mode 100644 index 2a846a46f..000000000 --- a/instances/UBERONParcellation/principalSensoryNucleusOfTrigeminalNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/principalSensoryNucleusOfTrigeminalNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Principal sensory nucleus of trigeminal nerve' is a trigeminal sensory nucleus, brainstem nucleus and hindbrain nucleus. It is part of the pontine tegmentum.", - "description": "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109355", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002597#principal-sensory-nucleus-of-trigeminal-nerve-1", - "name": "principal sensory nucleus of trigeminal nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002597", - "synonym": null -} diff --git a/instances/UBERONParcellation/putamen.jsonld b/instances/UBERONParcellation/putamen.jsonld deleted file mode 100644 index 106d3ba97..000000000 --- a/instances/UBERONParcellation/putamen.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/putamen", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Putamen' is a telencephalic nucleus. It is part of the cerebral hemisphere and caudate-putamen.", - "description": "Subcortical nucleus of telencephalon , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109549", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001874#putamen-1", - "name": "putamen", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001874", - "synonym": [ - "Pu", - "nucleus putamen" - ] -} diff --git a/instances/UBERONParcellation/pyramidalLayerOfCA1.jsonld b/instances/UBERONParcellation/pyramidalLayerOfCA1.jsonld deleted file mode 100644 index 638322f2f..000000000 --- a/instances/UBERONParcellation/pyramidalLayerOfCA1.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pyramidalLayerOfCA1", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pyramidal layer of CA1' is a layer of CA1 field. It is part of the hippocampus pyramidal layer.", - "description": "Part of pyramidal cell layer lying in area CA1, superficial to the CA1 stratum oriens, and deep to the stratum radiatum of CA1, continuous with the pyramidal cell layers of CA2 and the subiculum. It is characterized by pyramidal cell bodies that are generally smaller in size than those in the other hippocampal sectors.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101525", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014549#ca2-stratum-pyramidale-hippocampi", - "name": "pyramidal layer of CA1", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014548", - "synonym": [ - "CA1 part of stratum pyramidale", - "CA1 part of stratum pyramidale hippocampi", - "CA1 pyramidal cell layer", - "CA1 stratum pyramidale", - "CA1 stratum pyramidale hippocampi", - "stratum pyramidale of CA1", - "stratum pyramidale of the CA1 field" - ] -} diff --git a/instances/UBERONParcellation/pyramidalLayerOfCA2.jsonld b/instances/UBERONParcellation/pyramidalLayerOfCA2.jsonld deleted file mode 100644 index 774f9a7b8..000000000 --- a/instances/UBERONParcellation/pyramidalLayerOfCA2.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/pyramidalLayerOfCA2", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Pyramidal layer of CA2' is a layer of CA2 field. It is part of the hippocampus pyramidal layer.", - "description": "Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101532", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014549#ca2-stratum-pyramidale-hippocampi", - "name": "pyramidal layer of CA2", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014549", - "synonym": [ - "CA2 part of stratum pyramidale hippocampi", - "CA2 pyramidal cell layer", - "CA2 stratum pyramidale hippocampi", - "field CA2", - "pyramidal layer", - "stratum pyramidale of CA2", - "stratum pyramidale of the CA2 field" - ] -} diff --git a/instances/UBERONParcellation/radiationOfThalamus.jsonld b/instances/UBERONParcellation/radiationOfThalamus.jsonld deleted file mode 100644 index 29f641f17..000000000 --- a/instances/UBERONParcellation/radiationOfThalamus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/radiationOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'radiation of thalamus' is a white matter fibre bundle. It is part of of the thalamic complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724984", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034745#radiation-of-thalamus", - "name": "radiation of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034745", - "synonym": [ - "thalamic radiation", - "thalamus radiation" - ] -} diff --git a/instances/UBERONParcellation/redNucleus.jsonld b/instances/UBERONParcellation/redNucleus.jsonld deleted file mode 100644 index 273d984c0..000000000 --- a/instances/UBERONParcellation/redNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/redNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Red nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "Format for scripts written in the R language - an open source programming language and software environment for statistical computing and graphics that is supported by the R Foundation for Statistical Computing.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109722", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001947#red-nucleus-1", - "name": "red nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001947", - "synonym": [ - "nucleus rotundus subthalamo-peduncularis", - "nucleus ruber", - "nucleus ruber tegmenti", - "nucleus ruber tegmenti (Stilling)", - "R", - "R program", - "red nucleus (Burdach)" - ] -} diff --git a/instances/UBERONParcellation/regionalPartOfBrain.jsonld b/instances/UBERONParcellation/regionalPartOfBrain.jsonld deleted file mode 100644 index 3fa1a8eb0..000000000 --- a/instances/UBERONParcellation/regionalPartOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/regionalPartOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Regional part of brain' is a regional part of nervous system. It is part of the brain.", - "description": "Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109835", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002616#regional-part-of-brain-1", - "name": "regional part of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002616", - "synonym": null -} diff --git a/instances/UBERONParcellation/regionalPartOfCerebellarCortex.jsonld b/instances/UBERONParcellation/regionalPartOfCerebellarCortex.jsonld deleted file mode 100644 index 7c79e54c5..000000000 --- a/instances/UBERONParcellation/regionalPartOfCerebellarCortex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/regionalPartOfCerebellarCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Regional part of cerebellar cortex' is a regional part of brain. It is part of the cerebellar cortex.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109837", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002749#regional-part-of-cerebellar-cortex-1", - "name": "regional part of cerebellar cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002749", - "synonym": null -} diff --git a/instances/UBERONParcellation/reticularFormation.jsonld b/instances/UBERONParcellation/reticularFormation.jsonld deleted file mode 100644 index be38048a5..000000000 --- a/instances/UBERONParcellation/reticularFormation.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/reticularFormation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Reticular formation' is a regional part of brain. It is part of the brainstem.", - "description": "A composite substructure of the brainstem that consists of the midbrain reticular formation, the pontine reticular formation and the medullary reticular formation ( Carpenter-1983 ).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109987", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002275#reticular-formation", - "name": "reticular formation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002275", - "synonym": [ - "brain stem reticular formation", - "brainstem reticular formation", - "reticular formation (classical)", - "reticular formation of the brainstem" - ] -} diff --git a/instances/UBERONParcellation/reticulotegmentalNucleus.jsonld b/instances/UBERONParcellation/reticulotegmentalNucleus.jsonld deleted file mode 100644 index b42eabaeb..000000000 --- a/instances/UBERONParcellation/reticulotegmentalNucleus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/reticulotegmentalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Reticulotegmental nucleus' is a brainstem nucleus and hindbrain nucleus. It is part of the pons and reticular formation.", - "description": "The tegmental pontine reticular nucleus (or pontine reticular nucleus of the tegmentum) is an area within the floor of the midbrain. This area is known to affect the cerebellum with its axonal projections. These efferent connections have been proven to project not only ipsilaterally, but also to decussate and project to the contralateral side of the vermis. It has also been shown that the projections from the tegmenti pontis to the cerebellar lobes are only crossed fibers. The n.r. tegmenti pontis also receives afferent axons from the cerebellum. This nucleus is known for its large amount of multipolar cells and its particularly reticular structure. The n.r. tegmenti pontis is topographically related to pontine nuclei (non-reticular), being just dorsal to them. The nucleus reticularis has been known to mediate eye movements, otherwise known as so-called saccadic movement. This makes sense concerning their connections as it would require a nucleus which receives and projects to the cerebellum to mediate that kind of complex circuitry. Also, behaviorally this makes sense as no one thinks about saccadic movements when scanning a room and the saccadic movements are not directly controlled by the cortex. The nuclei of the cerebellum are the most traditionally studied mostly because it is easy to see which nuclei degrade when the cerebellum is amputated. The neurons of the lateral reticular formation are very important for reflexes and the mediation of posture. It has been shown in cats that electrical stimulation of the reticular formation can make a standing cat lie down. Conversely if the cat is stimulated in an alternate spot it can make a lying cat stand.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109992", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002147#reticulotegmental-nucleus-1", - "name": "reticulotegmental nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002147", - "synonym": [ - "nucleus reticularis tegmenti pontis", - "pontine gray", - "reticular tegmental nucleus", - "reticulotegmental nucleus of pons", - "reticulotegmental nucleus of the pons", - "reticulotegmental pontine nucleus", - "tegmental reticular nucleus" - ] -} diff --git a/instances/UBERONParcellation/retrochiasmaticArea.jsonld b/instances/UBERONParcellation/retrochiasmaticArea.jsonld deleted file mode 100644 index 75df0d7e3..000000000 --- a/instances/UBERONParcellation/retrochiasmaticArea.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/retrochiasmaticArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Retrochiasmatic area' is part of the medial zone of hypothalamus and intermediate hypothalamic region.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726953", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001933#retrochiasmatic-area-1", - "name": "retrochiasmatic area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001933", - "synonym": null -} diff --git a/instances/UBERONParcellation/retrorubralAreaOfMidbrainReticularNucleus.jsonld b/instances/UBERONParcellation/retrorubralAreaOfMidbrainReticularNucleus.jsonld deleted file mode 100644 index c79f95f54..000000000 --- a/instances/UBERONParcellation/retrorubralAreaOfMidbrainReticularNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/retrorubralAreaOfMidbrainReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Retrorubral area of midbrain reticular nucleus' is a regional part of brain. It is part of the nucleus of midbrain reticular formation.", - "description": "The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733931", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011172#retrorubral-area-of-midbrain-reticular-nucleus", - "name": "retrorubral area of midbrain reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011172", - "synonym": null -} diff --git a/instances/UBERONParcellation/retrotrapezoidNucleus.jsonld b/instances/UBERONParcellation/retrotrapezoidNucleus.jsonld deleted file mode 100644 index d37670552..000000000 --- a/instances/UBERONParcellation/retrotrapezoidNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/retrotrapezoidNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Retrotrapezoid nucleus' is a nucleus of medulla oblongata.", - "description": "Group of cells in the rostral medulla close to the ventral surface, near to the trapezoid body", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110082", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009918#retrotrapezoid-nucleus", - "name": "retrotrapezoid nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009918", - "synonym": [ - "" - ] -} diff --git a/instances/UBERONParcellation/reuniensNucleus.jsonld b/instances/UBERONParcellation/reuniensNucleus.jsonld deleted file mode 100644 index a49e09e39..000000000 --- a/instances/UBERONParcellation/reuniensNucleus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/reuniensNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Reuniens nucleus' is a nucleus of dorsal thalamus. It is part of the midline nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110085", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001921#reuniens-nucleus-1", - "name": "reuniens nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001921", - "synonym": [ - "medioventral nucleus", - "nucleus endymalis (Hassler)", - "nucleus of reunions", - "nucleus reuniens", - "nucleus reuniens (Malone)", - "nucleus reuniens thalami", - "Re", - "reuniens nucleus of the thalamus", - "reuniens thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/rhinalSulcus.jsonld b/instances/UBERONParcellation/rhinalSulcus.jsonld deleted file mode 100644 index e16368adf..000000000 --- a/instances/UBERONParcellation/rhinalSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rhinalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rhinal sulcus' is a sulcus of brain. It is part of the cerebral cortex.", - "description": "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110119", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002683#rhinal-sulcus-1", - "name": "rhinal sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002683", - "synonym": null -} diff --git a/instances/UBERONParcellation/rhombicLip.jsonld b/instances/UBERONParcellation/rhombicLip.jsonld deleted file mode 100644 index bbbce1d17..000000000 --- a/instances/UBERONParcellation/rhombicLip.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rhombicLip", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rhombic lip' is part of the future metencephalon.", - "description": "The posterior section of the developing metencephalon recognized transiently within the vertebrate embryo; the rhombic lip extends posteriorly from the roof of the fourth ventricle to dorsal neuroepithelial cell and can be divided into eight structural units based on rhombomeres 1-8 (r1-r8), recognized at early stages of hindbrain development; producing granule cells and five brainstem nuclei, the rhombic lip plays an important role in developing a complex cerebellar neural system.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727583", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006215#rhombic-lip", - "name": "rhombic lip", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006215", - "synonym": null -} diff --git a/instances/UBERONParcellation/rhomboidalNucleus.jsonld b/instances/UBERONParcellation/rhomboidalNucleus.jsonld deleted file mode 100644 index e33f7778c..000000000 --- a/instances/UBERONParcellation/rhomboidalNucleus.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rhomboidalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rhomboidal nucleus' is a nucleus of dorsal thalamus. It is part of the midline nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110128", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002955#rhomboidal-nucleus-1", - "name": "rhomboidal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002955", - "synonym": [ - "nucleus commissuralis rhomboidalis", - "nucleus rhomboidalis", - "nucleus rhomboidalis thalami", - "Rh", - "rhomboid nucleus", - "rhomboid nucleus (Cajal 1904)", - "rhomboid nucleus of the thalamus", - "rhomboid thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/rootOfAbducensNerve.jsonld b/instances/UBERONParcellation/rootOfAbducensNerve.jsonld deleted file mode 100644 index da92fb887..000000000 --- a/instances/UBERONParcellation/rootOfAbducensNerve.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rootOfAbducensNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Root of abducens nerve' is a root of cranial nerve. It is part of the medulla oblongata.", - "description": "Nerve fibers arising from motor neurons in the abducens nucleus that are contained within the pontine tegmentum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0100173", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002786#abducens-nerve-fibers", - "name": "root of abducens nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002786", - "synonym": [ - "abducens nerve fibers", - "abducens nerve root", - "abducens nerve tract", - "abducens nerve/root", - "central part of abducens nerve", - "fibrae nervi abducentis", - "root of abducens nerve" - ] -} diff --git a/instances/UBERONParcellation/rootOfOlfactoryNerve.jsonld b/instances/UBERONParcellation/rootOfOlfactoryNerve.jsonld deleted file mode 100644 index e1799821c..000000000 --- a/instances/UBERONParcellation/rootOfOlfactoryNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rootOfOlfactoryNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The initial segment of an olfactory nerve, leaving the central nervous system.", - "description": "'Root of olfactory nerve' is a nerve root.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727253", - "knowledgeSpaceLink": null, - "name": "root of olfactory nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019311", - "synonym": null -} diff --git a/instances/UBERONParcellation/rootOfOpticNerve.jsonld b/instances/UBERONParcellation/rootOfOpticNerve.jsonld deleted file mode 100644 index 8a53afa65..000000000 --- a/instances/UBERONParcellation/rootOfOpticNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rootOfOpticNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A nerve root that extends_fibers_into a nerve connecting eye with brain.", - "description": "'Root of optic nerve' is a root of cranial nerve.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728874", - "knowledgeSpaceLink": null, - "name": "root of optic nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009906", - "synonym": null -} diff --git a/instances/UBERONParcellation/rootOfTrochlearNerve.jsonld b/instances/UBERONParcellation/rootOfTrochlearNerve.jsonld deleted file mode 100644 index bd36cff6e..000000000 --- a/instances/UBERONParcellation/rootOfTrochlearNerve.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rootOfTrochlearNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Root of trochlear nerve' is a root of cranial nerve. It is part of the brainstem.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112003", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002618#trochlear-nerve-fibers", - "name": "root of trochlear nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002618", - "synonym": [ - "4nf", - "central part of trochlear nerve", - "fibrae nervi trochlearis", - "trochlear nerve fibers", - "trochlear nerve or its root", - "trochlear nerve root", - "trochlear nerve tract", - "trochlear nerve/root" - ] -} diff --git a/instances/UBERONParcellation/rootOfVagusNerve.jsonld b/instances/UBERONParcellation/rootOfVagusNerve.jsonld deleted file mode 100644 index bddac02ab..000000000 --- a/instances/UBERONParcellation/rootOfVagusNerve.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rootOfVagusNerve", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A root of cranial nerve that is part of a vagus nerve.", - "description": "'Root of vagus nerve' is a nerve root.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731734", - "knowledgeSpaceLink": null, - "name": "root of vagus nerve", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011213", - "synonym": null -} diff --git a/instances/UBERONParcellation/rostralAnteriorCingulateCortex.jsonld b/instances/UBERONParcellation/rostralAnteriorCingulateCortex.jsonld deleted file mode 100644 index dbe8b67c0..000000000 --- a/instances/UBERONParcellation/rostralAnteriorCingulateCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralAnteriorCingulateCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral anterior cingulate cortex' is a regional part of brain. It is part of the anterior cingulate cortex.", - "description": "Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110204", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022438#rostral-anterior-cingulate-cortex-1", - "name": "rostral anterior cingulate cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022438", - "synonym": [ - "rostral anterior cingulate cortex" - ] -} diff --git a/instances/UBERONParcellation/rostralInterstitialNucleusOfMedialLongitudinalFasciculus.jsonld b/instances/UBERONParcellation/rostralInterstitialNucleusOfMedialLongitudinalFasciculus.jsonld deleted file mode 100644 index 319d77846..000000000 --- a/instances/UBERONParcellation/rostralInterstitialNucleusOfMedialLongitudinalFasciculus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralInterstitialNucleusOfMedialLongitudinalFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral interstitial nucleus of medial longitudinal fasciculus' is a brainstem nucleus, nucleus of midbrain tegmentum and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110210", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002717#rostral-interstitial-nucleus-of-medial-longitudinal-fasciculus-1", - "name": "rostral interstitial nucleus of medial longitudinal fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002717", - "synonym": [ - "nucleus interstitialis", - "nucleus interstitialis rostralis", - "RI", - "riMLF", - "Rostral interstitial nucleus of MLF", - "rostral interstitial nucleus of the medial longitudinal fasciculus" - ] -} diff --git a/instances/UBERONParcellation/rostralIntralaminarNuclearGroup.jsonld b/instances/UBERONParcellation/rostralIntralaminarNuclearGroup.jsonld deleted file mode 100644 index e26b012c1..000000000 --- a/instances/UBERONParcellation/rostralIntralaminarNuclearGroup.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralIntralaminarNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral intralaminar nuclear group' is a nucleus of dorsal thalamus. It is part of the intralaminar nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110211", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002965#rostral-intralaminar-nuclei", - "name": "rostral intralaminar nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002965", - "synonym": [ - "anterior group of intralaminar nuclei", - "nuclei intralaminares rostrales", - "RIL", - "rostral group of intralaminar nuclei", - "rostral intralaminar nuclear group", - "rostral intralaminar nuclei" - ] -} diff --git a/instances/UBERONParcellation/rostralLinearNucleus.jsonld b/instances/UBERONParcellation/rostralLinearNucleus.jsonld deleted file mode 100644 index 2f8f6f70b..000000000 --- a/instances/UBERONParcellation/rostralLinearNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralLinearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral linear nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the ventral tegmental area.", - "description": "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110212", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013734#rostral-linear-nucleus-1", - "name": "rostral linear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013734", - "synonym": [ - "anterior linear nucleus", - "RLi", - "rostral linear nucleus of the raphe" - ] -} diff --git a/instances/UBERONParcellation/rostralMiddleFrontalGyrus.jsonld b/instances/UBERONParcellation/rostralMiddleFrontalGyrus.jsonld deleted file mode 100644 index 390394b6c..000000000 --- a/instances/UBERONParcellation/rostralMiddleFrontalGyrus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralMiddleFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral middle frontal gyrus' is a regional part of brain and frontal gyrus. It is part of the middle frontal gyrus.", - "description": "Component of the middl frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110215", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006446#rostral-middle-frontal-gyrus-1", - "name": "rostral middle frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006446", - "synonym": [ - "anterior part of middle frontal gyrus", - "rostral middle frontal gyrus", - "rostral part of middle frontal gyrus" - ] -} diff --git a/instances/UBERONParcellation/rostralMigratoryStream.jsonld b/instances/UBERONParcellation/rostralMigratoryStream.jsonld deleted file mode 100644 index 6c69e03d2..000000000 --- a/instances/UBERONParcellation/rostralMigratoryStream.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralMigratoryStream", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral migratory stream' is a regional part of brain. It is part of the telencephalon.", - "description": "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110216", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008881#rostral-migratory-stream-1", - "name": "rostral migratory stream", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008881", - "synonym": [ - "RMS", - "rostral migratory pathway" - ] -} diff --git a/instances/UBERONParcellation/rostralPortionOfTheMedialAccessoryOlive.jsonld b/instances/UBERONParcellation/rostralPortionOfTheMedialAccessoryOlive.jsonld deleted file mode 100644 index 096278ca6..000000000 --- a/instances/UBERONParcellation/rostralPortionOfTheMedialAccessoryOlive.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralPortionOfTheMedialAccessoryOlive", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral portion of the medial accessory olive' is a regional part of brain. It is part of the inferior olivary complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110220", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024043#rostral-portion-of-the-medial-accessory-olive-1", - "name": "rostral portion of the medial accessory olive", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024043", - "synonym": [ - "RMAO", - "rostral portion of the medial accessory olive" - ] -} diff --git a/instances/UBERONParcellation/rostralSpinocerebellarTract.jsonld b/instances/UBERONParcellation/rostralSpinocerebellarTract.jsonld deleted file mode 100644 index aa82c4cac..000000000 --- a/instances/UBERONParcellation/rostralSpinocerebellarTract.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostralSpinocerebellarTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Rostral spinocerebellar tract' is an axon tract. It is part of the spinocerebellar tract.", - "description": "Cervical equivalent to the ventral spinocerebellar tract (Heimer, L: The Human Brain and Spinal Cord, 1995, pg 370). Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110223", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023984#rostral-spinocerebellar-tract-1", - "name": "rostral spinocerebellar tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023984", - "synonym": [ - "rostral spinocerebellar tract" - ] -} diff --git a/instances/UBERONParcellation/rostrumOfCorpusCallosum.jsonld b/instances/UBERONParcellation/rostrumOfCorpusCallosum.jsonld deleted file mode 100644 index 7e8ef40d9..000000000 --- a/instances/UBERONParcellation/rostrumOfCorpusCallosum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/rostrumOfCorpusCallosum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'rostrum of corpus callosum' is a white matter fibre bundle. It is part of the corpus callosum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731510", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015703#rostrum-of-corpus-callosum", - "name": "rostrum of corpus callosum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015703", - "synonym": [ - "corpus callosum rostrum", - "rostrum", - "rostrum corporis callosi", - "rostrum corpus callosi" - ] -} diff --git a/instances/UBERONParcellation/secondaryOlfactoryCortex.jsonld b/instances/UBERONParcellation/secondaryOlfactoryCortex.jsonld deleted file mode 100644 index 72e100425..000000000 --- a/instances/UBERONParcellation/secondaryOlfactoryCortex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/secondaryOlfactoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Secondary olfactory cortex' is a regional part of brain. It is part of the olfactory cortex.", - "description": "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed) (MSH)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110447", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002895#secondary-olfactory-cortex-1", - "name": "secondary olfactory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002895", - "synonym": [ - "area 28 of Brodmann (Crosby)", - "entorhinal cortex", - "secondary olfactory areas", - "secondary olfactory cortex", - "secondary olfactory cortical area (Carpenter)" - ] -} diff --git a/instances/UBERONParcellation/secondaryVisualCortex.jsonld b/instances/UBERONParcellation/secondaryVisualCortex.jsonld deleted file mode 100644 index 9f417a0aa..000000000 --- a/instances/UBERONParcellation/secondaryVisualCortex.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/secondaryVisualCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Secondary visual cortex' is part of Brodmann area 18 and a functional region of the brain. It is part of the visual cortex.", - "description": "A region of the visual cortex adjacent and strongly connected to the primary visual cortex. It plays an important role in the analysis and discrimination of visual input related to motion, complex shapes, and position. A part of the visual assocation area.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727119", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022232#secondary-visual-cortex", - "name": "secondary visual cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022232", - "synonym": [ - "Area 18 of Brodmann", - "area 18 of Brodmann-1909", - "b09-18", - "B09-18", - "BA18", - "Brodmann (1909) area 18", - "Brodmann area 18", - "occipital visual neocortex", - "prestriate area", - "prestriate cortex", - "secondary visual area", - "secondary visual cortex", - "V2", - "visual area two", - "visual area V2", - "visual association area", - "visual association cortex" - ] -} diff --git a/instances/UBERONParcellation/segmentalSubdivisionOfHindbrain.jsonld b/instances/UBERONParcellation/segmentalSubdivisionOfHindbrain.jsonld deleted file mode 100644 index be688f3ad..000000000 --- a/instances/UBERONParcellation/segmentalSubdivisionOfHindbrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/segmentalSubdivisionOfHindbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Segmental subdivision of hindbrain' is a segmental subdivision of nervous system. It is part of the hindbrain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729200", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004733#segmental-subdivision-of-hindbrain", - "name": "segmental subdivision of hindbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004733", - "synonym": null -} diff --git a/instances/UBERONParcellation/septalNuclearComplex.jsonld b/instances/UBERONParcellation/septalNuclearComplex.jsonld deleted file mode 100644 index 9a970ed13..000000000 --- a/instances/UBERONParcellation/septalNuclearComplex.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/septalNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Septal nuclear complex' is a cerebral hemisphere gray matter and nuclear complex of neuraxis. It is part of the septum of telencephalon and basal forebrain.", - "description": "Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110508", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002663#septal-nuclear-complex-1", - "name": "septal nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002663", - "synonym": [ - "nuclei septales", - "parolfactory nuclei", - "septal nuclei", - "septal nuclei and related structures", - "septal nuclei set", - "septal nucleus", - "set of septal nuclei" - ] -} diff --git a/instances/UBERONParcellation/septofimbrialNucleus.jsonld b/instances/UBERONParcellation/septofimbrialNucleus.jsonld deleted file mode 100644 index fee99fa18..000000000 --- a/instances/UBERONParcellation/septofimbrialNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/septofimbrialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Septofimbrial nucleus' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110511", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001878#septofimbrial-nucleus-1", - "name": "septofimbrial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001878", - "synonym": [ - "nucleus septalis fimbrialis", - "nucleus septofibrialis", - "nucleus septofimbrialis", - "scattered nucleus of the septum", - "SFi" - ] -} diff --git a/instances/UBERONParcellation/septohippocampalNucleus.jsonld b/instances/UBERONParcellation/septohippocampalNucleus.jsonld deleted file mode 100644 index a52828f11..000000000 --- a/instances/UBERONParcellation/septohippocampalNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/septohippocampalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Septohippocampal nucleus' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": "Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110513", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007630#septohippocampal-nucleus", - "name": "septohippocampal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007630", - "synonym": [ - "SHi" - ] -} diff --git a/instances/UBERONParcellation/septumOfTelencephalon.jsonld b/instances/UBERONParcellation/septumOfTelencephalon.jsonld deleted file mode 100644 index 66e45fe55..000000000 --- a/instances/UBERONParcellation/septumOfTelencephalon.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/septumOfTelencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996).", - "description": "'Septum of telencephalon' is a cerebral hemisphere gray matter.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110516", - "knowledgeSpaceLink": null, - "name": "septum of telencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000446", - "synonym": null -} diff --git a/instances/UBERONParcellation/septumPellucidum.jsonld b/instances/UBERONParcellation/septumPellucidum.jsonld deleted file mode 100644 index 9c2b4c6e2..000000000 --- a/instances/UBERONParcellation/septumPellucidum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/septumPellucidum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Septum pellucidum' is part of the septum of telencephalon and telencephalic ventricle.", - "description": "A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110509", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004714#septal-pellucidum", - "name": "septum pellucidum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004714", - "synonym": [ - "lateral septum", - "medial septum", - "pellucidum", - "septal pellucidum", - "septum gliosum", - "septum lucidum", - "septum pellucidum of telencephalic ventricle", - "supracommissural septum" - ] -} diff --git a/instances/UBERONParcellation/shellOfNucleusAccumbens.jsonld b/instances/UBERONParcellation/shellOfNucleusAccumbens.jsonld deleted file mode 100644 index 2d66cb5b7..000000000 --- a/instances/UBERONParcellation/shellOfNucleusAccumbens.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/shellOfNucleusAccumbens", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Shell of nucleus accumbens' is a regional part of brain. It is part of the nucleus accumbens.", - "description": "Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110602", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0012171#shell-of-nucleus-accumbens-1", - "name": "shell of nucleus accumbens", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0012171", - "synonym": [ - "AcbSH", - "accumbens nucleus", - "accumbens nucleus shell", - "nucleus accumbens shell", - "shell", - "shell of nucleus accumbens", - "shell region of nucleus accumbens" - ] -} diff --git a/instances/UBERONParcellation/somatosensoryCortex.jsonld b/instances/UBERONParcellation/somatosensoryCortex.jsonld deleted file mode 100644 index 5e960ddea..000000000 --- a/instances/UBERONParcellation/somatosensoryCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/somatosensoryCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110752", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008930#somatosensory-cortex", - "name": "somatosensory cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008930", - "synonym": [ - "somatic sensory cortex" - ] -} diff --git a/instances/UBERONParcellation/sommersSector.jsonld b/instances/UBERONParcellation/sommersSector.jsonld deleted file mode 100644 index d308b5857..000000000 --- a/instances/UBERONParcellation/sommersSector.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/sommersSector", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Sommer's sector' is a regional part of brain. It is part of the hippocampal formation.", - "description": "Part of hippocampal formation comprising area CA1 and the subiculum (pg 425, Heimer, L. The human brain and spinal cord, Springer-Verlag, 1995)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110759", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023932#sommer-s-sector-1", - "name": "Sommer's sector", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023932", - "synonym": [ - "sommer's sector", - "sommers sector" - ] -} diff --git a/instances/UBERONParcellation/spinalTrigeminalTractOfMedulla.jsonld b/instances/UBERONParcellation/spinalTrigeminalTractOfMedulla.jsonld deleted file mode 100644 index 788980633..000000000 --- a/instances/UBERONParcellation/spinalTrigeminalTractOfMedulla.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinalTrigeminalTractOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinal trigeminal tract of medulla' is a spinal trigeminal tract. It is part of the medulla oblongata.", - "description": "Part of spinal trigeminal tract located in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110958", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002715#spinal-trigeminal-tract-of-medulla-1", - "name": "spinal trigeminal tract of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002715", - "synonym": [ - "spinal trigeminal tract of the medulla", - "tractus spinalis nervi trigemini (myelencephali)" - ] -} diff --git a/instances/UBERONParcellation/spinalTrigeminalTractOfPons.jsonld b/instances/UBERONParcellation/spinalTrigeminalTractOfPons.jsonld deleted file mode 100644 index 1ab2e301c..000000000 --- a/instances/UBERONParcellation/spinalTrigeminalTractOfPons.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinalTrigeminalTractOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinal trigeminal tract of pons' is a spinal trigeminal tract. It is part of the pontine tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110959", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002800#spinal-trigeminal-tract-of-pons-1", - "name": "spinal trigeminal tract of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002800", - "synonym": [ - "spinal trigeminal tract of the pons", - "tractus spinalis nervi trigemini (pontis)" - ] -} diff --git a/instances/UBERONParcellation/spinocerebellum.jsonld b/instances/UBERONParcellation/spinocerebellum.jsonld deleted file mode 100644 index 71ec356a9..000000000 --- a/instances/UBERONParcellation/spinocerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinocerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinocerebellum' is a regional part of brain. It is part of the cerebellum.", - "description": "A phylogenetic subdivision of the cerebellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734938", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014643#spinocerebellum", - "name": "spinocerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014643", - "synonym": null -} diff --git a/instances/UBERONParcellation/spinothalamicTract.jsonld b/instances/UBERONParcellation/spinothalamicTract.jsonld deleted file mode 100644 index d143529dd..000000000 --- a/instances/UBERONParcellation/spinothalamicTract.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinothalamicTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'spinothalamic tract' is a white matter fibre bundle. It originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110973", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007703#spinothalamic-tract-1", - "name": "spinothalamic tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007703", - "synonym": [ - "spth" - ] -} diff --git a/instances/UBERONParcellation/spinothalamicTractOfMedulla.jsonld b/instances/UBERONParcellation/spinothalamicTractOfMedulla.jsonld deleted file mode 100644 index af2435cbd..000000000 --- a/instances/UBERONParcellation/spinothalamicTractOfMedulla.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinothalamicTractOfMedulla", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinothalamic tract of medulla' is a tract of brain. It is part of the medulla oblongata and spinothalamic tract.", - "description": "Part of spinothalamic tract in the medulla", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110974", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002944#spinothalamic-tract-of-medulla-1", - "name": "spinothalamic tract of medulla", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002944", - "synonym": [ - "spinothalamic tract", - "spinothalamic tract of the medulla", - "tractus spinothalamicus (myelencephali)" - ] -} diff --git a/instances/UBERONParcellation/spinothalamicTractOfMidbrain.jsonld b/instances/UBERONParcellation/spinothalamicTractOfMidbrain.jsonld deleted file mode 100644 index 70bb8ba14..000000000 --- a/instances/UBERONParcellation/spinothalamicTractOfMidbrain.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinothalamicTractOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinothalamic tract of midbrain' is a tract of brain. It is part of the midbrain tegmentum and spinothalamic tract.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110975", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002609#spinothalamic-tract-of-midbrain-1", - "name": "spinothalamic tract of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002609", - "synonym": [ - "spinothalamic tract of the midbrain", - "stmb", - "tractus spinothalamicus (mesencephali)" - ] -} diff --git a/instances/UBERONParcellation/spinothalamicTractOfPons.jsonld b/instances/UBERONParcellation/spinothalamicTractOfPons.jsonld deleted file mode 100644 index 17addf3ad..000000000 --- a/instances/UBERONParcellation/spinothalamicTractOfPons.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spinothalamicTractOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Spinothalamic tract of pons' is a tract of brain. It is part of the pontine tegmentum and spinothalamic tract.", - "description": "Part of spinothalamic tract that is in the pontine tegmentum", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110976", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002798#spinothalamic-tract-of-pons-1", - "name": "spinothalamic tract of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002798", - "synonym": [ - "pons of varolius spinothalamic tract", - "pons of varolius spinothalamic tract of medulla", - "pons spinothalamic tract", - "pons spinothalamic tract of medulla", - "spinotectal pathway", - "spinothalamic tract of medulla of pons", - "spinothalamic tract of medulla of pons of varolius", - "spinothalamic tract of pons of varolius", - "spinothalamic tract of the pons", - "tractus spinothalamicus (pontis)" - ] -} diff --git a/instances/UBERONParcellation/spleniumOfTheCorpusCallosum.jsonld b/instances/UBERONParcellation/spleniumOfTheCorpusCallosum.jsonld deleted file mode 100644 index f5f42e256..000000000 --- a/instances/UBERONParcellation/spleniumOfTheCorpusCallosum.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/spleniumOfTheCorpusCallosum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "", - "description": "The 'splenium of the corpus callosum' is a white matter fibre bundle. It is represents the posterior end of the corpus callosum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724356", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015708#splenium-of-the-corpus-callosum", - "name": "splenium of the corpus callosum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015708", - "synonym": [ - "corpus callosum splenium", - "splenium", - "splenium corporis callosi", - "splenium corpus callosi", - "splenium of corpus callosum" - ] -} diff --git a/instances/UBERONParcellation/stratumZonaleOfThalamus.jsonld b/instances/UBERONParcellation/stratumZonaleOfThalamus.jsonld deleted file mode 100644 index faecbf0a5..000000000 --- a/instances/UBERONParcellation/stratumZonaleOfThalamus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/stratumZonaleOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Stratum zonale of thalamus' is a diencephalic white matter. It is part of the dorsal plus ventral thalamus.", - "description": "The thalamus consists chiefly of gray substance, but its upper surface is covered by a layer of white substance, named the stratum zonale.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111083", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002801#stratum-zonale-of-thalamus-1", - "name": "stratum zonale of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002801", - "synonym": [ - "neuraxis stratum", - "stratum zonale of the thalamus", - "stratum zonale thalami" - ] -} diff --git a/instances/UBERONParcellation/striaMedullaris.jsonld b/instances/UBERONParcellation/striaMedullaris.jsonld deleted file mode 100644 index 8b4900018..000000000 --- a/instances/UBERONParcellation/striaMedullaris.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striaMedullaris", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Stria medullaris' is a diencephalic white matter and stria of neuraxis. It is part of the dorsal plus ventral thalamus.", - "description": "White matter pathway located in the superior wall of the third ventricle along the dorsal-medial margin of the diencephalon; contains axons that interconnect the anterior hypothalamus and septal nuclei in the medial basal forebrain with the habenula, a component of the epithalamus. (http://www.sylvius.com/index/s/stria_medullaris.html)]]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111089", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006086#stria-medullaris-1", - "name": "stria medullaris", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006086", - "synonym": [ - "sm", - "stria habenularis", - "stria medularis", - "stria medullaris (Wenzel - Wenzel)", - "stria medullaris (Wenzel-Wenzel)", - "stria medullaris of thalamus", - "stria medullaris of the thalamus", - "stria medullaris thalami", - "stria medullaris thalamica" - ] -} diff --git a/instances/UBERONParcellation/striaTerminalis.jsonld b/instances/UBERONParcellation/striaTerminalis.jsonld deleted file mode 100644 index a55857097..000000000 --- a/instances/UBERONParcellation/striaTerminalis.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striaTerminalis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Stria terminalis' is a cerebral hemisphere white matter and stria of telencephalon.", - "description": "White matter structure in the brain consisting of fibers running along the lateral margin of the ventricular surface of the thalamus. The stria terminalis covers the thalamostriate vein, marking a line of separation between the thalamus and the caudate nucleus as seen upon gross dissection of the ventricles of the brain, viewed from the superior aspect. The stria terminalis extends from the region of the interventricular foramen to the temporal horn of the lateral ventricle, carrying fibers from the amygdala to the septal, hypothalamic, and thalamic areas of the brain. It also carries fibers projecting from these areas back to the amygdala. (http://en.wikipedia.org/wiki/Stria_terminalis)]]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111091", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003029#stria-terminalis-1", - "name": "stria terminalis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003029", - "synonym": [ - "fibrae striae terminalis", - "fovilles fasciculus", - "semicircular stria", - "st", - "stria semicircularis", - "stria terminalis", - "stria terminalis (Wenzel-Wenzel)", - "Tarins tenia", - "tenia semicircularis", - "terminal stria" - ] -} diff --git a/instances/UBERONParcellation/striatum.jsonld b/instances/UBERONParcellation/striatum.jsonld deleted file mode 100644 index 79db947a4..000000000 --- a/instances/UBERONParcellation/striatum.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Striatum' is a gray matter of telencephalon. It is part of the ventral part of telencephalon, corpus striatum and basal nuclear complex.", - "description": "* Externally Sourced Definition: A region of the brain consisting of the phylogenetically newer part of the Corpus_striatum (Caudate_nucleus and Putamen).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111098", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002435#striatum", - "name": "striatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002435", - "synonym": [ - "caudate putamen", - "corpus striatum", - "corpus striatum (Zilles)", - "dorsal striatum", - "neostriatum", - "neuraxis striatum", - "striate nucleus", - "striated nucleus", - "striatum", - "striatum of neuraxis" - ] -} diff --git a/instances/UBERONParcellation/striosomalPartOfBodyOfCaudateNucleus.jsonld b/instances/UBERONParcellation/striosomalPartOfBodyOfCaudateNucleus.jsonld deleted file mode 100644 index 4405c3e3e..000000000 --- a/instances/UBERONParcellation/striosomalPartOfBodyOfCaudateNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striosomalPartOfBodyOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Striosomal part of body of caudate nucleus' is a striosomal part of caudate nucleus. It is part of the body of caudate nucleus.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111106", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027244#striosomal-part-of-body-of-caudate-nucleus", - "name": "striosomal part of body of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027244", - "synonym": null -} diff --git a/instances/UBERONParcellation/striosomalPartOfCaudateNucleus.jsonld b/instances/UBERONParcellation/striosomalPartOfCaudateNucleus.jsonld deleted file mode 100644 index 065d67884..000000000 --- a/instances/UBERONParcellation/striosomalPartOfCaudateNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striosomalPartOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Striosomal part of caudate nucleus' is a striosome. It is part of the caudate nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111107", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0029004#striosomal-part-of-caudate-nucleus-1", - "name": "striosomal part of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0029004", - "synonym": [ - "striosomal compartment of caudate nucleus", - "striosomal part of caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/striosomalPartOfPutamen.jsonld b/instances/UBERONParcellation/striosomalPartOfPutamen.jsonld deleted file mode 100644 index eb839cd8b..000000000 --- a/instances/UBERONParcellation/striosomalPartOfPutamen.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/striosomalPartOfPutamen", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Striosomal part of putamen' is a striosome. It is part of the putamen.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111109", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0029005#striosomal-part-of-putamen-1", - "name": "striosomal part of putamen", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0029005", - "synonym": [ - "striosomal part of putamen" - ] -} diff --git a/instances/UBERONParcellation/subarachnoidFissure.jsonld b/instances/UBERONParcellation/subarachnoidFissure.jsonld deleted file mode 100644 index 4056910e7..000000000 --- a/instances/UBERONParcellation/subarachnoidFissure.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subarachnoidFissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subarachnoid fissure' is an anatomical entity. It is part of the subarachnoid space.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735254", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014466#subarachnoid-fissure", - "name": "subarachnoid fissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014466", - "synonym": null -} diff --git a/instances/UBERONParcellation/subarachnoidSpace.jsonld b/instances/UBERONParcellation/subarachnoidSpace.jsonld deleted file mode 100644 index 44a547a8b..000000000 --- a/instances/UBERONParcellation/subarachnoidSpace.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subarachnoidSpace", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subarachnoid space' is an anatomical entity. It is part of the brain.", - "description": "The space between the arachnoid and pia mater.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736673", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000315#subarachnoid-space", - "name": "subarachnoid space", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000315", - "synonym": null -} diff --git a/instances/UBERONParcellation/subarachnoidSulcus.jsonld b/instances/UBERONParcellation/subarachnoidSulcus.jsonld deleted file mode 100644 index 531d5d194..000000000 --- a/instances/UBERONParcellation/subarachnoidSulcus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subarachnoidSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subarachnoid sulcus' is a sulcus of brain. It is part of the subarachnoid space.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730861", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008334#subarachnoid-sulcus", - "name": "subarachnoid sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008334", - "synonym": null -} diff --git a/instances/UBERONParcellation/subbrachialNucleus.jsonld b/instances/UBERONParcellation/subbrachialNucleus.jsonld deleted file mode 100644 index 6eff98bc0..000000000 --- a/instances/UBERONParcellation/subbrachialNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subbrachialNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subbrachial nucleus' is a nucleus of midbrain tectum.", - "description": "A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111154", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006119#subbrachial-nucleus-1", - "name": "subbrachial nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006119", - "synonym": [ - "SubB", - "subbrachial nucleus", - "tegmental area of tsai" - ] -} diff --git a/instances/UBERONParcellation/subcallosalArea.jsonld b/instances/UBERONParcellation/subcallosalArea.jsonld deleted file mode 100644 index 4a2994cba..000000000 --- a/instances/UBERONParcellation/subcallosalArea.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subcallosalArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subcallosal area' is a gray matter of telencephalon.", - "description": "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111156", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003020#subcallosal-area-1", - "name": "subcallosal area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003020", - "synonym": [ - "adolfactory area", - "area paraolfactoria", - "area parolfactoria", - "area subcallosa", - "paraolfactory area", - "parolfactory area", - "subcallosal cortex", - "Zuckerkandl's gyrus" - ] -} diff --git a/instances/UBERONParcellation/subcommissuralOrgan.jsonld b/instances/UBERONParcellation/subcommissuralOrgan.jsonld deleted file mode 100644 index c733a2f6a..000000000 --- a/instances/UBERONParcellation/subcommissuralOrgan.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subcommissuralOrgan", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subcommissural organ' is a secretory circumventricular organ. It is part of the midbrain tectum and Reissner's fiber.", - "description": "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111159", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002139#subcommissural-organ-1", - "name": "subcommissural organ", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002139", - "synonym": [ - "cerebral aqueduct subcommissural organ", - "corpus subcommissurale", - "dorsal subcommissural organ", - "organum subcommissurale", - "SCO" - ] -} diff --git a/instances/UBERONParcellation/subcuneiformNucleus.jsonld b/instances/UBERONParcellation/subcuneiformNucleus.jsonld deleted file mode 100644 index ee55eba7b..000000000 --- a/instances/UBERONParcellation/subcuneiformNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subcuneiformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": null, - "description": "'Subcuneiform nucleus' is a nucleus of midbrain reticular formation.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111160", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002700#subcuneiform-nucleus-1", - "name": "subcuneiform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002700", - "synonym": null -} diff --git a/instances/UBERONParcellation/subfascicularNucleus.jsonld b/instances/UBERONParcellation/subfascicularNucleus.jsonld deleted file mode 100644 index eb6ff1f04..000000000 --- a/instances/UBERONParcellation/subfascicularNucleus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subfascicularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subfascicular nucleus' is a nucleus of dorsal thalamus. It is part of the midline nuclear group.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111163", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002959#subfascicular-nucleus-1", - "name": "subfascicular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002959", - "synonym": [ - "SF", - "nucleus subfascicularis" - ] -} diff --git a/instances/UBERONParcellation/subicularComplex.jsonld b/instances/UBERONParcellation/subicularComplex.jsonld deleted file mode 100644 index 6bead6f61..000000000 --- a/instances/UBERONParcellation/subicularComplex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subicularComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subicular complex' is a regional part of brain. It is part of the hippocampal formation.", - "description": "A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111167", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023787#subicular-complex-1", - "name": "subicular complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023787", - "synonym": [ - "subicular complex" - ] -} diff --git a/instances/UBERONParcellation/subiculum.jsonld b/instances/UBERONParcellation/subiculum.jsonld deleted file mode 100644 index e52e7f8bf..000000000 --- a/instances/UBERONParcellation/subiculum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/subiculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Subiculum' is a regional part of brain. It is part of the hippocampal formation.", - "description": "Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111168", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002191#subiculum-1", - "name": "subiculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002191", - "synonym": [ - "gyrus parahippocampalis", - "subicular cortex", - "subiculum cornu ammonis", - "subiculum hippocampi" - ] -} diff --git a/instances/UBERONParcellation/sublentiformNucleus.jsonld b/instances/UBERONParcellation/sublentiformNucleus.jsonld deleted file mode 100644 index fbb7ce142..000000000 --- a/instances/UBERONParcellation/sublentiformNucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/sublentiformNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Sublentiform nucleus' is a nucleus of midbrain tectum and pretectal nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111190", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002578#sublentiform-nucleus-1", - "name": "sublentiform nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002578", - "synonym": [ - "nucleus sublentiformis" - ] -} diff --git a/instances/UBERONParcellation/submedialNucleusOfThalamus.jsonld b/instances/UBERONParcellation/submedialNucleusOfThalamus.jsonld deleted file mode 100644 index 76f72d329..000000000 --- a/instances/UBERONParcellation/submedialNucleusOfThalamus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/submedialNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Submedial nucleus of thalamus' is a posterior nucleus of thalamus.", - "description": "Thalamic nucleus separated from the ventromedial part of the mediodorsal nucleus of the thalamus by the internal medullary lamina (Paxinos The rat nervous system 2nd ed, Academic Press, 1995).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111192", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003031#submedial-nucleus", - "name": "submedial nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003031", - "synonym": [ - "gelatinosus thalamic nucleus", - "nucleus submedialis thalami", - "nucleus submedius thalami", - "SM", - "submedial nucleus", - "submedial nucleus of thalamus", - "submedial nucleus of the thalamus", - "submedial nucleus thalamus", - "submedial thalamic nucleus", - "submedius thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/substantiaGelatinosa.jsonld b/instances/UBERONParcellation/substantiaGelatinosa.jsonld deleted file mode 100644 index 744b81e7b..000000000 --- a/instances/UBERONParcellation/substantiaGelatinosa.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaGelatinosa", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia gelatinosa' is a lamina of gray matter of spinal cord. It is part of the dorsal horn of spinal cord.", - "description": "Gray matter region of spinal cord gray matter that caps the posterior horn at all spinal levels.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111207", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002181#substantia-gelatinosa-of-spinal-cord-dorsal-horn", - "name": "substantia gelatinosa", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002181", - "synonym": [ - "central gelatinous substance of spinal cord", - "gelatinous substance of dorsal horn of spinal cord", - "gelatinous substance of posterior horn of spinal cord", - "gelatinous substance of Rolando", - "lamina II of gray matter of spinal cord", - "lamina spinalis II", - "Rexed lamina II", - "spinal lamina II", - "substantia gelatinosa cornu posterioris medullae spinalis", - "substantia gelatinosa of spinal cord dorsal horn", - "substantia gelatinosa of spinal cord posterior horn" - ] -} diff --git a/instances/UBERONParcellation/substantiaInnominata.jsonld b/instances/UBERONParcellation/substantiaInnominata.jsonld deleted file mode 100644 index ec01836b6..000000000 --- a/instances/UBERONParcellation/substantiaInnominata.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaInnominata", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia innominata' is a telencephalic nucleus. It is part of the ventral pallidum.", - "description": "A predominantly gray matter structure of the basal telencephalon defined on the basis of Nissl stain. Caudal to the anterior commissure it lies deep to the globus pallidus and dorsal to the amygdala. Rostral to the anterior commissure it lies deep to the striatum. The more rostral portion contains the basal forebrain nucleus ( Anthoney-1994 ). In the late twentieth century the region containing the substantia innominata was resegmented on the basis of neurochemistry and connectivity to constitute the striatopallidal system ( Heimer-1995 ). In this scheme the caudal portion of substantia innominata is located largely in the ventral pallidum and the rostral portion in the ventral striatum. (from Brain Info)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111212", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003017#substantia-innominata-1", - "name": "substantia innominata", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003017", - "synonym": [ - "innominate substance", - "nucleus of substantia innominata", - "Reichert)", - "SI", - "substantia innominata (Reil", - "substantia innominata of Meynert", - "substantia innominata of Reichert", - "substantia innominata of Reil", - "substriatal gray" - ] -} diff --git a/instances/UBERONParcellation/substantiaNigra.jsonld b/instances/UBERONParcellation/substantiaNigra.jsonld deleted file mode 100644 index af4438324..000000000 --- a/instances/UBERONParcellation/substantiaNigra.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaNigra", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia nigra' is a midbrain nucleus. It is part of the basal ganglion.", - "description": "Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111214", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002038#substantia-nigra-1", - "name": "substantia nigra", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002038", - "synonym": [ - "nucleus of basis pedunculi", - "nucleus pigmentosus subthalamo-peduncularis", - "SN", - "Soemmering's substance", - "substancia nigra", - "substantia nigra (Soemmerringi)" - ] -} diff --git a/instances/UBERONParcellation/substantiaNigraParsCompacta.jsonld b/instances/UBERONParcellation/substantiaNigraParsCompacta.jsonld deleted file mode 100644 index df9930407..000000000 --- a/instances/UBERONParcellation/substantiaNigraParsCompacta.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaNigraParsCompacta", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia nigra pars compacta' is part of the substantia nigra.", - "description": "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111219", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001965#substantia-nigra-pars-compacta-1", - "name": "substantia nigra pars compacta", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001965", - "synonym": [ - "compact division", - "compact part", - "compact part of substantia nigra", - "nucleus substantiae nigrae", - "pars compacta", - "pars compacta of substantia nigra", - "pars compacta substantiae nigrae", - "SNC", - "SNpc", - "substantia nigra", - "substantia nigra compact part", - "substantia nigra compacta" - ] -} diff --git a/instances/UBERONParcellation/substantiaNigraParsLateralis.jsonld b/instances/UBERONParcellation/substantiaNigraParsLateralis.jsonld deleted file mode 100644 index f90ce5ef5..000000000 --- a/instances/UBERONParcellation/substantiaNigraParsLateralis.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaNigraParsLateralis", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia nigra pars lateralis' is a regional part of brain. It is part of the substantia nigra.", - "description": "Part of the pars reticulata of substantia nigra. It is the lateral, 'most fibrous' part (Poirier-83), which is regarded to be the phylogenetically oldest part of the substantia nigra and the only part found in nonmammalian vertebrates (Crosby-62) (Adapted from Brain Info: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111221", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002995#substantia-nigra-pars-lateralis-1", - "name": "substantia nigra pars lateralis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002995", - "synonym": [ - "internal capsule (Burdach)", - "lateral division", - "lateral part", - "lateral part of substantia nigra", - "pars lateralis", - "pars lateralis substantiae nigrae", - "SNL", - "substantia nigra", - "substantia nigra lateral part" - ] -} diff --git a/instances/UBERONParcellation/substantiaNigraParsReticulata.jsonld b/instances/UBERONParcellation/substantiaNigraParsReticulata.jsonld deleted file mode 100644 index 8ed4a41f0..000000000 --- a/instances/UBERONParcellation/substantiaNigraParsReticulata.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/substantiaNigraParsReticulata", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Substantia nigra pars reticulata' is part of the substantia nigra.", - "description": "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111222", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001966#substantia-nigra-pars-reticulata-1", - "name": "substantia nigra pars reticulata", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001966", - "synonym": [ - "nucleus substantiae nigrae", - "pars compacta", - "pars compacta of substantia nigra", - "pars diffusa", - "pars reticularis", - "pars reticularis substantiae nigrae", - "pars reticulata", - "reticular division", - "reticular part", - "reticular part of substantia nigra", - "SNPR", - "SNR", - "substantia nigra", - "substantia nigra reticular part" - ] -} diff --git a/instances/UBERONParcellation/sulcusLimitansOfFourthVentricle.jsonld b/instances/UBERONParcellation/sulcusLimitansOfFourthVentricle.jsonld deleted file mode 100644 index 48f007d59..000000000 --- a/instances/UBERONParcellation/sulcusLimitansOfFourthVentricle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/sulcusLimitansOfFourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Sulcus limitans of fourth ventricle' is an anatomical entity. It is part of the fourth ventricle.", - "description": "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736901", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009573#sulcus-limitans-of-fourth-ventricle", - "name": "sulcus limitans of fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009573", - "synonym": null -} diff --git a/instances/UBERONParcellation/sulcusOfBrain.jsonld b/instances/UBERONParcellation/sulcusOfBrain.jsonld deleted file mode 100644 index 0df4b1c05..000000000 --- a/instances/UBERONParcellation/sulcusOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/sulcusOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Sulcus of brain' is an anatomical entity. It is part of the brain.", - "description": "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725590", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013118#sulcus-of-brain", - "name": "sulcus of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013118", - "synonym": null -} diff --git a/instances/UBERONParcellation/superficialFeaturePartOfOccipitalLobe.jsonld b/instances/UBERONParcellation/superficialFeaturePartOfOccipitalLobe.jsonld deleted file mode 100644 index 511a24e85..000000000 --- a/instances/UBERONParcellation/superficialFeaturePartOfOccipitalLobe.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superficialFeaturePartOfOccipitalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superficial feature part of occipital lobe' is a regional part of brain. It is part of the occipital lobe.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111268", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023462#superficial-feature-part-of-occipital-lobe-1", - "name": "superficial feature part of occipital lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023462", - "synonym": [ - "superficial feature part of occipital lobe" - ] -} diff --git a/instances/UBERONParcellation/superficialFeaturePartOfTheCerebellum.jsonld b/instances/UBERONParcellation/superficialFeaturePartOfTheCerebellum.jsonld deleted file mode 100644 index f10e69de4..000000000 --- a/instances/UBERONParcellation/superficialFeaturePartOfTheCerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superficialFeaturePartOfTheCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superficial feature part of the cerebellum' is a regional part of brain. It is part of the cerebellum.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111271", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024046#superficial-feature-part-of-the-cerebellum", - "name": "superficial feature part of the cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024046", - "synonym": null -} diff --git a/instances/UBERONParcellation/superiorCerebellarPeduncle.jsonld b/instances/UBERONParcellation/superiorCerebellarPeduncle.jsonld deleted file mode 100644 index 77ce1a03b..000000000 --- a/instances/UBERONParcellation/superiorCerebellarPeduncle.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorCerebellarPeduncle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior cerebellar peduncle' is a cerebellar peduncle.", - "description": "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111279", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002150#superior-cerebellar-peduncle-1", - "name": "superior cerebellar peduncle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002150", - "synonym": [ - "brachium conjunctivum", - "crus cerebello-cerebrale", - "pedunculus cerebellaris cranialis", - "pedunculus cerebellaris rostralis", - "pedunculus cerebellaris superior", - "scp", - "Stilling)", - "superior cerebelar peduncles", - "superior cerebellar peduncle (brachium conjuctivum)", - "superior cerebellar peduncle (brachium conjunctivum)", - "superior cerebellar peduncle (Galen", - "superior peduncle", - "tractus cerebello-rubralis", - "tractus cerebello-tegmentalis mesencephali" - ] -} diff --git a/instances/UBERONParcellation/superiorCerebellarPeduncleOfMidbrain.jsonld b/instances/UBERONParcellation/superiorCerebellarPeduncleOfMidbrain.jsonld deleted file mode 100644 index 3b99e4e2a..000000000 --- a/instances/UBERONParcellation/superiorCerebellarPeduncleOfMidbrain.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorCerebellarPeduncleOfMidbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior cerebellar peduncle of midbrain' is a regional part of brain. It is part of the midbrain tegmentum and superior cerebellar peduncle.", - "description": "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111280", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007707#superior-cerebellar-peduncle-of-midbrain-1", - "name": "superior cerebellar peduncle of midbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007707", - "synonym": [ - "pedunculus cerebellaris superior (mesencephalon)", - "scpmb", - "superior cerebellar peduncle of midbrain", - "superior cerebellar peduncle of the midbrain" - ] -} diff --git a/instances/UBERONParcellation/superiorCerebellarPeduncleOfPons.jsonld b/instances/UBERONParcellation/superiorCerebellarPeduncleOfPons.jsonld deleted file mode 100644 index c4007d452..000000000 --- a/instances/UBERONParcellation/superiorCerebellarPeduncleOfPons.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorCerebellarPeduncleOfPons", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior cerebellar peduncle of pons' is a regional part of brain. It is part of the superior cerebellar peduncle and pontine tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111281", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007709#superior-cerebellar-peduncle-of-pons-1", - "name": "superior cerebellar peduncle of pons", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007709", - "synonym": [ - "pedunculus cerebellaris superior (pontis)", - "scpp", - "superior cerebellar peduncle of pons", - "superior cerebellar peduncle of the pons" - ] -} diff --git a/instances/UBERONParcellation/superiorColliculus.jsonld b/instances/UBERONParcellation/superiorColliculus.jsonld deleted file mode 100644 index 14855b0cc..000000000 --- a/instances/UBERONParcellation/superiorColliculus.jsonld +++ /dev/null @@ -1,36 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorColliculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior colliculus' is a regional part of brain and visual processing part of nervous system. It is part of the corpora quadrigemina.", - "description": "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111282", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001945#superior-colliculus-1", - "name": "superior colliculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001945", - "synonym": [ - "anterior colliculus", - "anterior corpus quadrigeminum", - "colliculus bigeminalis oralis", - "colliculus cranialis", - "colliculus rostralis", - "colliculus superior", - "corpora bigemina", - "corpus quadrigeminum superius", - "cranial colliculus", - "dorsal midbrain", - "layers of the superior colliculus", - "lobus opticus", - "nates", - "optic lobe", - "optic tectum", - "SC", - "strata (grisea et alba) colliculi cranialis", - "strata (grisea et alba) colliculi superioris", - "tectal lobe", - "tectum", - "tectum opticum" - ] -} diff --git a/instances/UBERONParcellation/superiorFrontalGyrus.jsonld b/instances/UBERONParcellation/superiorFrontalGyrus.jsonld deleted file mode 100644 index 96e43b050..000000000 --- a/instances/UBERONParcellation/superiorFrontalGyrus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior frontal gyrus' is a frontal gyrus.", - "description": "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the \"inflated\" surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111304", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002661#superior-frontal-gyrus-1", - "name": "superior frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002661", - "synonym": [ - "gyrus F1", - "gyrus frontalis primus", - "gyrus frontalis superior", - "marginal gyrus", - "superior frontal convolution" - ] -} diff --git a/instances/UBERONParcellation/superiorMedullaryVelum.jsonld b/instances/UBERONParcellation/superiorMedullaryVelum.jsonld deleted file mode 100644 index e47b37ec4..000000000 --- a/instances/UBERONParcellation/superiorMedullaryVelum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorMedullaryVelum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior medullary velum' is a white matter of metencephalon. It is part of the cerebellum.", - "description": "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111306", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002659#superior-medullary-velum-1", - "name": "superior medullary velum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002659", - "synonym": [ - "anterior medullary velum", - "rostral medullary velum", - "SMV", - "velum medullare anterius", - "velum medullare craniale", - "velum medullare rostralis", - "velum medullare superior", - "velum medullare superius" - ] -} diff --git a/instances/UBERONParcellation/superiorOccipitalGyrus.jsonld b/instances/UBERONParcellation/superiorOccipitalGyrus.jsonld deleted file mode 100644 index 2208e1e4e..000000000 --- a/instances/UBERONParcellation/superiorOccipitalGyrus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorOccipitalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior occipital gyrus' is an occipital gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111308", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002948#superior-occipital-gyrus-1", - "name": "superior occipital gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002948", - "synonym": [ - "gyrus occipitalis primus", - "gyrus occipitalis superior" - ] -} diff --git a/instances/UBERONParcellation/superiorOlivaryComplex.jsonld b/instances/UBERONParcellation/superiorOlivaryComplex.jsonld deleted file mode 100644 index 563429264..000000000 --- a/instances/UBERONParcellation/superiorOlivaryComplex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorOlivaryComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the pontine tegmentum.", - "description": "A a collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111309", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002128#superior-olivary-complex-1", - "name": "superior olivary complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002128", - "synonym": [ - "nucleus olivaris superior", - "regio olivaris superioris", - "superior olivary nuclei", - "superior olivary nucleus", - "superior olivary nucleus (Barr & Kiernan)", - "superior olive" - ] -} diff --git a/instances/UBERONParcellation/superiorParietalCortex.jsonld b/instances/UBERONParcellation/superiorParietalCortex.jsonld deleted file mode 100644 index 9f902a8c1..000000000 --- a/instances/UBERONParcellation/superiorParietalCortex.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorParietalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior parietal cortex' is part of the parietal lobe and neocortex.", - "description": "Component of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111317", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006094#superior-parietal-cortex-1", - "name": "superior parietal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006094", - "synonym": [ - "gyrus parietalis superior", - "lobulus parietalis superior", - "superior parietal cortex", - "superior parietal gyrus", - "superior parietal lobule", - "superior portion of parietal gyrus" - ] -} diff --git a/instances/UBERONParcellation/superiorRostralGyrus.jsonld b/instances/UBERONParcellation/superiorRostralGyrus.jsonld deleted file mode 100644 index f4e3350c4..000000000 --- a/instances/UBERONParcellation/superiorRostralGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorRostralGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior rostral gyrus' is a regional part of brain. It is part of the rostral gyrus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111324", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019279#superior-rostral-gyrus-1", - "name": "superior rostral gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019279", - "synonym": [ - "superior rostral gyrus" - ] -} diff --git a/instances/UBERONParcellation/superiorSalivatoryNucleus.jsonld b/instances/UBERONParcellation/superiorSalivatoryNucleus.jsonld deleted file mode 100644 index b0a35b831..000000000 --- a/instances/UBERONParcellation/superiorSalivatoryNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorSalivatoryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior salivatory nucleus' is a cranial nerve nucleus, salivatory nucleus and nucleus of medulla oblongata. It is part of the pontine tegmentum.", - "description": "Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111326", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002149#superior-salivatory-nucleus-1", - "name": "superior salivatory nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002149", - "synonym": null -} diff --git a/instances/UBERONParcellation/superiorTemporalGyrus.jsonld b/instances/UBERONParcellation/superiorTemporalGyrus.jsonld deleted file mode 100644 index 09ef57911..000000000 --- a/instances/UBERONParcellation/superiorTemporalGyrus.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorTemporalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior temporal gyrus' is a gyrus. It is part of the temporal lobe.", - "description": "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111328", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002769#superior-temporal-gyrus-1", - "name": "superior temporal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002769", - "synonym": [ - "STG", - "gyrus temporalis superior" - ] -} diff --git a/instances/UBERONParcellation/superiorTemporalSulcus.jsonld b/instances/UBERONParcellation/superiorTemporalSulcus.jsonld deleted file mode 100644 index a4170be55..000000000 --- a/instances/UBERONParcellation/superiorTemporalSulcus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorTemporalSulcus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'superior temporal sulcus' is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. [from [wikipedia](http://en.wikipedia.org/wiki/Superior_temporal_sulcus)]", - "description": "The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion. [from [wikipedia](http://en.wikipedia.org/wiki/Superior_temporal_sulcus)]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111329", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002734#superior-temporal-sulcus-1", - "name": "superior temporal sulcus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002734", - "synonym": [ - "parallel sulcus", - "STS", - "sulcus t1", - "sulcus temporalis superior", - "superior temporal fissure" - ] -} diff --git a/instances/UBERONParcellation/superiorTransverseFrontopolarGyrus.jsonld b/instances/UBERONParcellation/superiorTransverseFrontopolarGyrus.jsonld deleted file mode 100644 index 9903c30cf..000000000 --- a/instances/UBERONParcellation/superiorTransverseFrontopolarGyrus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/superiorTransverseFrontopolarGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Superior transverse frontopolar gyrus' is a regional part of brain. It is part of the transverse frontopolar gyri complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111330", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024201#superior-transverse-frontopolar-gyrus-1", - "name": "superior transverse frontopolar gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024201", - "synonym": [ - "superior transverse frontopolar gyrus" - ] -} diff --git a/instances/UBERONParcellation/supracallosalGyrus.jsonld b/instances/UBERONParcellation/supracallosalGyrus.jsonld deleted file mode 100644 index e3237d632..000000000 --- a/instances/UBERONParcellation/supracallosalGyrus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/supracallosalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Supracallosal gyrus' is a gyrus. It is part of the limbic lobe.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111340", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002665#supracallosal-gyrus-1", - "name": "supracallosal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002665", - "synonym": [ - "gyrus supracallosus", - "hippocampus supracommissuralis", - "supracommissural hippocampal rudiment", - "supracommissural hippocampus" - ] -} diff --git a/instances/UBERONParcellation/suprachiasmaticNucleus.jsonld b/instances/UBERONParcellation/suprachiasmaticNucleus.jsonld deleted file mode 100644 index 0c8aa2974..000000000 --- a/instances/UBERONParcellation/suprachiasmaticNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/suprachiasmaticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Suprachiasmatic nucleus' is a hypothalamic nucleus and preoptic nucleus. It is part of the medial zone of hypothalamus.", - "description": "* An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111341", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002034#suprachiasmatic-nucleus-1", - "name": "suprachiasmatic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002034", - "synonym": [ - "nucleus suprachiasmaticus", - "nucleus suprachiasmaticus hypothalami", - "SCh", - "SCN", - "suprachiasmatic nucleus (Spiegel-Zwieg)", - "suprachiasmatic nucleus of hypothalamus" - ] -} diff --git a/instances/UBERONParcellation/suprachiasmaticNucleusDorsomedialPart.jsonld b/instances/UBERONParcellation/suprachiasmaticNucleusDorsomedialPart.jsonld deleted file mode 100644 index 55a2a805c..000000000 --- a/instances/UBERONParcellation/suprachiasmaticNucleusDorsomedialPart.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/suprachiasmaticNucleusDorsomedialPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Suprachiasmatic nucleus dorsomedial part' is a regional part of brain. It is part of the suprachiasmatic nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111342", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027768#suprachiasmatic-nucleus-dorsomedial-part-1", - "name": "suprachiasmatic nucleus dorsomedial part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027768", - "synonym": [ - "SCHd", - "suprachiasmatic nucleus dorsomedial part" - ] -} diff --git a/instances/UBERONParcellation/suprachiasmaticNucleusVentrolateralPart.jsonld b/instances/UBERONParcellation/suprachiasmaticNucleusVentrolateralPart.jsonld deleted file mode 100644 index 3ced88069..000000000 --- a/instances/UBERONParcellation/suprachiasmaticNucleusVentrolateralPart.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/suprachiasmaticNucleusVentrolateralPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Suprachiasmatic nucleus ventrolateral part' is a regional part of brain. It is part of the suprachiasmatic nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111345", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0027771#suprachiasmatic-nucleus-ventrolateral-part-1", - "name": "suprachiasmatic nucleus ventrolateral part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027771", - "synonym": [ - "SCHv", - "suprachiasmatic nucleus ventrolateral part" - ] -} diff --git a/instances/UBERONParcellation/suprageniculateNucleusOfThalamus.jsonld b/instances/UBERONParcellation/suprageniculateNucleusOfThalamus.jsonld deleted file mode 100644 index b31743c79..000000000 --- a/instances/UBERONParcellation/suprageniculateNucleusOfThalamus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/suprageniculateNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Suprageniculate nucleus of thalamus' is a nucleus of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111347", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003033#suprageniculate-nucleus", - "name": "suprageniculate nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003033", - "synonym": [ - "nucleus suprageniculatus", - "SG", - "suprageniculate nucleus", - "suprageniculate thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/supramammillaryNucleus.jsonld b/instances/UBERONParcellation/supramammillaryNucleus.jsonld deleted file mode 100644 index 50c17ecd3..000000000 --- a/instances/UBERONParcellation/supramammillaryNucleus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/supramammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Supramammillary nucleus' is a hypothalamic nucleus. It is part of the mammillary body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111351", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001940#supramammillary-nucleus-1", - "name": "supramammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001940", - "synonym": [ - "nuclei premamillaris", - "nucleus premamillaris hypothalami", - "premamillary nucleus", - "premammillary nuclei", - "SuM" - ] -} diff --git a/instances/UBERONParcellation/supramarginalGyrus.jsonld b/instances/UBERONParcellation/supramarginalGyrus.jsonld deleted file mode 100644 index eec4827a7..000000000 --- a/instances/UBERONParcellation/supramarginalGyrus.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/supramarginalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Supramarginal gyrus' is a gyrus. It is part of the parietal lobe.", - "description": "Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111355", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002688#supramarginal-gyrus-1", - "name": "supramarginal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002688", - "synonym": [ - "anterior part of inferior parietal lobule", - "BA40", - "Brodmann area 40", - "gyrus supramarginalis", - "inferior parietal lobule (krieg)" - ] -} diff --git a/instances/UBERONParcellation/supraopticNucleus.jsonld b/instances/UBERONParcellation/supraopticNucleus.jsonld deleted file mode 100644 index b0c124dfa..000000000 --- a/instances/UBERONParcellation/supraopticNucleus.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/supraopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Supraoptic nucleus' is a hypothalamic nucleus. It is part of the periventricular zone of hypothalamus and anterior hypothalamic region.", - "description": "Well defined nucleus containing large cells in the anterior hypothalamus located above the beginning of the optic tract on both sides of the brain. At its most anterior end, it is situated above and lateral to the optic chiasm.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111356", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001929#supraoptic-nucleus-1", - "name": "supraoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001929", - "synonym": [ - "general", - "nucleus supraopticus", - "nucleus supraopticus hypothalami", - "nucleus tangentialis (Riley)", - "proper", - "SO", - "Supra-optic nucleus", - "supraoptic nucleus", - "supraoptic nucleus of hypothalamus", - "supraoptic nucleus proper (Lenhossek)" - ] -} diff --git a/instances/UBERONParcellation/supraspinalNucleus.jsonld b/instances/UBERONParcellation/supraspinalNucleus.jsonld deleted file mode 100644 index b189735d6..000000000 --- a/instances/UBERONParcellation/supraspinalNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/supraspinalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Supraspinal nucleus' is a nucleus of medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111360", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002882#supraspinal-nucleus-1", - "name": "supraspinal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002882", - "synonym": [ - "SSp", - "nucleus substantiae grisea ventralis", - "nucleus substantiae griseae ventralis", - "nucleus supraspinalis" - ] -} diff --git a/instances/UBERONParcellation/taeniaTectumOfBrain.jsonld b/instances/UBERONParcellation/taeniaTectumOfBrain.jsonld deleted file mode 100644 index c388e5a44..000000000 --- a/instances/UBERONParcellation/taeniaTectumOfBrain.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/taeniaTectumOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Taenia tectum of brain' is a white matter of limbic lobe and stria of telencephalon. It is part of the olfactory bulb and supracallosal gyrus.", - "description": "A continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term 'tenia tecta' or 'taenia tecta' as a synonym for the lateral longitudinal stria ( Riley-1943 ).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111490", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015800#taenia-tectum-of-brain", - "name": "taenia tectum of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015800", - "synonym": [ - "taenia tecta", - "taenia tectum", - "tenia tecta", - "tenia tectum" - ] -} diff --git a/instances/UBERONParcellation/tailOfCaudateNucleus.jsonld b/instances/UBERONParcellation/tailOfCaudateNucleus.jsonld deleted file mode 100644 index 09ca41e5c..000000000 --- a/instances/UBERONParcellation/tailOfCaudateNucleus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tailOfCaudateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tail of caudate nucleus' is a gray matter of telencephalon. It is part of the caudate nucleus.", - "description": "Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111511", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002628#tail-of-caudate-nucleus-1", - "name": "tail of caudate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002628", - "synonym": [ - "cauda (caudatus)", - "cauda nuclei caudati", - "caudate nuclear tail", - "tail of the caudate nucleus" - ] -} diff --git a/instances/UBERONParcellation/tectobulbarTract.jsonld b/instances/UBERONParcellation/tectobulbarTract.jsonld deleted file mode 100644 index 146d54574..000000000 --- a/instances/UBERONParcellation/tectobulbarTract.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tectobulbarTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tectobulbar tract' is a tract of brain. It is part of the medulla oblongata.", - "description": "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111548", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002164#tectobulbar-tract-1", - "name": "tectobulbar tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002164", - "synonym": [ - "tecto-bulbar tract", - "tractus tectobulbaris" - ] -} diff --git a/instances/UBERONParcellation/tectopontineTract.jsonld b/instances/UBERONParcellation/tectopontineTract.jsonld deleted file mode 100644 index de19083e2..000000000 --- a/instances/UBERONParcellation/tectopontineTract.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tectopontineTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tectopontine tract' is a tract of brain. It is part of the pontine tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111549", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002930#tectopontine-tract-1", - "name": "tectopontine tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002930", - "synonym": [ - "fibrae tectopontinae", - "tectopontine fibers", - "tectopontine fibres", - "tractus tectopontinus" - ] -} diff --git a/instances/UBERONParcellation/telaChoroideaOfFourthVentricle.jsonld b/instances/UBERONParcellation/telaChoroideaOfFourthVentricle.jsonld deleted file mode 100644 index ac072353c..000000000 --- a/instances/UBERONParcellation/telaChoroideaOfFourthVentricle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/telaChoroideaOfFourthVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tela choroidea of fourth ventricle' is a tela choroidea. It is part of the fourth ventricle.", - "description": "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727490", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005287#tela-choroidea-of-fourth-ventricle", - "name": "tela choroidea of fourth ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005287", - "synonym": null -} diff --git a/instances/UBERONParcellation/telencephalicVentricle.jsonld b/instances/UBERONParcellation/telencephalicVentricle.jsonld deleted file mode 100644 index a29738493..000000000 --- a/instances/UBERONParcellation/telencephalicVentricle.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/telencephalicVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Telencephalic ventricle' is a brain ventricle. It is part of the telencephalon.", - "description": "Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106125", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002285#lateral-ventricle", - "name": "telencephalic ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002285", - "synonym": [ - "forebrain ventricle", - "lateral ventricle", - "lateral ventricle of brain", - "lateral ventricles", - "LV", - "tectal ventricle", - "telencephalic ventricle", - "telencephalic ventricles", - "telencephalic vesicle", - "telencephalon lateral ventricle" - ] -} diff --git a/instances/UBERONParcellation/telencephalon.jsonld b/instances/UBERONParcellation/telencephalon.jsonld deleted file mode 100644 index 1f50bf9c6..000000000 --- a/instances/UBERONParcellation/telencephalon.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/telencephalon", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Telencephalon' is a regional part of brain. It is part of the forebrain.", - "description": "The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the \"brain.\" It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111558", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001893#telencephalon-1", - "name": "telencephalon", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001893", - "synonym": [ - "cerebrum", - "endbrain", - "supratentorial region" - ] -} diff --git a/instances/UBERONParcellation/temporalCortex.jsonld b/instances/UBERONParcellation/temporalCortex.jsonld deleted file mode 100644 index 04b8a7926..000000000 --- a/instances/UBERONParcellation/temporalCortex.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporalCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Temporal cortex' is a cortex of cerebral lobe. It is part of the temporal lobe.", - "description": "Gray matter of the temporal region of the neocortex, located in the temporal lobe in gyrencephalic animals", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111586", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0016538#temporal-cortex", - "name": "temporal cortex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0016538", - "synonym": [ - "cortex of temporal lobe", - "gray matter of temporal lobe", - "temporal lobe cortex", - "temporal neocortex" - ] -} diff --git a/instances/UBERONParcellation/temporalCortexCingulum.jsonld b/instances/UBERONParcellation/temporalCortexCingulum.jsonld deleted file mode 100644 index 47d980fe6..000000000 --- a/instances/UBERONParcellation/temporalCortexCingulum.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporalCortexCingulum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The 'temporal cortex cingulum' is a white matter fibre bundle. It is part of cingulum of brain.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727013", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022429#temporal-cortex-cingulum", - "name": "temporal cortex cingulum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022429", - "synonym": [ - "cb-tx", - "cingulum (temporal gyrus)", - "cingulum bundle in temporal cortex", - "cingulum bundle in temporal gyrus" - ] -} diff --git a/instances/UBERONParcellation/temporalLobe.jsonld b/instances/UBERONParcellation/temporalLobe.jsonld deleted file mode 100644 index df7928031..000000000 --- a/instances/UBERONParcellation/temporalLobe.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporalLobe", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "Lower lateral part of the cerebral hemisphere. (MSH).", - "description": "'Temporal lobe' is a lobe of cerebral hemisphere.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111590", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001871#temporal-lobe-1", - "name": "temporal lobe", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001871", - "synonym": null -} diff --git a/instances/UBERONParcellation/temporalOperculum.jsonld b/instances/UBERONParcellation/temporalOperculum.jsonld deleted file mode 100644 index 0bec1f39f..000000000 --- a/instances/UBERONParcellation/temporalOperculum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporalOperculum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Temporal operculum' is a regional part of brain. It is part of the operculum of brain.", - "description": "Part of temporal lobe overlaying the insular cortex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111592", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002560#temporal-operculum-1", - "name": "temporal operculum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002560", - "synonym": [ - "facies supratemporalis", - "operculum temporale" - ] -} diff --git a/instances/UBERONParcellation/temporalPole.jsonld b/instances/UBERONParcellation/temporalPole.jsonld deleted file mode 100644 index 3217bf972..000000000 --- a/instances/UBERONParcellation/temporalPole.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporalPole", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Temporal pole' is a pole of cerebral hemisphere. It is part of the temporal lobe.", - "description": "Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111595", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002576#temporal-pole-1", - "name": "temporal pole", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002576", - "synonym": [ - "cerebral cortex", - "polus temporalis", - "temporal pole", - "temporopolar cortex" - ] -} diff --git a/instances/UBERONParcellation/temporoparietalJunction.jsonld b/instances/UBERONParcellation/temporoparietalJunction.jsonld deleted file mode 100644 index b238b3000..000000000 --- a/instances/UBERONParcellation/temporoparietalJunction.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/temporoparietalJunction", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Temporoparietal junction' is a regional part of brain. It is part of the cerebral cortex.", - "description": "An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111603", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0023852#temporoparietal-junction-1", - "name": "temporoparietal junction", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0023852", - "synonym": [ - "TPJ", - "temporoparietal junction" - ] -} diff --git a/instances/UBERONParcellation/thalamicComplex.jsonld b/instances/UBERONParcellation/thalamicComplex.jsonld deleted file mode 100644 index 1ed724638..000000000 --- a/instances/UBERONParcellation/thalamicComplex.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/thalamicComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'thalamic complex' is a nuclear complex. It is part of the 'gray matter of diencephalon'.", - "description": "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus [WP,modified]. [http://en.wikipedia.org/wiki/Thalamus#Thalamic_nuclei]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734352", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010225#thalamic-complex", - "name": "thalamic complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010225", - "synonym": null -} diff --git a/instances/UBERONParcellation/thalamicFiberTract.jsonld b/instances/UBERONParcellation/thalamicFiberTract.jsonld deleted file mode 100644 index 5b7d6b16f..000000000 --- a/instances/UBERONParcellation/thalamicFiberTract.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/thalamicFiberTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Thalamic fiber tract' is a tract of diencephalon. It is part of the dorsal plus ventral thalamus.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730765", - "knowledgeSpaceLink": null, - "name": "thalamic fiber tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025261", - "synonym": null -} diff --git a/instances/UBERONParcellation/thalamicReticularNucleus.jsonld b/instances/UBERONParcellation/thalamicReticularNucleus.jsonld deleted file mode 100644 index c5c7e943f..000000000 --- a/instances/UBERONParcellation/thalamicReticularNucleus.jsonld +++ /dev/null @@ -1,30 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/thalamicReticularNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted].", - "description": "'Thalamic reticular nucleus' is a nucleus of ventral thalamus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111656", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001903#thalamic-reticular-nucleus-1", - "name": "thalamic reticular nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001903", - "synonym": [ - "nuclei reticulares (thalami)", - "nucleus reticularis", - "nucleus reticularis thalami", - "nucleus reticulatus (thalami)", - "nucleus thalamicus reticularis", - "reticular nuclear group", - "reticular nucleus", - "reticular nucleus of thalamus", - "reticular nucleus of the thalamus", - "reticular nucleus thalamus (Arnold)", - "reticular nucleus-2", - "reticular thalamic nucleus", - "reticular thalamus nucleus", - "reticulatum thalami (Hassler)", - "Rt" - ] -} diff --git a/instances/UBERONParcellation/thirdVentricle.jsonld b/instances/UBERONParcellation/thirdVentricle.jsonld deleted file mode 100644 index 9c228e3aa..000000000 --- a/instances/UBERONParcellation/thirdVentricle.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/thirdVentricle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Third ventricle' is a brain ventricle. It is part of the diencephalon.", - "description": "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone. It is bounded anteriorly by the lamina terminalis; much of the medial surface is formed by the thalamus and hypothalamus; part of the hypothalamus forms its floor (Nolte, the Human Brain, 6th ed., 2009, pg 101).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111707", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002286#third-ventricle-1", - "name": "third ventricle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002286", - "synonym": [ - "3rd ventricle", - "3V", - "diencephalic ventricle", - "diencephalic vesicle", - "ventriculus diencephali", - "ventriculus tertius cerebri" - ] -} diff --git a/instances/UBERONParcellation/tractOfBrain.jsonld b/instances/UBERONParcellation/tractOfBrain.jsonld deleted file mode 100644 index b5b9ba951..000000000 --- a/instances/UBERONParcellation/tractOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tractOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tract of brain' is an axon tract. It is part of the brain and white matter.", - "description": "An axon tract that is part of a brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736079", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007702#tract-of-brain", - "name": "tract of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007702", - "synonym": null -} diff --git a/instances/UBERONParcellation/transverseFrontopolarGyriComplex.jsonld b/instances/UBERONParcellation/transverseFrontopolarGyriComplex.jsonld deleted file mode 100644 index d03c9c3d2..000000000 --- a/instances/UBERONParcellation/transverseFrontopolarGyriComplex.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/transverseFrontopolarGyriComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Transverse frontopolar gyri complex' is a regional part of brain. It is part of the frontal lobe.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111902", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022730#transverse-frontopolar-gyri-complex", - "name": "transverse frontopolar gyri complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022730", - "synonym": [ - "transverse frontopolar gyri", - "transverse frontopolar gyri complex" - ] -} diff --git a/instances/UBERONParcellation/transverseGyrusOfHeschl.jsonld b/instances/UBERONParcellation/transverseGyrusOfHeschl.jsonld deleted file mode 100644 index 348f9bb7c..000000000 --- a/instances/UBERONParcellation/transverseGyrusOfHeschl.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/transverseGyrusOfHeschl", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Transverse gyrus of Heschl' is a gyrus. It is part of the auditory cortex.", - "description": "Component of the temporal lobe, lateral aspect. The rostral boundary is the first appearance of the transverse temporal sulcus whereas the caudal boundary is the last slice where the transverse temporal cortex could be identified before its merger into the insular cortex. The lateral fissure and the superior temporal gyrus are the medial and lateral boundaries respectively (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111910", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003939#transverse-temporal-cortex", - "name": "transverse gyrus of Heschl", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003939", - "synonym": [ - "gyri temporales transversi", - "Heschl gyrus", - "Heschl's gyrus", - "Heshl's gyrus", - "transverse temporal cortex", - "transverse temporal gyri", - "transverse temporal gyrus" - ] -} diff --git a/instances/UBERONParcellation/transversePontineFibers.jsonld b/instances/UBERONParcellation/transversePontineFibers.jsonld deleted file mode 100644 index e8eeea99c..000000000 --- a/instances/UBERONParcellation/transversePontineFibers.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/transversePontineFibers", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Transverse pontine fibers' is a tract of brain. It is part of the basal part of pons.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111909", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002735#transverse-pontine-fibers-1", - "name": "transverse pontine fibers", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002735", - "synonym": [ - "fibrae pontis superficiales", - "fibrae pontis transversae", - "fibrae transversae superficiales pontis", - "superficial transverse fibers of pons", - "transverse fibers of pons", - "transverse fibers of the pons", - "transverse pontine fibers", - "transverse pontine fibres", - "transverse pontine tract" - ] -} diff --git a/instances/UBERONParcellation/trapezoidBody.jsonld b/instances/UBERONParcellation/trapezoidBody.jsonld deleted file mode 100644 index 2c72a098f..000000000 --- a/instances/UBERONParcellation/trapezoidBody.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/trapezoidBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Trapezoid body' is a white matter of pontine tegmentum.", - "description": "Bundles of axons traversing the pontine tegmentum oriented in the mediolateral direction. These fibers are related to the auditory pathway. Nuclei are embedded within these fibers.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111914", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002932#trapezoid-body-1", - "name": "trapezoid body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002932", - "synonym": [ - "corpus trapezoides", - "corpus trapezoideum", - "trapezoid body (Treviranus)", - "tz" - ] -} diff --git a/instances/UBERONParcellation/triangularPartOfInferiorFrontalGyrus.jsonld b/instances/UBERONParcellation/triangularPartOfInferiorFrontalGyrus.jsonld deleted file mode 100644 index e5f777ac2..000000000 --- a/instances/UBERONParcellation/triangularPartOfInferiorFrontalGyrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/triangularPartOfInferiorFrontalGyrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Triangular part of inferior frontal gyrus' is part of the inferior frontal gyrus.", - "description": "Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111954", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002629#triangular-part-of-inferior-frontal-gyrus-1", - "name": "triangular part of inferior frontal gyrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002629", - "synonym": [ - "gyrus frontalis inferior", - "inferior frontal gyrus", - "pars triangularis", - "pars triangularis gyri frontalis inferioris", - "pars triangularis of frontal operculum (Ono)", - "triangular part" - ] -} diff --git a/instances/UBERONParcellation/triangularSeptalNucleus.jsonld b/instances/UBERONParcellation/triangularSeptalNucleus.jsonld deleted file mode 100644 index e1768a44f..000000000 --- a/instances/UBERONParcellation/triangularSeptalNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/triangularSeptalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Triangular septal nucleus' is a telencephalic nucleus. It is part of the septal nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111955", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002977#triangular-septal-nucleus-1", - "name": "triangular septal nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002977", - "synonym": [ - "nucleus septalis triangularis", - "nucleus triangularis septi", - "triangular nucleus of septum", - "triangular nucleus of the septum", - "triangular nucleus septum (Cajal)", - "TS" - ] -} diff --git a/instances/UBERONParcellation/trigeminalNerveFibers.jsonld b/instances/UBERONParcellation/trigeminalNerveFibers.jsonld deleted file mode 100644 index 3d7aacb79..000000000 --- a/instances/UBERONParcellation/trigeminalNerveFibers.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/trigeminalNerveFibers", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A nerve fiber that is part of a trigeminal nerve.", - "description": "'Trigeminal nerve fibers' is a nerve fiber. It is part of the trigeminal nerve.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111965", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003041#trigeminal-nerve-fibers-1", - "name": "trigeminal nerve fibers", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003041", - "synonym": [ - "central part of trigeminal nerve", - "fibrae nervi trigemini", - "trigeminal nerve fibers", - "trigeminal nerve tract" - ] -} diff --git a/instances/UBERONParcellation/trigeminalNerveRoot.jsonld b/instances/UBERONParcellation/trigeminalNerveRoot.jsonld deleted file mode 100644 index e76bce1cb..000000000 --- a/instances/UBERONParcellation/trigeminalNerveRoot.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/trigeminalNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Trigeminal nerve root' is a root of cranial nerve. It is part of the metencephalon.", - "description": "A nerve root that extends_fibers_into a trigeminal nerve.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111966", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004673#trigeminal-nerve-root-1", - "name": "trigeminal nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004673", - "synonym": null -} diff --git a/instances/UBERONParcellation/trochlearNucleus.jsonld b/instances/UBERONParcellation/trochlearNucleus.jsonld deleted file mode 100644 index a9f83adc6..000000000 --- a/instances/UBERONParcellation/trochlearNucleus.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/trochlearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Trochlear nucleus' is a cranial nerve nucleus, brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "Nucleus in the midbrain at the level of the inferior colliculus near the midline, containing the motor neurons giving rise to the trochlear nerve, innervating the contralateral superior oblique extraocular muscle of the eye (Brodal, Neurological Anatomy, 3rd ed, 1981, pg. 533).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112004", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002722#trochlear-nucleus-1", - "name": "trochlear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002722", - "synonym": null -} diff --git a/instances/UBERONParcellation/tuberCinereum.jsonld b/instances/UBERONParcellation/tuberCinereum.jsonld deleted file mode 100644 index a464a3500..000000000 --- a/instances/UBERONParcellation/tuberCinereum.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tuberCinereum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tuber cinereum' is a regional part of brain. It is part of the medial zone of hypothalamus and intermediate hypothalamic region.", - "description": "Layer of gray matter in the hypothalamus that also forms part of the floor of the third ventricle and merges anteriorly into the infundibulum. (MSH)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112046", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002620#tuber-cinereum-1", - "name": "tuber cinereum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002620", - "synonym": [ - "hypothalamus", - "tbcn", - "tuber cinereum area", - "tuberal area", - "tuberal area of hypothalamus", - "tuberal nucleus", - "tuberal region", - "tubercle of Rolando" - ] -} diff --git a/instances/UBERONParcellation/tuberalSupraopticNucleus.jsonld b/instances/UBERONParcellation/tuberalSupraopticNucleus.jsonld deleted file mode 100644 index ba16190ed..000000000 --- a/instances/UBERONParcellation/tuberalSupraopticNucleus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tuberalSupraopticNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tuberal supraoptic nucleus' is a hypothalamic nucleus. It is part of the supraoptic nucleus.", - "description": "Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112049", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024079#tuberal-supraoptic-nucleus-1", - "name": "tuberal supraoptic nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024079", - "synonym": [ - "SONt", - "retrochiasmatic subdivision", - "tuberal supraoptic nucleus" - ] -} diff --git a/instances/UBERONParcellation/tuberomammillaryNucleus.jsonld b/instances/UBERONParcellation/tuberomammillaryNucleus.jsonld deleted file mode 100644 index 0c07c2b86..000000000 --- a/instances/UBERONParcellation/tuberomammillaryNucleus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tuberomammillaryNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tuberomammillary nucleus' is a hypothalamic nucleus. It is part of the mammillary body and lateral hypothalamic area.", - "description": "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112051", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001936#tuberomammillary-nucleus-1", - "name": "tuberomammillary nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001936", - "synonym": [ - "caudal magnocellular nucleus", - "mammilloinfundibular nucleus", - "mammiloinfundibular nucleus", - "nucleus tuberomamillaris", - "nucleus tuberomamillaris hypothalami", - "TM", - "tubero-mamillary area", - "tuberomamillary nucleus", - "tuberomammillary hypothalamic nucleus", - "tuberomammillary nucleus", - "ventral part", - "ventral tuberomammillary nucleus" - ] -} diff --git a/instances/UBERONParcellation/tuberomammillaryNucleusDorsalPart.jsonld b/instances/UBERONParcellation/tuberomammillaryNucleusDorsalPart.jsonld deleted file mode 100644 index 555b294da..000000000 --- a/instances/UBERONParcellation/tuberomammillaryNucleusDorsalPart.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tuberomammillaryNucleusDorsalPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tuberomammillary nucleus dorsal part' is a regional part of brain. It is part of the tuberomammillary nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112052", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014593#tuberomammillary-nucleus-dorsal-part-1", - "name": "tuberomammillary nucleus dorsal part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014593", - "synonym": [ - "dorsal part", - "TMd", - "tuberomammillary nucleus", - "tuberomammillary nucleus dorsal part" - ] -} diff --git a/instances/UBERONParcellation/tuberomammillaryNucleusVentralPart.jsonld b/instances/UBERONParcellation/tuberomammillaryNucleusVentralPart.jsonld deleted file mode 100644 index 2f4410b26..000000000 --- a/instances/UBERONParcellation/tuberomammillaryNucleusVentralPart.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/tuberomammillaryNucleusVentralPart", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Tuberomammillary nucleus ventral part' is a regional part of brain. It is part of the tuberomammillary nucleus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112057", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014594#tuberomammillary-nucleus-ventral-part-1", - "name": "tuberomammillary nucleus ventral part", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014594", - "synonym": [ - "TMv", - "tuberomammillary nucleus ventral part" - ] -} diff --git a/instances/UBERONParcellation/uncinateFasciculus.jsonld b/instances/UBERONParcellation/uncinateFasciculus.jsonld deleted file mode 100644 index afc88806d..000000000 --- a/instances/UBERONParcellation/uncinateFasciculus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/uncinateFasciculus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Uncinate fasciculus' is a fasciculus of brain. It is part of the pontine tegmentum.", - "description": "Pathway arising from the fastigial nucleus to the vestibular nuclei, reticular formation, motor neurons of brainstem and cervical spinal cord (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 261).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112157", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003044#uncinate-fasciculus-1", - "name": "uncinate fasciculus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003044", - "synonym": [ - "cerebellospinal tract", - "cerebral uncinate fasciculus", - "fasciculus fastigio-vestibularis", - "fastigiobulbar tract", - "hook bundle of Russell", - "russell's fasciculus", - "tractus cerebello-bulbaris", - "tractus uncinatus", - "tractus uncinatus (Lewandowsky)", - "unc", - "uncinate bundle of Russell", - "uncinate fascicle (Russell)", - "uncinate fasciculus of cerebellum", - "uncinate fasciculus of pons", - "uncinate fasciculus of Russell", - "uncinate fasciculus of the pons", - "uncinate fasciculus-2" - ] -} diff --git a/instances/UBERONParcellation/uncinateFasciculusOfTheForebrain.jsonld b/instances/UBERONParcellation/uncinateFasciculusOfTheForebrain.jsonld deleted file mode 100644 index 4702130df..000000000 --- a/instances/UBERONParcellation/uncinateFasciculusOfTheForebrain.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/uncinateFasciculusOfTheForebrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Uncinate fasciculus of the forebrain' is a regional part of brain. It is part of the white matter of telencephalon.", - "description": "A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112158", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019275#uncinate-fasciculus-of-the-forebrain", - "name": "uncinate fasciculus of the forebrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019275", - "synonym": [ - "uncinate fasciculus of cerebral hemisphere", - "uncinate fasiculus" - ] -} diff --git a/instances/UBERONParcellation/upperRhombicLip.jsonld b/instances/UBERONParcellation/upperRhombicLip.jsonld deleted file mode 100644 index 3d484f9c1..000000000 --- a/instances/UBERONParcellation/upperRhombicLip.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/upperRhombicLip", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Upper rhombic lip' is a regional part of brain. It is part of the rhombomere 1 and rhombic lip.", - "description": "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732955", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009841#upper-rhombic-lip", - "name": "upper rhombic lip", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009841", - "synonym": null -} diff --git a/instances/UBERONParcellation/vagalNerveFiberBundle.jsonld b/instances/UBERONParcellation/vagalNerveFiberBundle.jsonld deleted file mode 100644 index 2c6a34afa..000000000 --- a/instances/UBERONParcellation/vagalNerveFiberBundle.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vagalNerveFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vagal nerve fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112236", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006116#vagal-nerve-fiber-bundle-1", - "name": "vagal nerve fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006116", - "synonym": [ - "central part of vagus nerve", - "fibrae nervi vagi", - "tenth cranial nerve fibers", - "vagal nerve fiber bundle", - "vagal nerve fibers", - "vagal nerve tract" - ] -} diff --git a/instances/UBERONParcellation/valvulaCerebelli.jsonld b/instances/UBERONParcellation/valvulaCerebelli.jsonld deleted file mode 100644 index 6c2fd91e3..000000000 --- a/instances/UBERONParcellation/valvulaCerebelli.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/valvulaCerebelli", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Valvula cerebelli' is a regional part of brain. It is part of the cerebellum.", - "description": "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0730935", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000603#valvula-cerebelli", - "name": "valvula cerebelli", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000603", - "synonym": null -} diff --git a/instances/UBERONParcellation/vasculatureOfBrain.jsonld b/instances/UBERONParcellation/vasculatureOfBrain.jsonld deleted file mode 100644 index 74c3281da..000000000 --- a/instances/UBERONParcellation/vasculatureOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vasculatureOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vasculature of brain' is a vasculature of central nervous system. It is part of the brain.", - "description": "System pertaining to blood vessels in the brain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0735625", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008998#vasculature-of-brain", - "name": "vasculature of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008998", - "synonym": null -} diff --git a/instances/UBERONParcellation/venousSystemOfBrain.jsonld b/instances/UBERONParcellation/venousSystemOfBrain.jsonld deleted file mode 100644 index 116efb686..000000000 --- a/instances/UBERONParcellation/venousSystemOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/venousSystemOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Venous system of brain' is part of the brain.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733246", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013146#venous-system-of-brain", - "name": "venous system of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013146", - "synonym": null -} diff --git a/instances/UBERONParcellation/ventralAcousticStria.jsonld b/instances/UBERONParcellation/ventralAcousticStria.jsonld deleted file mode 100644 index 3c228a615..000000000 --- a/instances/UBERONParcellation/ventralAcousticStria.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralAcousticStria", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.", - "description": "White matter structure containing fibers arising from neurons in the cochlear nuclear complex", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112282", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003046#ventral-acoustic-stria-1", - "name": "ventral acoustic stria", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003046", - "synonym": [ - "VAS", - "anterior acoustic stria", - "stria cochlearis anterior", - "striae acusticae ventralis" - ] -} diff --git a/instances/UBERONParcellation/ventralAmygdalofugalProjection.jsonld b/instances/UBERONParcellation/ventralAmygdalofugalProjection.jsonld deleted file mode 100644 index 27e935b2f..000000000 --- a/instances/UBERONParcellation/ventralAmygdalofugalProjection.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralAmygdalofugalProjection", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral amygdalofugal projection' is a tract of brain. It is part of the cerebral hemisphere white matter.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112283", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002745#ventral-amygdalofugal-projection-1", - "name": "ventral amygdalofugal projection", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002745", - "synonym": [ - "projectiones ventrales amygdalae", - "tractus amygdalofugalis ventralis", - "vaf", - "ventral amygdalofugal pathway" - ] -} diff --git a/instances/UBERONParcellation/ventralAnteriorNucleusOfThalamus.jsonld b/instances/UBERONParcellation/ventralAnteriorNucleusOfThalamus.jsonld deleted file mode 100644 index fa79c03f2..000000000 --- a/instances/UBERONParcellation/ventralAnteriorNucleusOfThalamus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralAnteriorNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral anterior nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the ventral nuclear group.", - "description": "The ventral anterior nucleus is a nucleus of the thalamus.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112284", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002637#ventral-anterior-nucleus", - "name": "ventral anterior nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002637", - "synonym": [ - "nucleus lateropolaris", - "nucleus ventralis anterior", - "nucleus ventralis anterior thalami", - "nucleus ventralis thalami anterior", - "VA", - "ventral anterior nucleus", - "ventral anterior nucleus of thalamus", - "ventral anterior nucleus of the thalamus", - "ventral anterior thalamic nucleus", - "ventroanterior nucleus of the thalamus", - "ventroanterior thalamic nucleus" - ] -} diff --git a/instances/UBERONParcellation/ventralCochlearNucleus.jsonld b/instances/UBERONParcellation/ventralCochlearNucleus.jsonld deleted file mode 100644 index 3f435a483..000000000 --- a/instances/UBERONParcellation/ventralCochlearNucleus.jsonld +++ /dev/null @@ -1,26 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralCochlearNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral cochlear nucleus' is a cochlear nucleus.", - "description": "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112297", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002828#ventral-cochlear-nucleus-1", - "name": "ventral cochlear nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002828", - "synonym": [ - "accessory cochlear nucleus", - "anterior cochlear nucleus", - "c1281209", - "nucleus acustici accessorici", - "nucleus cochlearis anterior", - "nucleus cochlearis ventralis", - "VCo", - "ventral cochlear nuclei", - "ventral cochlear nucleus", - "ventral coclear nucleus", - "ventral division of cochlear nucleus" - ] -} diff --git a/instances/UBERONParcellation/ventralExternalArcuateFiberBundle.jsonld b/instances/UBERONParcellation/ventralExternalArcuateFiberBundle.jsonld deleted file mode 100644 index 864bb78fb..000000000 --- a/instances/UBERONParcellation/ventralExternalArcuateFiberBundle.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralExternalArcuateFiberBundle", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral external arcuate fiber bundle' is a neuron projection bundle and central nervous system cell part cluster. It is part of the medulla oblongata.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112301", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006097#ventral-external-arcuate-fiber-bundle-1", - "name": "ventral external arcuate fiber bundle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006097", - "synonym": [ - "fibrae arcuatae externae anteriores", - "fibrae arcuatae externae ventrales", - "fibrae circumpyramidales", - "fibre arcuatae superficiales", - "ventral external arcuate fiber bundle", - "ventral external arcuate fibers", - "ventral external arcuate tract" - ] -} diff --git a/instances/UBERONParcellation/ventralLateralGeniculateNucleus.jsonld b/instances/UBERONParcellation/ventralLateralGeniculateNucleus.jsonld deleted file mode 100644 index 30509d79e..000000000 --- a/instances/UBERONParcellation/ventralLateralGeniculateNucleus.jsonld +++ /dev/null @@ -1,41 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralLateralGeniculateNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral lateral geniculate nucleus' is a nucleus of dorsal thalamus. It is part of the lateral geniculate body.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112321", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002480#ventral-nucleus-of-lateral-geniculate-body", - "name": "ventral lateral geniculate nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002480", - "synonym": [ - "corpus geniculatum externum", - "corpus geniculatum laterale", - "DLG", - "dorsal_nucleus_of_lateral_geniculate_body", - "griseum praegeniculatum", - "lateral geniculate complex", - "lateral geniculate nucleus", - "lateral geniculate nucleus ventral part", - "nucleus accessorius", - "nucleus corporis geniculati lateralis", - "nucleus geniculatus lateralis pars ventralis", - "nucleus praegeniculatus", - "nucleus pregeniculatum", - "nucleus pregeniculatus", - "nucleus ventralis corporis geniculati lateralis", - "pars oralis", - "pars ventralis", - "praegeniculatum", - "pregeniculate nucleus", - "ventral lateral geniculate nucleus", - "ventral nucleus of lateral geniculate body", - "ventral part", - "ventral part (Kolliker)", - "ventral part (kolliker)", - "ventral part (Kvlliker)", - "ventral part of the lateral geniculate complex" - ] -} diff --git a/instances/UBERONParcellation/ventralLateralNucleusOfThalamus.jsonld b/instances/UBERONParcellation/ventralLateralNucleusOfThalamus.jsonld deleted file mode 100644 index be066bd47..000000000 --- a/instances/UBERONParcellation/ventralLateralNucleusOfThalamus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralLateralNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral lateral nucleus of thalamus' is a nucleus of dorsal thalamus and nucleus of ventral thalamus. It is part of the ventral nuclear group.", - "description": "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112309", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001925#ventral-lateral-nucleus", - "name": "ventral lateral nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001925", - "synonym": [ - "lateral ventral nucleus of thalamus", - "lateral-ventral nuclei of thalamus", - "nuclei ventrales laterales thalami", - "nucleus ventralis intermedius", - "nucleus ventralis lateralis", - "nucleus ventralis lateralis thalami", - "nucleus ventralis thalami lateralis", - "nucleus ventrolateralis thalami", - "ventral lateral complex of thalamus", - "ventral lateral nuclei of thalamus", - "ventral lateral nucleus", - "ventral lateral nucleus of thalamus", - "ventral lateral thalamic nuclei", - "ventral lateral thalamic nucleus", - "ventrolateral complex", - "ventrolateral thalamic nucleus", - "VL" - ] -} diff --git a/instances/UBERONParcellation/ventralNuclearGroup.jsonld b/instances/UBERONParcellation/ventralNuclearGroup.jsonld deleted file mode 100644 index 2c8c64b20..000000000 --- a/instances/UBERONParcellation/ventralNuclearGroup.jsonld +++ /dev/null @@ -1,28 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralNuclearGroup", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral nuclear group' is a nucleus of dorsal thalamus.", - "description": "Mostly gray regional part of the lateral thalamic region, consisting of a large group of nuclei lying between the internal medullary lamina and the internal capsule. It includes the ventral anterior, ventral lateral, and ventral posterior nuclei (MM: 2006-10-26)", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112319", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002776#ventral-nuclear-group-1", - "name": "ventral nuclear group", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002776", - "synonym": [ - "dorsal thalamus", - "nuclei ventrales thalami", - "ventral dorsal thalamic nuclear group", - "ventral group", - "ventral group of dorsal thalamus", - "ventral group of the dorsal thalamus", - "ventral nuclear group", - "ventral nuclear group of thalamus", - "ventral nuclear mass", - "ventral nuclei of thalamus", - "ventral thalamus nucleus", - "ventral tier thalamic nuclei", - "VNG" - ] -} diff --git a/instances/UBERONParcellation/ventralNucleusOfLateralLemniscus.jsonld b/instances/UBERONParcellation/ventralNucleusOfLateralLemniscus.jsonld deleted file mode 100644 index 95f986c68..000000000 --- a/instances/UBERONParcellation/ventralNucleusOfLateralLemniscus.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralNucleusOfLateralLemniscus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral nucleus of lateral lemniscus' is a brainstem nucleus, nucleus of lateral lemniscus and hindbrain nucleus. It is part of the pontine tegmentum.", - "description": "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112322", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002604#ventral-nucleus-of-lateral-lemniscus-1", - "name": "ventral nucleus of lateral lemniscus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002604", - "synonym": [ - "anterior nucleus of lateral lemniscus", - "nucleus anterior lemnisci lateralis", - "nucleus lemnisci lateralis pars ventralis", - "nucleus lemnisci lateralis ventralis", - "nucleus of the lateral lemniscus", - "nucleus of the lateral lemniscus ventral part", - "ventral nucleus of the lateral lemniscus", - "ventral part", - "VLL" - ] -} diff --git a/instances/UBERONParcellation/ventralNucleusOfMedialGeniculateBody.jsonld b/instances/UBERONParcellation/ventralNucleusOfMedialGeniculateBody.jsonld deleted file mode 100644 index a2857ff3e..000000000 --- a/instances/UBERONParcellation/ventralNucleusOfMedialGeniculateBody.jsonld +++ /dev/null @@ -1,34 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralNucleusOfMedialGeniculateBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral nucleus of medial geniculate body' is a nucleus of dorsal thalamus. It is part of the medial geniculate body.", - "description": "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112323", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002985#ventral-nucleus-of-medial-geniculate-body-1", - "name": "ventral nucleus of medial geniculate body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002985", - "synonym": [ - "medial geniculate complex", - "medial geniculate complex ventral part", - "medial geniculate nucleus", - "medial geniculate nucleus ventral part", - "medial nucleus of medial geniculate complex", - "MGV", - "nucleus corporis geniculati medialis", - "nucleus geniculatus medialis fasciculosis (Hassler)", - "nucleus geniculatus medialis fasciculosus (Hassler)", - "nucleus geniculatus medialis pars ventralis", - "nucleus ventralis corporis geniculati medialis", - "pars ventralis", - "ventral nucleus", - "ventral nucleus of medial geniculate body", - "ventral nucleus of medial geniculate complex", - "ventral nucleus of the medial geniculate body", - "ventral part", - "ventral principal nucleus of medial geniculate body", - "VMG" - ] -} diff --git a/instances/UBERONParcellation/ventralNucleusOfPosteriorCommissure.jsonld b/instances/UBERONParcellation/ventralNucleusOfPosteriorCommissure.jsonld deleted file mode 100644 index 2550c75c9..000000000 --- a/instances/UBERONParcellation/ventralNucleusOfPosteriorCommissure.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralNucleusOfPosteriorCommissure", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral nucleus of posterior commissure' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107753", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002044#nucleus-of-darkschewitsch", - "name": "ventral nucleus of posterior commissure", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002044", - "synonym": [ - "Darkshevich nucleus", - "Darkshevich's nucleus", - "Dk", - "nucleus accessorius", - "nucleus commissurae posterioris (Riley)", - "nucleus Darkschewitsch", - "nucleus Darkschewitschi", - "nucleus fasciculi longitudinalis medialis", - "Nucleus of Darkschewitsch", - "nucleus of Darkschewitsch (Cajal)", - "nucleus of Darkshevich", - "nucleus of the posterior commissure (Darkschewitsch)" - ] -} diff --git a/instances/UBERONParcellation/ventralNucleusOfTrapezoidBody.jsonld b/instances/UBERONParcellation/ventralNucleusOfTrapezoidBody.jsonld deleted file mode 100644 index 330751b86..000000000 --- a/instances/UBERONParcellation/ventralNucleusOfTrapezoidBody.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralNucleusOfTrapezoidBody", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral nucleus of trapezoid body' is a nucleus of trapezoid body. It is part of the periolivary nucleus.", - "description": "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112324", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002832#ventral-nucleus-of-trapezoid-body-1", - "name": "ventral nucleus of trapezoid body", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002832", - "synonym": [ - "anterior nucleus of trapezoid body", - "nucleus anterior corporis trapezoidei", - "nucleus ventralis corporis trapezoidei", - "ventral trapezoid nucleus", - "VNTB" - ] -} diff --git a/instances/UBERONParcellation/ventralOculomotorNucleus.jsonld b/instances/UBERONParcellation/ventralOculomotorNucleus.jsonld deleted file mode 100644 index 5806624e5..000000000 --- a/instances/UBERONParcellation/ventralOculomotorNucleus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralOculomotorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral oculomotor nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the oculomotor nuclear complex.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112325", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002934#ventral-oculomotor-nucleus-1", - "name": "ventral oculomotor nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002934", - "synonym": [ - "nucleus nervi oculomotorii", - "nucleus nervi oculomotorii ventrolateralis", - "pars ventralis", - "V3", - "ventral nucleus of oculomotor nuclear complex", - "ventral oculomotor cell column" - ] -} diff --git a/instances/UBERONParcellation/ventralPallidum.jsonld b/instances/UBERONParcellation/ventralPallidum.jsonld deleted file mode 100644 index 163863aaf..000000000 --- a/instances/UBERONParcellation/ventralPallidum.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralPallidum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A composite structure primarily of forebrain with arguable extension into the midbrain. It is part of the striatopallidal system, which is defined on the basis of neurochemistry and connectivity. It includes the portions of the globus pallidus and the substantia innominata located ventral to the anterior commissure; it extends into the anterior perforated substance and, in some respects, pars reticulata of the substantia nigra. Its boundary with the dorsal pallidum is indistinct in sections stained for Nissl substance (Heimer-95)", - "description": "'Ventral pallidum' is a cerebral hemisphere gray matter and pallidum. It is part of the globus pallidus and basal forebrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112326", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002778#ventral-pallidum-1", - "name": "ventral pallidum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002778", - "synonym": [ - "fibrae nervi vagi", - "globus pallidus ventral part", - "pallidum ventral region", - "ventral globus pallidus", - "ventral pallidum", - "VP" - ] -} diff --git a/instances/UBERONParcellation/ventralPosteriorNucleusOfThalamus.jsonld b/instances/UBERONParcellation/ventralPosteriorNucleusOfThalamus.jsonld deleted file mode 100644 index e2f86a548..000000000 --- a/instances/UBERONParcellation/ventralPosteriorNucleusOfThalamus.jsonld +++ /dev/null @@ -1,29 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralPosteriorNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral posterior nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the ventral nuclear group.", - "description": "Part of thalamus receiving primary somatic sensory information via the medial lemniscal pathway that projects to the primary somatosensory cortex (adapted from Paxinos, The Rat Nervous System, 2nd Ed, Academic Press, 1995).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112334", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002596#ventral-posterior-nucleus", - "name": "ventral posterior nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002596", - "synonym": [ - "nuclei ventrales posteriores", - "nucleus ventrales posteriores", - "nucleus ventralis posterior", - "ventral posterior", - "ventral posterior complex of the thalamus", - "ventral posterior nucleus", - "ventral posterior thalamic nucleus", - "ventrobasal complex", - "ventrobasal nucleus", - "ventroposterior inferior nucleus", - "ventroposterior nucleus", - "ventroposterior nucleus of thalamus", - "VP", - "VPN" - ] -} diff --git a/instances/UBERONParcellation/ventralPosteroinferiorNucleus.jsonld b/instances/UBERONParcellation/ventralPosteroinferiorNucleus.jsonld deleted file mode 100644 index 9ce3a644f..000000000 --- a/instances/UBERONParcellation/ventralPosteroinferiorNucleus.jsonld +++ /dev/null @@ -1,38 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralPosteroinferiorNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral posteroinferior nucleus' is a nucleus of dorsal thalamus. It is part of the ventral posterior nucleus of thalamus.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112335", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002939#ventral-posteroinferior-nucleus-1", - "name": "ventral posteroinferior nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002939", - "synonym": [ - "inferior part", - "nuclei ventrales posteriores thalami", - "nuclei ventrobasales thalami", - "nucleus thalamicus posteromedialis", - "nucleus ventralis posterior inferior thalami", - "nucleus ventrocaudalis parvocellularis extremus (Hassler)", - "pars inferior", - "ventral posterior", - "ventral posterior complex of the thalamus", - "ventral posterior inferior nucleus", - "ventral posterior inferior nucleus of dorsal thalamus", - "ventral posterior inferior nucleus of thalamus", - "ventral posterior inferior thalamic nucleus", - "ventral posterior nuclei of thalamus", - "ventral posterior nucleus of thalamus", - "ventral posterolateral thalamic nucleus", - "ventroposterior inferior nucleus", - "ventroposterior inferior thalamic", - "ventroposterior inferior thalamic nucleus", - "ventroposterior nucleus", - "ventroposterior nucleus of thalamus", - "VPI", - "VPN" - ] -} diff --git a/instances/UBERONParcellation/ventralPosterolateralNucleus.jsonld b/instances/UBERONParcellation/ventralPosterolateralNucleus.jsonld deleted file mode 100644 index 525c07397..000000000 --- a/instances/UBERONParcellation/ventralPosterolateralNucleus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralPosterolateralNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral posterolateral nucleus' is a nucleus of dorsal thalamus. It is part of the ventral posterior nucleus of thalamus.", - "description": "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112336", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002942#ventral-posterolateral-nucleus-1", - "name": "ventral posterolateral nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002942", - "synonym": [ - "general", - "nucleus ventralis posterior lateralis thalami", - "nucleus ventralis posterolateralis", - "nucleus ventralis posterolateralis thalami", - "nucleus ventralis thalami posterior lateralis", - "posterolateral ventral nucleus of thalamus", - "posterolateral ventral nucleus of the thalamus", - "principal part", - "ventral posterior lateral nucleus", - "ventral posterior lateral nucleus of dorsal thalamus", - "ventral posterolateral nucleus of thalamus", - "ventral posterolateral nucleus of the thalamus", - "ventral posterolateral nucleus of the thalamus principal part", - "ventral posterolateral thalamic nucleus", - "ventroposterior lateral thalamic nucleus", - "ventroposterolateral nucleus of the thalamus", - "VPL" - ] -} diff --git a/instances/UBERONParcellation/ventralPosteromedialNucleusOfThalamus.jsonld b/instances/UBERONParcellation/ventralPosteromedialNucleusOfThalamus.jsonld deleted file mode 100644 index 6f9e61e2c..000000000 --- a/instances/UBERONParcellation/ventralPosteromedialNucleusOfThalamus.jsonld +++ /dev/null @@ -1,41 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralPosteromedialNucleusOfThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral posteromedial nucleus of thalamus' is a nucleus of dorsal thalamus. It is part of the ventral posterior nucleus of thalamus.", - "description": "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112339", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002945#ventral-posteromedial-nucleus", - "name": "ventral posteromedial nucleus of thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002945", - "synonym": [ - "arcuate nucleus of thalamus", - "arcuate nucleus of the thalamus", - "arcuate nucleus-3", - "general", - "nucleus arcuatus thalami", - "nucleus semilunaris thalami", - "nucleus ventralis posterior medialis thalami", - "nucleus ventralis posteromedialis", - "nucleus ventralis posteromedialis thalami", - "nucleus ventrocaudalis anterior internus (Hassler)", - "posteromedial ventral nucleus", - "posteromedial ventral nucleus of thalamus", - "posteromedial ventral nucleus of the thalamus", - "principal part", - "semilunar nucleus", - "thalamic gustatory nucleus", - "ventral posterior medial nucleus", - "ventral posterior medial nucleus of dorsal thalamus", - "ventral posterior medial nucleus of thalamus", - "ventral posteromedial nucleus of thalamus", - "ventral posteromedial nucleus of the thalamus", - "ventral posteromedial nucleus of the thalamus principal part", - "ventral posteromedial thalamic nucleus", - "ventroposterior medial thalamic nucleus", - "ventroposteromedial nucleus of the thalamus", - "VPM" - ] -} diff --git a/instances/UBERONParcellation/ventralStriatum.jsonld b/instances/UBERONParcellation/ventralStriatum.jsonld deleted file mode 100644 index 525504421..000000000 --- a/instances/UBERONParcellation/ventralStriatum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralStriatum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral striatum' is a gray matter of telencephalon. It is part of the striatum.", - "description": "A composite structure of the telencephalon that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes the nucleus accumbens, the most ventral portions of the caudate nucleus and the putamen, the rostrolateral portion of the anterior perforated substance, the islands of Calleja and a rostral subcommissural portion of substantia innominata. The boundary between the ventral striatum and dorsal striatum is indistinct in sections stained for Nissl substance (Heimer-1995; adapted from Brain Info).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112346", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005403#ventral-striatum", - "name": "ventral striatum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005403", - "synonym": [ - "striatum ventral region", - "striatum ventrale" - ] -} diff --git a/instances/UBERONParcellation/ventralTegmentalArea.jsonld b/instances/UBERONParcellation/ventralTegmentalArea.jsonld deleted file mode 100644 index 461251f71..000000000 --- a/instances/UBERONParcellation/ventralTegmentalArea.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralTegmentalArea", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral tegmental area' is a regional part of brain. It is part of the midbrain tegmentum.", - "description": "Unpaired midbrain region situated in the ventromedial portion of the reticular formation. The VTA is medial to the substantia nigra and ventral to the red nucleus, and extends caudally from the posterior hypothalamus in the diencephalon. The VTA contains dopamine neurons that project to various limbic and cortical areas and is a critical component of the brain's reward circuitry.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112351", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002691#ventral-tegmental-area-1", - "name": "ventral tegmental area", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002691", - "synonym": null -} diff --git a/instances/UBERONParcellation/ventralTegmentalDecussation.jsonld b/instances/UBERONParcellation/ventralTegmentalDecussation.jsonld deleted file mode 100644 index 6a1ca3456..000000000 --- a/instances/UBERONParcellation/ventralTegmentalDecussation.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralTegmentalDecussation", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral tegmental decussation' is a neural decussation. It is part of the ventral tegmental area.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112354", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002615#ventral-tegmental-decussation-1", - "name": "ventral tegmental decussation", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002615", - "synonym": null -} diff --git a/instances/UBERONParcellation/ventralTegmentalNucleus.jsonld b/instances/UBERONParcellation/ventralTegmentalNucleus.jsonld deleted file mode 100644 index ff425b559..000000000 --- a/instances/UBERONParcellation/ventralTegmentalNucleus.jsonld +++ /dev/null @@ -1,32 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralTegmentalNucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A nucleus of brain that is part of a ventral tegmental area.", - "description": "'Ventral tegmental nucleus' is a brainstem nucleus and midbrain nucleus. It is part of the midbrain tegmentum.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112355", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002438#ventral-tegmental-nucleus", - "name": "ventral tegmental nucleus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002438", - "synonym": [ - "anterior tegmental nuclei", - "anterior tegmental nucleus", - "Deep tegmental nucleus of Gudden", - "ganglion profundum tegmenti", - "ganglion tegmenti ventrale", - "nucleus of Gudden", - "nucleus tegmentales anteriores", - "nucleus tegmentalis anterior", - "nucleus tegmenti ventralis", - "nucleus ventralis tegmenti", - "nucleus ventralis tegmenti (Gudden)", - "rostral tegmental nucleus", - "ventral raphe tegmental nucleus", - "ventral tegmental nuclei", - "Ventral tegmental nucleus (Gudden)", - "Ventral tegmental nucleus of Gudden", - "VTg" - ] -} diff --git a/instances/UBERONParcellation/ventralThalamus.jsonld b/instances/UBERONParcellation/ventralThalamus.jsonld deleted file mode 100644 index 4eaf7bb6a..000000000 --- a/instances/UBERONParcellation/ventralThalamus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralThalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral thalamus' is a regional part of brain. It is part of the dorsal plus ventral thalamus.", - "description": "Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111230", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001900#subthalamus", - "name": "ventral thalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001900", - "synonym": [ - "perithalamus", - "prethalamus", - "SbTh", - "subthalamic region", - "Subthalamus", - "thalamus ventralis", - "ventral thalamus" - ] -} diff --git a/instances/UBERONParcellation/ventralTrigeminalTract.jsonld b/instances/UBERONParcellation/ventralTrigeminalTract.jsonld deleted file mode 100644 index 6890a92e4..000000000 --- a/instances/UBERONParcellation/ventralTrigeminalTract.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventralTrigeminalTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventral trigeminal tract' is a trigeminothalamic tract and tract of brain. It is part of the pontine tegmentum.", - "description": "The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons .", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112361", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002549#ventral-trigeminal-tract-1", - "name": "ventral trigeminal tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002549", - "synonym": [ - "anterior trigeminothalamic tract", - "tractus trigeminalis ventralis", - "tractus trigeminothalamicus anterior", - "trigeminal lemniscus-2", - "ventral crossed tract", - "ventral secondary ascending tract of V", - "ventral trigeminal pathway", - "ventral trigeminal tract", - "ventral trigeminothalamic tract" - ] -} diff --git a/instances/UBERONParcellation/ventricularSystemOfBrain.jsonld b/instances/UBERONParcellation/ventricularSystemOfBrain.jsonld deleted file mode 100644 index 09c2cd738..000000000 --- a/instances/UBERONParcellation/ventricularSystemOfBrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventricularSystemOfBrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventricular system of brain' is an anatomical system. It is part of the brain and ventricular system of central nervous system.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731568", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005282#ventricular-system-of-brain", - "name": "ventricular system of brain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005282", - "synonym": null -} diff --git a/instances/UBERONParcellation/ventricularZone.jsonld b/instances/UBERONParcellation/ventricularZone.jsonld deleted file mode 100644 index a8b4f2b94..000000000 --- a/instances/UBERONParcellation/ventricularZone.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventricularZone", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventricular zone' is an anatomical entity. It is part of the brain and ventricular system of central nervous system.", - "description": "Proliferative region that is part of the ventricular system.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729517", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003053#ventricular-zone", - "name": "ventricular zone", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003053", - "synonym": null -} diff --git a/instances/UBERONParcellation/ventromedialNucleusOfHypothalamus.jsonld b/instances/UBERONParcellation/ventromedialNucleusOfHypothalamus.jsonld deleted file mode 100644 index 0527ee28a..000000000 --- a/instances/UBERONParcellation/ventromedialNucleusOfHypothalamus.jsonld +++ /dev/null @@ -1,27 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ventromedialNucleusOfHypothalamus", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Ventromedial nucleus of hypothalamus' is a hypothalamic nucleus. It is part of the intermediate hypothalamic region.", - "description": "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112378", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001935#ventromedial-nucleus-of-hypothalamus-1", - "name": "ventromedial nucleus of hypothalamus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001935", - "synonym": [ - "nucleus hypothalamicus ventromedialis", - "nucleus ventromedialis hypothalami", - "tuberal nucleus (Ganser)", - "ventrolateral hypothalamic nucleus", - "ventrolateral nucleus of hypothalamus", - "ventromedial hypothalamic nucleus", - "ventromedial hypothalamus", - "ventromedial nucleus", - "ventromedial nucleus hypothalamus", - "ventromedial nucleus of hypothalamus.", - "ventromedial nucleus of the hypothalamus", - "VMH" - ] -} diff --git a/instances/UBERONParcellation/vermisOfTheFlocculonodularLobeOfTheCerebellum.jsonld b/instances/UBERONParcellation/vermisOfTheFlocculonodularLobeOfTheCerebellum.jsonld deleted file mode 100644 index 24edc999d..000000000 --- a/instances/UBERONParcellation/vermisOfTheFlocculonodularLobeOfTheCerebellum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vermisOfTheFlocculonodularLobeOfTheCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vermis of the flocculonodular lobe of the cerebellum' is a cerebellar vermis.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112409", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0024037#vermis-of-the-flocculonodular-lobe-of-the-cerebellum-1", - "name": "vermis of the flocculonodular lobe of the cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0024037", - "synonym": [ - "flocculonodular vermis", - "vermis of the flocculonodular lobe of the cerebellum" - ] -} diff --git a/instances/UBERONParcellation/verticalLimbOfTheDiagonalBand.jsonld b/instances/UBERONParcellation/verticalLimbOfTheDiagonalBand.jsonld deleted file mode 100644 index 1ec41d930..000000000 --- a/instances/UBERONParcellation/verticalLimbOfTheDiagonalBand.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/verticalLimbOfTheDiagonalBand", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vertical limb of the diagonal band' is a subdivision of diagonal band.", - "description": "", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112424", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006124#vertical-limb-of-the-diagonal-band-1", - "name": "vertical limb of the diagonal band", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006124", - "synonym": [ - "crus verticale striae diagonalis", - "nucleus of the vertical limb of the diagonal band", - "vertical limb of diagonal band", - "vertical limb of the diagonal band", - "Vertical limb of the diagonal band of Broca" - ] -} diff --git a/instances/UBERONParcellation/vessel.jsonld b/instances/UBERONParcellation/vessel.jsonld deleted file mode 100644 index 50d982995..000000000 --- a/instances/UBERONParcellation/vessel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vessel", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'vessel' is an anatomical conduit.", - "description": "A tubular structure that contains, conveys body fluid, such as blood or lymph.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731576", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000055#vessel", - "name": "vessel", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000055", - "synonym": null -} diff --git a/instances/UBERONParcellation/vestibularNuclearComplex.jsonld b/instances/UBERONParcellation/vestibularNuclearComplex.jsonld deleted file mode 100644 index cfcf55102..000000000 --- a/instances/UBERONParcellation/vestibularNuclearComplex.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vestibularNuclearComplex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vestibular nuclear complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata.", - "description": "Nuclear complex containing the vestibular nuclei.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112452", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002673#vestibular-nuclear-complex-1", - "name": "vestibular nuclear complex", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002673", - "synonym": [ - "nuclei vestibulares", - "nuclei vestibulares in medulla oblongata", - "vestibular nuclei", - "vestibular nuclei in medulla oblongata", - "vestibular nucleus" - ] -} diff --git a/instances/UBERONParcellation/vestibulocerebellarTract.jsonld b/instances/UBERONParcellation/vestibulocerebellarTract.jsonld deleted file mode 100644 index facdc1d4d..000000000 --- a/instances/UBERONParcellation/vestibulocerebellarTract.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vestibulocerebellarTract", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vestibulocerebellar tract' is a tract of brain. It is part of the pontine tegmentum.", - "description": "White matter tract containing axons arising in the vestibular ganglion primarily projecting to the ipsilateral cerebellum via the inferior cerebellar peduncle (Heimer, L. The Human Brain, 2nd ed., 1995, pg 370).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112459", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002552#vestibulocerebellar-tract-1", - "name": "vestibulocerebellar tract", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002552", - "synonym": null -} diff --git a/instances/UBERONParcellation/vestibulocerebellum.jsonld b/instances/UBERONParcellation/vestibulocerebellum.jsonld deleted file mode 100644 index a742217c5..000000000 --- a/instances/UBERONParcellation/vestibulocerebellum.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vestibulocerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vestibulocerebellum' is a regional part of brain. It is part of the cerebellum.", - "description": "A phylogenetic subdivision of the cerebellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725946", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014642#vestibulocerebellum", - "name": "vestibulocerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014642", - "synonym": null -} diff --git a/instances/UBERONParcellation/vestibulocochlearNerveRoot.jsonld b/instances/UBERONParcellation/vestibulocochlearNerveRoot.jsonld deleted file mode 100644 index f69f903ce..000000000 --- a/instances/UBERONParcellation/vestibulocochlearNerveRoot.jsonld +++ /dev/null @@ -1,24 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/vestibulocochlearNerveRoot", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Vestibulocochlear nerve root' is a root of cranial nerve. It is part of the pontine tegmentum.", - "description": "Either of the two roots that come of the vestibulocochlear nerve", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112460", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002731#vestibulocochlear-nerve-fiber-bundle", - "name": "vestibulocochlear nerve root", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002731", - "synonym": [ - "8cn", - "central part of vestibulocochlear nerve", - "fibrae nervi statoacustici", - "root of vestibulocochlear nerve", - "statoacoustic nerve fibers", - "vestibular root of vestibulocochlear nerve", - "vestibulocochlear nerve fibers", - "vestibulocochlear nerve roots", - "vestibulocochlear nerve tract" - ] -} diff --git a/instances/UBERONParcellation/whiteMatterLaminaOfCerebellum.jsonld b/instances/UBERONParcellation/whiteMatterLaminaOfCerebellum.jsonld deleted file mode 100644 index 709ce8267..000000000 --- a/instances/UBERONParcellation/whiteMatterLaminaOfCerebellum.jsonld +++ /dev/null @@ -1,25 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/whiteMatterLaminaOfCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'White matter lamina of cerebellum' is a white matter lamina of neuraxis. It is part of the cerebellum.", - "description": "The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0112629", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014540#white-laminae-of-cerebellum", - "name": "white matter lamina of cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014540", - "synonym": [ - "isthmus cinguli", - "isthmus gyri cingulatus", - "isthmus gyri cinguli", - "isthmus of gyrus fornicatus", - "isthmus of the cingulate gyrus", - "isthmus-2", - "lamina alba of cerebellar cortex", - "laminae albae of cerebellar cortex", - "white lamina of cerebellum", - "white laminae of cerebellum" - ] -} diff --git a/instances/UBERONParcellation/whiteMatterOfCerebellum.jsonld b/instances/UBERONParcellation/whiteMatterOfCerebellum.jsonld deleted file mode 100644 index 8735be9f0..000000000 --- a/instances/UBERONParcellation/whiteMatterOfCerebellum.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/whiteMatterOfCerebellum", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'white matter of cerebellum' is a regional part of the cerebellum. It is a part of the overall brain white matter.", - "description": "Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles. [BIRNLEX:1562]", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101962", - "knowledgeSpaceLink": null, - "name": "white matter of cerebellum", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002317", - "synonym": [ - "cerebellar white matter", - "cerebellum white matter" - ] -} diff --git a/instances/UBERONParcellation/whiteMatterOfHindbrain.jsonld b/instances/UBERONParcellation/whiteMatterOfHindbrain.jsonld deleted file mode 100644 index fe3aca013..000000000 --- a/instances/UBERONParcellation/whiteMatterOfHindbrain.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/whiteMatterOfHindbrain", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'White matter of hindbrain' is a brain white matter. It is part of the hindbrain.", - "description": "A white matter that is part of the hindbrain.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0733772", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019258#white-matter-of-hindbrain", - "name": "white matter of hindbrain", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019258", - "synonym": null -} diff --git a/instances/UBERONParcellation/whiteMatterOfMedullaOblongata.jsonld b/instances/UBERONParcellation/whiteMatterOfMedullaOblongata.jsonld deleted file mode 100644 index 53ac8eb10..000000000 --- a/instances/UBERONParcellation/whiteMatterOfMedullaOblongata.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/whiteMatterOfMedullaOblongata", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "A white matter that is part of a medulla oblongata.", - "description": "'White matter of medulla oblongata' is a brainstem white matter and white matter of myelencephalon. It is part of the medulla oblongata.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106748", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014649#medullary-white-matter", - "name": "white matter of medulla oblongata", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014649", - "synonym": [ - "medullary white matter", - "substantia alba medullae oblongatae", - "white matter of medulla", - "white substance of medulla" - ] -} diff --git a/instances/UBERONParcellation/whiteMatterOfTheCerebellarCortex.jsonld b/instances/UBERONParcellation/whiteMatterOfTheCerebellarCortex.jsonld deleted file mode 100644 index afa6d8cc9..000000000 --- a/instances/UBERONParcellation/whiteMatterOfTheCerebellarCortex.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/whiteMatterOfTheCerebellarCortex", - "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'White matter of the cerebellar cortex' is a white matter of metencephalon. 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"description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "SRP", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/anatomicalIdentificationType/landmarkBased.jsonld b/instances/anatomicalIdentificationType/landmarkBased.jsonld deleted file mode 100644 index c8cb4edce..000000000 --- a/instances/anatomicalIdentificationType/landmarkBased.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/anatomicalIdentificationType/landmarkBased", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnatomicalIdentificationType", - "definition": "'Landmark based' identification makes use of distinct anatomical structures as a point of orientation in locating other structures in the body.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "landmark based", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/anatomicalIdentificationType/stereotactic.jsonld b/instances/anatomicalIdentificationType/stereotactic.jsonld deleted file mode 100644 index a69522357..000000000 --- a/instances/anatomicalIdentificationType/stereotactic.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/anatomicalIdentificationType/stereotactic", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnatomicalIdentificationType", - "definition": "'Stereotactic' identification makes use of three-dimensional coordinate system to loacte specific targets inside the body. 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"interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "probabalistic annotation", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/annotationType/annotationContourLine.jsonld b/instances/annotationType/annotationContourLine.jsonld deleted file mode 100644 index fc993c26a..000000000 --- a/instances/annotationType/annotationContourLine.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/annotationType/annotationContourLine", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnnotationType", - "definition": "An 'annotation contour line' is a two-dimensional boundary of an area of interest.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "annotation contour line", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/annotationType/annotationMask.jsonld b/instances/annotationType/annotationMask.jsonld deleted file mode 100644 index a064c03bd..000000000 --- a/instances/annotationType/annotationMask.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/annotationType/annotationMask", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnnotationType", - "definition": "An 'annotation mask' is a filled object masking an area or volume of interest.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "annotation mask", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/annotationType/annotationPoint.jsonld b/instances/annotationType/annotationPoint.jsonld deleted file mode 100644 index 134e1f2b7..000000000 --- a/instances/annotationType/annotationPoint.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/annotationType/annotationPoint", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnnotationType", - "definition": "'Annotation point(s)' are individual point(s) that are annotated with the same label.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "annotation point", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/annotationType/annotationSurface.jsonld b/instances/annotationType/annotationSurface.jsonld deleted file mode 100644 index 70a67ac26..000000000 --- a/instances/annotationType/annotationSurface.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/annotationType/annotationSurface", - "@type": "https://openminds.ebrains.eu/controlledTerms/AnnotationType", - "definition": "An 'annotation surface' is a three-dimensional boundary of a volume of interest.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "annotation surface", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/atlasType/deterministicAtlas.jsonld b/instances/atlasType/deterministicAtlas.jsonld deleted file mode 100644 index 8a278f683..000000000 --- a/instances/atlasType/deterministicAtlas.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/atlasType/deterministicAtlas", - "@type": "https://openminds.ebrains.eu/controlledTerms/AtlasType", - "definition": "A 'deterministic atlas' is an anatomical or anatomopathological atlases based on a definite composite of a single specimen.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "deterministic atlas", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/atlasType/parcellationScheme.jsonld b/instances/atlasType/parcellationScheme.jsonld deleted file mode 100644 index f87b65b29..000000000 --- a/instances/atlasType/parcellationScheme.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/atlasType/parcellationScheme", - "@type": "https://openminds.ebrains.eu/controlledTerms/AtlasType", - "definition": "A 'parcellation scheme' is a set of parcels occupying a part or all of an anatomical entity that has been delineated or annotated using a common approach or set of criteria.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/ilx_0108526", - "knowledgeSpaceLink": null, - "name": "parcellation scheme", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/nlx_144019", - "synonym": [ - "partition scheme" - ] -} diff --git a/instances/atlasType/probabilisticAtlas.jsonld b/instances/atlasType/probabilisticAtlas.jsonld deleted file mode 100644 index e58dd228f..000000000 --- a/instances/atlasType/probabilisticAtlas.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/atlasType/probabilisticAtlas", - "@type": "https://openminds.ebrains.eu/controlledTerms/AtlasType", - "definition": "A 'probabilistic atlas' is an anatomical or anatomopathological atlases based on statistically-weighted composites of many specimens.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "probabilistic atlas", - "preferredOntologyIdentifier": null, - "synonym": [ - "probability map" - ] -} diff --git a/instances/auditoryStimulusType/realSpokenWord.jsonld b/instances/auditoryStimulusType/realSpokenWord.jsonld deleted file mode 100644 index e2240fd34..000000000 --- a/instances/auditoryStimulusType/realSpokenWord.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/auditoryStimulusType/realSpokenWord", - "@type": "https://openminds.ebrains.eu/controlledTerms/AuditoryStimulusType", - "definition": "A speech sound or series of speech sounds that symbolizes and communicates a meaning (usually) without being divisible into smaller units capable of independent use. 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"synonym": [ - "carnivore" - ] -} diff --git a/instances/biologicalOrder/cypriniformes.jsonld b/instances/biologicalOrder/cypriniformes.jsonld deleted file mode 100644 index 1b794491c..000000000 --- a/instances/biologicalOrder/cypriniformes.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/biologicalOrder/cypriniformes", - "@type": "https://openminds.ebrains.eu/controlledTerms/BiologicalOrder", - "definition": "The biological order *Cypriniformes* belongs to the class *Actinopterygii* (ray-finned fishes).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0737279", - "knowledgeSpaceLink": null, - "name": "Cypriniformes", - "preferredOntologyIdentifier": "http://id.nlm.nih.gov/mesh/2018/M0005508", - "synonym": null -} diff --git a/instances/biologicalOrder/didelphimorphia.jsonld b/instances/biologicalOrder/didelphimorphia.jsonld deleted file mode 100644 index e1e60e571..000000000 --- a/instances/biologicalOrder/didelphimorphia.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - 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"cerebellar Golgi neuron", - "cerebellum Golgi neuron", - "Golgi cell", - "Golgi neuron" - ] -} diff --git a/instances/cellType/cerebellumGranuleCell.jsonld b/instances/cellType/cerebellumGranuleCell.jsonld deleted file mode 100644 index 910b02101..000000000 --- a/instances/cellType/cerebellumGranuleCell.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/cerebellumGranuleCell", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": "'Cerebellum granule cells' form the thick granular layer of the cerebellar cortex and typically have small cell bodies but varying functions.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/ilx_0101967", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NIFEXT:128#cerebellum-granule-cell", - "name": "cerebellum granule cell", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/nifext_128", - "synonym": [ - "cerebellar granule cell", - "cerebellar granule neuron", - "cerebellum granule neuron" - ] -} diff --git a/instances/cellType/cerebellumStellateNeuron.jsonld b/instances/cellType/cerebellumStellateNeuron.jsonld deleted file mode 100644 index 32d3db7d4..000000000 --- a/instances/cellType/cerebellumStellateNeuron.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/cerebellumStellateNeuron", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": "Any cerebellar neuron that has a star-like shape formed by dendritic processes radiating from the cell body.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/ilx_0101975", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NIFEXT:130#cerebellum-stellate-cell", - "name": "cerebellum stellate neuron", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/nifext_130", - 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"knowledgeSpaceLink": "https://knowledge-space.org/wiki/NIFEXT:56#neocortex-basket-cell", - "name": "cortical basket cell", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/nifext_56", - "synonym": [ - "basket cell", - "cortical basket neuron", - "neocortex basket cell", - "neocortical basket cell" - ] -} diff --git a/instances/cellType/corticalInterneuron.jsonld b/instances/cellType/corticalInterneuron.jsonld deleted file mode 100644 index cc1cd6778..000000000 --- a/instances/cellType/corticalInterneuron.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/corticalInterneuron", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "cortical interneuron", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/cellType/dopaminergicNeuron.jsonld b/instances/cellType/dopaminergicNeuron.jsonld deleted file mode 100644 index 5ba9fbf93..000000000 --- a/instances/cellType/dopaminergicNeuron.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - 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"name": "inhibitory neuron", - "preferredOntologyIdentifier": null, - "synonym": [ - "inhibitory cell" - ] -} diff --git a/instances/cellType/interneuron.jsonld b/instances/cellType/interneuron.jsonld deleted file mode 100644 index 3c2df3157..000000000 --- a/instances/cellType/interneuron.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/interneuron", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": "An 'interneuron' is neuron that cannot be classified as sensory receptor or motor neuron.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "interneuron", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/cellType/macroglialCell.jsonld b/instances/cellType/macroglialCell.jsonld deleted file mode 100644 index 51ac3e917..000000000 --- a/instances/cellType/macroglialCell.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/macroglialCell", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": "'Macroglial cells' are large glial cells in the central nervous system.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106438", - "knowledgeSpaceLink": null, - "name": "macroglial cell", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/cellType/microglialCell.jsonld b/instances/cellType/microglialCell.jsonld deleted file mode 100644 index 29a98c9c6..000000000 --- a/instances/cellType/microglialCell.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/cellType/microglialCell", - "@type": "https://openminds.ebrains.eu/controlledTerms/CellType", - "definition": "'Microglial cells' are small, migratory, phagocytic, interstitial glial cells in the central nervous system.", - 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[adapted from [Wikipedia](https://en.wikipedia.org/wiki/Brain_ischemia#Focal_brain_ischemia)]", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "focal cerebral ischemia", - "preferredOntologyIdentifier": null, - "synonym": [ - "focal brain ischemia", - "focal ischemic brain injury" - ] -} diff --git a/instances/disease/fragileXsyndrome.jsonld b/instances/disease/fragileXsyndrome.jsonld deleted file mode 100644 index b23250c36..000000000 --- a/instances/disease/fragileXsyndrome.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/fragileXsyndrome", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "fragile X syndrome", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/DOID_14261", - "synonym": null -} diff --git a/instances/disease/glioma.jsonld b/instances/disease/glioma.jsonld deleted file mode 100644 index 33cb18b73..000000000 --- a/instances/disease/glioma.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/glioma", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A benign or malignant brain and spinal cord tumor that arises from glial cells (astrocytes, oligodendrocytes, ependymal cells).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104647", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/BIRNLEX:12618#glioma", - "name": "glioma", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/birnlex_12618", - "synonym": [ - "glial neoplasm", - "neoplasm of the neuroglia", - "neuroglial neoplasm", - "neuroglial tumor", - "tumor of neuroglia", - "tumor of the neuroglia" - ] -} diff --git a/instances/disease/malignantNeoplasm.jsonld b/instances/disease/malignantNeoplasm.jsonld deleted file mode 100644 index fcc5a8e7a..000000000 --- a/instances/disease/malignantNeoplasm.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/malignantNeoplasm", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A 'malignant neoplasm' is composed of atypical, often pleomorphic cells that uncontrollably grow and multiply, spreading into surrounding tissue and even invading distant anatomic sites (metastasis). Many malignant neoplasm form solid tumors, but cancers of the blood generally do not. [(adapted from [NCI](https://www.cancer.gov/about-cancer/understanding/what-is-cancer)].", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0752652", - "knowledgeSpaceLink": null, - "name": "malignant neoplasm", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCIT_C9305", - "synonym": [ - "cancer" - ] -} diff --git a/instances/disease/meningioma.jsonld b/instances/disease/meningioma.jsonld deleted file mode 100644 index 65c295ba2..000000000 --- a/instances/disease/meningioma.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/meningioma", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A generally slow growing tumor attached to the dura mater and composed of neoplastic meningothelial (arachnoidal) cells.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106789", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/BIRNLEX:12601#meningioma", - "name": "meningioma", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/birnlex_12601", - "synonym": [ - "meningeal neoplasm", - "meningothelial cell tumor", - "neoplasm of the meninges", - "primary meningeal tumor", - "supratentorial meningioma" - ] -} diff --git a/instances/disease/mentalDisorder.jsonld b/instances/disease/mentalDisorder.jsonld deleted file mode 100644 index cdaf72fb5..000000000 --- a/instances/disease/mentalDisorder.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/mentalDisorder", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A 'mental disorder' is characterized by a clinically significant disturbance in an individual’s cognition, emotional regulation, or behaviour and is usually associated with distress or impairment in important areas of functioning. [adapted from [WHO fact-sheets](https://www.who.int/news-room/fact-sheets/detail/mental-disorders)]", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106792", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/BIRNLEX:12669#mental-disorder", - "name": "mental disorder", - "preferredOntologyIdentifier": "http://uri.interlex.org/base/ilx_0106792", - "synonym": [ - "mental disease", - "mental illness", - "psychiatric disease", - "psychiatric disorder" - ] -} diff --git a/instances/disease/minimallyConsciousState.jsonld b/instances/disease/minimallyConsciousState.jsonld deleted file mode 100644 index 4d249feb8..000000000 --- a/instances/disease/minimallyConsciousState.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/minimallyConsciousState", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A 'minimally conscious state' (MCS) is a disorder of consciousness with partial preservation of conscious awareness. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Minimally_conscious_state)]", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "minimally conscious state", - "preferredOntologyIdentifier": null, - "synonym": [ - "MCS" - ] -} diff --git a/instances/disease/multipleSclerosis.jsonld b/instances/disease/multipleSclerosis.jsonld deleted file mode 100644 index c37178348..000000000 --- a/instances/disease/multipleSclerosis.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/multipleSclerosis", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "'Multiple sclerosis' is a disorder in which the body's immune system attacks the protective meylin covering of the nerve cells in the brain, optic nerve and spinal cord (adaped from the [Mayo clinic](https://www.mayoclinic.org/diseases-conditions/multiple-sclerosis/symptoms-causes/syc-20350269#:~:text=Multiple%20sclerosis%20is%20a%20disorder,insulation%20on%20an%20electrical%20wire.))", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0756481", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/BIRNLEX:12514#multiple-sclerosis-1", - "name": "multiple sclerosis", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/DOID_2377", - "synonym": [ - "MS", - "generalized multiple sclerosis" - ] -} diff --git a/instances/disease/parkinsonsDisease.jsonld b/instances/disease/parkinsonsDisease.jsonld deleted file mode 100644 index 50cbb3c03..000000000 --- a/instances/disease/parkinsonsDisease.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/parkinsonsDisease", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "Parkinson's is a progressive central nervous system disorder that affects the motor system.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Parkinson's disease", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/DOID_14330", - "synonym": null -} diff --git a/instances/disease/stroke.jsonld b/instances/disease/stroke.jsonld deleted file mode 100644 index 0fe514354..000000000 --- a/instances/disease/stroke.jsonld +++ /dev/null @@ -1,20 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/stroke", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A sudden loss of neurological function secondary to hemorrhage or ischemia in the brain parenchyma due to a vascular event.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/ilx_0738754", - "knowledgeSpaceLink": null, - "name": "stroke", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/DOID_6713", - "synonym": [ - "cerebral infaction", - "cerebrovascular accident", - "cerebrovascular disease", - "CVA", - "stroke disorder" - ] -} diff --git a/instances/disease/tremor.jsonld b/instances/disease/tremor.jsonld deleted file mode 100644 index 1c019b270..000000000 --- a/instances/disease/tremor.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/tremor", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "A tremor is a cyclical movement of a body part that can represent either a physiologic process or a manifestation of disease.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111946", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/BIRNLEX:12664#tremor", - "name": "tremor", - "preferredOntologyIdentifier": "http://uri.interlex.org/ilx_0111946", - "synonym": null -} diff --git a/instances/disease/trigeminalNeuralgia.jsonld b/instances/disease/trigeminalNeuralgia.jsonld deleted file mode 100644 index 749810a8f..000000000 --- a/instances/disease/trigeminalNeuralgia.jsonld +++ /dev/null @@ -1,23 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/trigeminalNeuralgia", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "Trigeminal neuralgia is a chronic pain disorder that affects the trigeminal nerve.", - "description": "There are two main types of trigeminal neuralgia: typical and atypical. The typical form results in episodes of severe, sudden, shock-like pain in one side of the face that lasts for seconds to a few minutes. Groups of these episodes can occur over a few hours. The atypical form results in a constant burning pain that is less severe. Episodes may be triggered by any touch to the face. Both forms may occur in the same person. It is one of the most painful conditions, and can result in depression. The exact cause is unclear, but believed to involve loss of the myelin around the trigeminal nerve. This may occur due to compression from a blood vessel as the nerve exits the brain stem, multiple sclerosis, stroke, or trauma. Less common causes include a tumor or arteriovenous malformation. It is a type of nerve pain. Diagnosis is typically based on the symptoms, after ruling out other possible causes such as postherpetic neuralgia. It is estimated that 1 in 8,000 people per year develop trigeminal neuralgia. It usually begins in people over 50 years old, but can occur at any age. Women are more commonly affected than men. The condition was first described in detail in 1773 by John Fothergill.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0758102", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/DOID:12098#trigeminal-neuralgia", - "name": "trigeminal neuralgia", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/MONDO_0008599", - "synonym": [ - "Fothergill disease", - "neuralgia of trigeminal nerve", - "TGN", - "tic douloureux", - "TN", - "trifacial neuralgia", - "trifocal neuralgia", - "trigeminal nerve neuralgia" - ] -} diff --git a/instances/disease/unresponsiveWakefulnessSyndrome.jsonld b/instances/disease/unresponsiveWakefulnessSyndrome.jsonld deleted file mode 100644 index 01dd60b89..000000000 --- a/instances/disease/unresponsiveWakefulnessSyndrome.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/unresponsiveWakefulnessSyndrome", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": "The 'unresponsive wakefulness syndrome' (UWS) is a disorder of consciousness, formerly known as vegetative state, with only reflexive behavior and no sign of conscious awareness [[Laureys et al. 2010](https://doi.org/10.1186/1741-7015-8-68)].", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "unresponsive wakefulness syndrome", - "preferredOntologyIdentifier": null, - "synonym": [ - "UWS", - "vegetative state", - "VS" - ] -} diff --git a/instances/disease/williamsBeurenSyndrome.jsonld b/instances/disease/williamsBeurenSyndrome.jsonld deleted file mode 100644 index b5daa0846..000000000 --- a/instances/disease/williamsBeurenSyndrome.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/disease/williamsBeurenSyndrome", - "@type": "https://openminds.ebrains.eu/controlledTerms/Disease", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Williams-Beuren syndrome", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/DOID_1928", - "synonym": null -} diff --git a/instances/diseaseModel/alzheimersDiseaseModel.jsonld b/instances/diseaseModel/alzheimersDiseaseModel.jsonld deleted file mode 100644 index 2c8e33794..000000000 --- a/instances/diseaseModel/alzheimersDiseaseModel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/diseaseModel/alzheimersDiseaseModel", - "@type": "https://openminds.ebrains.eu/controlledTerms/DiseaseModel", - "definition": "An animal or cell displaying all or some of the pathological processes that are observed in the actual human or animal Alzheimer's disease.", - "description": "An animal or cell type model for Alzheimer's disease display all or some pathological processes that are observed in the actual disease in humans or animals, such as the formation of neurofibrillary tangles or amyloid-beta plaques.", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Alzheimer's disease model", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/diseaseModel/autismSpectrumDisorderModel.jsonld b/instances/diseaseModel/autismSpectrumDisorderModel.jsonld deleted file mode 100644 index 2553aed08..000000000 --- a/instances/diseaseModel/autismSpectrumDisorderModel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/diseaseModel/autismSpectrumDisorderModel", - "@type": "https://openminds.ebrains.eu/controlledTerms/DiseaseModel", - "definition": "An animal or cell displaying all or some of the pathological processes that are observed in the actual human or animal autism sprectrum disorder.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "autism spectrum disorder model", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/diseaseModel/epilepsyModel.jsonld b/instances/diseaseModel/epilepsyModel.jsonld deleted file mode 100644 index 5a1bc0949..000000000 --- a/instances/diseaseModel/epilepsyModel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/diseaseModel/epilepsyModel", - "@type": "https://openminds.ebrains.eu/controlledTerms/DiseaseModel", - "definition": "An animal or cell displaying all or some of the pathological processes that are observed for epilepsy in humans or animals.", - "description": "Epilepsy describes a group of central nervous system disorders characterized by recurrent unprovoked seizures. 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"knowledgeSpaceLink": null, - "name": "cell biology", - "preferredOntologyIdentifier": "http://uri.interlex.org/tgbugs/uris/readable/modality/Cellular", - "synonym": [ - "cellular approach" - ] -} diff --git a/instances/experimentalApproach/cellMorphology.jsonld b/instances/experimentalApproach/cellMorphology.jsonld deleted file mode 100644 index fd9488fc4..000000000 --- a/instances/experimentalApproach/cellMorphology.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/experimentalApproach/cellMorphology", - "@type": "https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach", - "definition": "Any experimental approach focused on the shape and structure of individual cells.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0739394", - "knowledgeSpaceLink": null, - "name": "cell morphology", - "preferredOntologyIdentifier": "http://uri.interlex.org/tgbugs/uris/readable/modality/CellMorphology", - 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It is the primary circulatory organ.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0732254", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000948#heart", - "name": "heart", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000948", - "synonym": [ - "chambered heart", - "vertebrate heart" - ] -} diff --git a/instances/organ/liver.jsonld b/instances/organ/liver.jsonld deleted file mode 100644 index 95a1d2459..000000000 --- a/instances/organ/liver.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organ/liver", - "@type": "https://openminds.ebrains.eu/controlledTerms/Organ", - "definition": "'Liver' is an organ that is part of the digestive system of vertebrate animals.", - "description": "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725629", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002107#liver", - "name": "liver", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002107", - "synonym": null -} diff --git a/instances/organ/muscle.jsonld b/instances/organ/muscle.jsonld deleted file mode 100644 index 66c3def13..000000000 --- a/instances/organ/muscle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organ/muscle", - "@type": "https://openminds.ebrains.eu/controlledTerms/Organ", - "definition": "'Muscle' is part of the musculoskeletal system.", - "description": "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107218", - "knowledgeSpaceLink": null, - "name": "muscle", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001630", - "synonym": null -} diff --git a/instances/organ/skin.jsonld b/instances/organ/skin.jsonld deleted file mode 100644 index e96757c85..000000000 --- a/instances/organ/skin.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organ/skin", - "@type": "https://openminds.ebrains.eu/controlledTerms/Organ", - "definition": "'Skin' is the organ covering the body that consists of the dermis and epidermis.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0727256", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002097#skin-of-body", - "name": "skin", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002097", - "synonym": [ - "entire skin", - "skin organ" - ] -} diff --git a/instances/organismSubstance/arterialBlood.jsonld b/instances/organismSubstance/arterialBlood.jsonld deleted file mode 100644 index 96860d6d1..000000000 --- a/instances/organismSubstance/arterialBlood.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSubstance/arterialBlood", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSubstance", - "definition": "'Arterial blood' is the oxygenated portion of blood which occupies the pulmonary vein, the left chambers of the heart, and the arteries of the circulatory system.", - "description": "Blood that flows through an artery.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0725460", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013755#arterial-blood", - "name": "arterial blood", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013755", - "synonym": [ - "arterial blood", - "blood in artery", - "portion of arterial blood" - ] -} diff --git a/instances/organismSubstance/blood.jsonld b/instances/organismSubstance/blood.jsonld deleted file mode 100644 index 96a7fa1cd..000000000 --- a/instances/organismSubstance/blood.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSubstance/blood", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSubstance", - "definition": "''Blood' is a body fluid in the circulatory system of vertebrates that transports substances to and from cells (e.g. nutrients, oxygen or metabolic waste products). [[adapted from Wikipedia](https://en.wikipedia.org/wiki/Blood)]", - "description": "A bodily fluid that is composed of blood plasma and erythrocytes (blood cells).", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101354", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000178#blood", - "name": "blood", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000178", - "synonym": [ - "portion of blood", - "vertebrate blood" - ] -} diff --git a/instances/organismSubstance/venousBlood.jsonld b/instances/organismSubstance/venousBlood.jsonld deleted file mode 100644 index 7f5ba08f6..000000000 --- a/instances/organismSubstance/venousBlood.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSubstance/venousBlood", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSubstance", - "definition": "'Venous blood' is deoxygenated blood which travels from the peripheral vessels, through the venous system into the right atrium of the heart.", - "description": "Blood that flows through a vein.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0734397", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0013756#venous-blood", - "name": "venous blood", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0013756", - "synonym": [ - "blood in vein", - "portion of venous blood", - "venous blood" - ] -} diff --git a/instances/organismSystem/cardiovascularSystem.jsonld b/instances/organismSystem/cardiovascularSystem.jsonld deleted file mode 100644 index 25656fab4..000000000 --- a/instances/organismSystem/cardiovascularSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/cardiovascularSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "'The 'cardiovascular system' is an anatomical organ system where the heart pumps blood through blood vessels to and from all parts of the body.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101670", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004535#cardiovascular-system", - "name": "cardiovascular system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004535", - "synonym": null -} diff --git a/instances/organismSystem/centralNervousSystem.jsonld b/instances/organismSystem/centralNervousSystem.jsonld deleted file mode 100644 index aa16738fd..000000000 --- a/instances/organismSystem/centralNervousSystem.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/centralNervousSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The 'central nervous system' is the main processing center in most organisms. 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"description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0102133", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0025595#cholinergic-system-1", - "name": "cholinergic system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002204http://purl.obolibrary.org/obo/UBERON_0025595", - "synonym": [ - "acetylcholine system","ach system","ACh system" - ] -} diff --git a/instances/organismSystem/digestiveSystem.jsonld b/instances/organismSystem/digestiveSystem.jsonld deleted file mode 100644 index 9627a404b..000000000 --- a/instances/organismSystem/digestiveSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/digestiveSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The 'digestive system' is an anatomical organ system composed of organs devoted to the ingestion, digestion, the assimilation of food and the discharge of residual wastes.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0729362", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001007#digestive-system", - "name": "digestive system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001007", - "synonym": null -} diff --git a/instances/organismSystem/gabaergicSystem.jsonld b/instances/organismSystem/gabaergicSystem.jsonld deleted file mode 100644 index fc319fefd..000000000 --- a/instances/organismSystem/gabaergicSystem.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/gabaergicSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The gabaergic system is composed of any molecule, protein, cell, tissue or organ that is related to GABA.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104506", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NLXANAT:1005024#gabaergic-system", - "name": "gabaergic system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025591", - "synonym": [ - "GABAergic system" - ] -} diff --git a/instances/organismSystem/glutamatergicSystem.jsonld b/instances/organismSystem/glutamatergicSystem.jsonld deleted file mode 100644 index 3dff329ec..000000000 --- a/instances/organismSystem/glutamatergicSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/glutamatergicSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The glutamatergic system is composed of any molecule, protein, cell, tissue or organ that is related to glutamate (when in the role of a neurotransmitter).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0104682", - "knowledgeSpaceLink": null, - "name": "glutamatergic system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025592", - "synonym": null -} diff --git a/instances/organismSystem/musculoskeletalSystem.jsonld b/instances/organismSystem/musculoskeletalSystem.jsonld deleted file mode 100644 index c939731d3..000000000 --- a/instances/organismSystem/musculoskeletalSystem.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/musculoskeletalSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The 'musculoskeletal system' is an anatomical organ system composed of organs providing the body with movement, stability, shape and support.", - "description": "The musculoskeletal system (sometimes also called locomotor system) is subdivided into two broader systems, the skeletal system and the muscular system. The skeletal system includes bones and joints. The muscular system includes all muscles in the body.", - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728294", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002204#musculoskeletal-system", - "name": "musculoskeletal system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002204", - "synonym": [ - "musculo-skeletal system" - ] -} diff --git a/instances/organismSystem/noradrenergicSystem.jsonld b/instances/organismSystem/noradrenergicSystem.jsonld deleted file mode 100644 index 53dbb2fbd..000000000 --- a/instances/organismSystem/noradrenergicSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/noradrenergicSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The noradrenergic system is composed of any molecule, protein, cell, tissue or organ that is related to norepinephrine (also known as noradrenaline).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107679", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/NLXANAT:1005027#noradrenergic-system", - "name": "noradrenergic system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0027225", - "synonym": null -} diff --git a/instances/organismSystem/serotonergicSystem.jsonld b/instances/organismSystem/serotonergicSystem.jsonld deleted file mode 100644 index 32760530f..000000000 --- a/instances/organismSystem/serotonergicSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/serotonergicSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The serotonergic system is composed of any molecule, protein, cell, tissue or organ that is related to serotonin.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110555", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0025593#serotonergic-system-1", - "name": "serotonergic system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0025593", - "synonym":["serotonin system","5HT system","5-HT system","5-ht system", "5ht system"] -} diff --git a/instances/organismSystem/vascularSystem.jsonld b/instances/organismSystem/vascularSystem.jsonld deleted file mode 100644 index 3d4d66352..000000000 --- a/instances/organismSystem/vascularSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/organismSystem/vascularSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/OrganismSystem", - "definition": "The 'vascular system' is an anatomical system that consists of all vessels in the body, and carries blood and lymph through all parts of the body.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0726589", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007798#vascular-system", - "name": "vascular system", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007798", - "synonym": null -} diff --git a/instances/patchClampVariation/cellAttachedPatch.jsonld b/instances/patchClampVariation/cellAttachedPatch.jsonld deleted file mode 100644 index 2edb166b1..000000000 --- a/instances/patchClampVariation/cellAttachedPatch.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/patchClampVariation/cellAttachedPatch", - "@type": "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation", - "definition": "A variation of the patch-clamp technique in which the cell membrane remains intact.", - "description": "For this method, the pipette is sealed onto the cell membrane to obtain a gigaseal (a seal with electrical resistance on the order of a gigaohm), while ensuring that the cell membrane remains intact. 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[Wikipedia]", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "cell-attached patch", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/patchClampVariation/insideOutPatch.jsonld b/instances/patchClampVariation/insideOutPatch.jsonld deleted file mode 100644 index 87363ad1b..000000000 --- a/instances/patchClampVariation/insideOutPatch.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/patchClampVariation/insideOutPatch", - "@type": "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation", - "definition": "A variation of the patch-clamp technique in which a patch of membrane is excised and the cytosolic surface exposed.", - "description": "In the inside-out method, a patch of the membrane is attached to the patch pipette, detached from the rest of the cell, and the cytosolic surface of the membrane is exposed to the external media, or bath. One advantage of this method is that the experimenter has access to the intracellular surface of the membrane via the bath and can change the chemical composition of what the inside surface of the membrane is exposed to. This is useful when an experimenter wishes to manipulate the environment at the intracellular surface of single ion channels. [Wikipedia]", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "inside-out patch", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/patchClampVariation/loosePatch.jsonld b/instances/patchClampVariation/loosePatch.jsonld deleted file mode 100644 index e80cfad3d..000000000 --- a/instances/patchClampVariation/loosePatch.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/patchClampVariation/loosePatch", - "@type": "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation", - "definition": "A variation of the patch-clamp technique involving a seal with low electrical resistance.", - "description": "This technique employs a loose seal (low electrical resistance) rather than the tight gigaseal used in the conventional technique. 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[Wikipedia]", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "loose patch", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/patchClampVariation/outsideOutPatch.jsonld b/instances/patchClampVariation/outsideOutPatch.jsonld deleted file mode 100644 index c6b52d4ba..000000000 --- a/instances/patchClampVariation/outsideOutPatch.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/patchClampVariation/outsideOutPatch", - "@type": "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation", - "definition": "A variation of the patch-clamp technique in which a patch of membrane is excised and the external surface exposed.", - "description": "The name 'outside-out' emphasizes both this technique's complementar­ity to the inside-out technique, and the fact that it places the external rather than intracellular surface of the cell membrane on the outside of the patch of membrane, in relation to the patch electrode. 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[Wikipedia]", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "outside-out patch", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/patchClampVariation/perforatedPatch.jsonld b/instances/patchClampVariation/perforatedPatch.jsonld deleted file mode 100644 index a40f0d3a8..000000000 --- a/instances/patchClampVariation/perforatedPatch.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/patchClampVariation/perforatedPatch", - "@type": "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation", - "definition": "A variation of the patch-clamp technique in which the cell membrane is perforated.", - "description": "This variation of the patch clamp method is very similar to the whole-cell configuration. The main difference lies in the fact that when the experimenter forms the gigaohm seal, suction is not used to rupture the patch membrane. Instead, the electrode solution contains small amounts of an antifungal or antibiotic agent which diffuses into the membrane patch and forms small pores in the membrane, providing electrical access to the cell interior. 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"knowledgeSpaceLink": null, - "name": "time series data types", - "preferredOntologyIdentifier": "https://www.wikidata.org/wiki/Q186588", - "synonym": null -} diff --git a/instances/softwareFeature/vectorImageDataTypes.jsonld b/instances/softwareFeature/vectorImageDataTypes.jsonld deleted file mode 100644 index c19984284..000000000 --- a/instances/softwareFeature/vectorImageDataTypes.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/softwareFeature/vectorImageDataTypes", - "@type": "https://openminds.ebrains.eu/controlledTerms/SoftwareFeature", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "vector image data types", - "preferredOntologyIdentifier": "https://www.wikidata.org/wiki/Q170130", - "synonym": null -} diff --git a/instances/softwareFeature/virtualReality.jsonld b/instances/softwareFeature/virtualReality.jsonld deleted file mode 100644 index 7932ffe51..000000000 --- a/instances/softwareFeature/virtualReality.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Berghia stephanieae", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_1287507", - "synonym": [ - "aeolidiella stephanieae" - ] -} diff --git a/instances/species/callithrixJacchus.jsonld b/instances/species/callithrixJacchus.jsonld deleted file mode 100644 index 06c9779b0..000000000 --- a/instances/species/callithrixJacchus.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/callithrixJacchus", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Callithrix jacchus* (common marmoset) belongs to the family of *callitrichidae* (new world monkeys).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Callithrix jacchus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_9483", - "synonym": [ - "callithrix jacchus jacchus", - "common marmoset", - "white ear-tufted marmoset", - "white-tufted-ear marmoset" - ] -} diff --git a/instances/species/chlorocebusAethiopsSabaeus.jsonld b/instances/species/chlorocebusAethiopsSabaeus.jsonld deleted file mode 100644 index 88f03b8f6..000000000 --- a/instances/species/chlorocebusAethiopsSabaeus.jsonld +++ /dev/null @@ -1,22 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/chlorocebusAethiopsSabaeus", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Chlorocebus aethiops sabaeus* (green monkey) belongs to the family of *cercopithecidae* (old world monkeys).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Chlorocebus aethiops sabaeus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_60711", - "synonym": [ - "cercopithecus aethiops sabaeus", - "cercopithecus sabaeus", - "cercopithecus sabeus", - "chlorocebus aethiops sabeus", - "chlorocebus sabaeus", - "chlorocebus sabeus", - "green monkey" - ] -} diff --git a/instances/species/chlorocebusPygerythrus.jsonld b/instances/species/chlorocebusPygerythrus.jsonld deleted file mode 100644 index 6a1818d8f..000000000 --- a/instances/species/chlorocebusPygerythrus.jsonld +++ /dev/null @@ -1,21 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/chlorocebusPygerythrus", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Chlorocebus pygerythrus* (vervet marmoset) belongs to the family of *cercopithecidae* (old world monkeys).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Chlorocebus pygerythrus", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_60710", - "synonym": [ - "cercopithecus aethiops pygerythrus", - 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"definition": "The species *Macaca mulatta* (rhesus macaque) belongs to the family of *cercopithecidae* (old world monkeys).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0110118", - "knowledgeSpaceLink": null, - "name": "Macaca mulatta", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_9544", - "synonym": [ - "rhesus macaque", - "rhesus monkey" - ] -} diff --git a/instances/species/monodelphisDomestica.jsonld b/instances/species/monodelphisDomestica.jsonld deleted file mode 100644 index 56b49d64c..000000000 --- a/instances/species/monodelphisDomestica.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/monodelphisDomestica", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Monodelphis domestica* (gray short-tailed opossum) belongs to the family of *didelphidae* (American possums).", - 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"synonym": [ - "house mouse", - "mouse" - ] -} diff --git a/instances/species/mustelaPutorius.jsonld b/instances/species/mustelaPutorius.jsonld deleted file mode 100644 index 9588584bf..000000000 --- a/instances/species/mustelaPutorius.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/mustelaPutorius", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Mustela putorius* (European polecat) belongs to the family of *mustelidae* (mustelids).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Mustela putorius", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_9668", - "synonym": [ - "european polecat", - "putorius putorius" - ] -} diff --git a/instances/species/mustelaPutoriusFuro.jsonld b/instances/species/mustelaPutoriusFuro.jsonld deleted file mode 100644 index fdff87075..000000000 --- a/instances/species/mustelaPutoriusFuro.jsonld +++ /dev/null @@ -1,19 +0,0 @@ -{ - 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"@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Ovis aries* (domestic sheep) belongs to the family of bovidae (bovids).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "Ovis aries", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/NCBITaxon_9940", - "synonym": [ - "domestic sheep", - "sheep" - ] -} diff --git a/instances/species/rattusNorvegicus.jsonld b/instances/species/rattusNorvegicus.jsonld deleted file mode 100644 index ecfa736ed..000000000 --- a/instances/species/rattusNorvegicus.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/species/rattusNorvegicus", - "@type": "https://openminds.ebrains.eu/controlledTerms/Species", - "definition": "The species *Rattus norvegicus* (brown rat) belongs to the family of *muridae* (murids).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0109658", - 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Spines are specialised subcellular compartments involved in the synaptic transmission.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0103030", - "knowledgeSpaceLink": null, - "name": "dendritic spine", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao1799103720", - "synonym": null -} diff --git a/instances/subcellularEntity/mitochondrion.jsonld b/instances/subcellularEntity/mitochondrion.jsonld deleted file mode 100644 index 388b94694..000000000 --- a/instances/subcellularEntity/mitochondrion.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/mitochondrion", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'mitochondrion' is a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration (Gene Ontology).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107028", - "knowledgeSpaceLink": null, - "name": "mitochondrion", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao1860313010", - "synonym": null -} diff --git a/instances/subcellularEntity/nerveFiber.jsonld b/instances/subcellularEntity/nerveFiber.jsonld deleted file mode 100644 index d1dd41272..000000000 --- a/instances/subcellularEntity/nerveFiber.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/nerveFiber", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A threadlike extension of a nerve cell within the nervous system which consists of an axon and, if myelinated, a myelin sheath.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0485634", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0006134#nerve-fiber", - "name": "nerve fiber", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0006134", - "synonym": [ - "neurofibra", - "neurofibrum" - ] -} diff --git a/instances/subcellularEntity/neurite.jsonld b/instances/subcellularEntity/neurite.jsonld deleted file mode 100644 index 0d008aeac..000000000 --- a/instances/subcellularEntity/neurite.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/neurite", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'neurite' is a small neuronal process on developing neurons that ultimately grow out into axons or dendrites under the control of growth stimulating or inhibiting factors from their direct extracellular environment.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "neurite", - "preferredOntologyIdentifier": null, - "synonym": [ - "neurite outgrowth", - "neuronal process" - ] -} diff --git a/instances/subcellularEntity/neurofilament.jsonld b/instances/subcellularEntity/neurofilament.jsonld deleted file mode 100644 index 31ceae85a..000000000 --- a/instances/subcellularEntity/neurofilament.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/neurofilament", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'neurofilament' is a type of intermediate filament found in the core of neuronal axons. Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107475", - "knowledgeSpaceLink": null, - "name": "neurofilament", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao1316272517", - "synonym": [ - "type IV intermediate filament" - ] -} diff --git a/instances/subcellularEntity/nucleus.jsonld b/instances/subcellularEntity/nucleus.jsonld deleted file mode 100644 index 5518415d0..000000000 --- a/instances/subcellularEntity/nucleus.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/nucleus", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'nucleus' is a membrane-bounded organelle of eukaryotic cells that contains the chromosomes. It is the primary site of DNA replication and RNA synthesis in the cell (Gene Ontology)", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107735", - "knowledgeSpaceLink": null, - "name": "nucleus", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao1702920020", - "synonym": [ - "cell nucleus" - ] -} diff --git a/instances/subcellularEntity/symmetricSynapse.jsonld b/instances/subcellularEntity/symmetricSynapse.jsonld deleted file mode 100644 index 6bb8b4993..000000000 --- a/instances/subcellularEntity/symmetricSynapse.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/symmetricSynapse", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'symmetric synapse' has flattened or elongated vesicles, and does not contain a prominent postsynaptic density. Symmetric synapses are typically inhibitory.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "symmetric synapse", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subcellularEntity/synapticBouton.jsonld b/instances/subcellularEntity/synapticBouton.jsonld deleted file mode 100644 index 9955dd278..000000000 --- a/instances/subcellularEntity/synapticBouton.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/synapticBouton", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'synaptic bouton' is a terminal pre-synaptic ending of an axon or axon collateral.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111400", - "knowledgeSpaceLink": null, - "name": "synaptic bouton", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao187426937", - "synonym": [ - "pre-synaptic bouton" - ] -} diff --git a/instances/subcellularEntity/synapticProtein.jsonld b/instances/subcellularEntity/synapticProtein.jsonld deleted file mode 100644 index 71ac9ca11..000000000 --- a/instances/subcellularEntity/synapticProtein.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/synapticProtein", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'synaptic protein' belongs to a family of neuron-specific phosphoric proteins associated with synaptic vesicles. Synaptic proteins are present on the surface of almost all synaptic particles and bind to the cytoskeleton.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111412", - "knowledgeSpaceLink": null, - "name": "synaptic protein", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao936599761", - "synonym": [ - "synaptic vesicle associated protein" - ] -} diff --git a/instances/subcellularEntity/synapticVesicle.jsonld b/instances/subcellularEntity/synapticVesicle.jsonld deleted file mode 100644 index 16ccb79e2..000000000 --- a/instances/subcellularEntity/synapticVesicle.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subcellularEntity/synapticVesicle", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubcellularEntity", - "definition": "A 'synaptic vesicle' is a secretory organelle (~ 50 nm in diameter) released from the pre-synaptic nerve terminal. It accumulates high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the pre-synaptic plasma membrane (modified from Gene Ontology).", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111411", - "knowledgeSpaceLink": null, - "name": "synaptic vesicle", - "preferredOntologyIdentifier": "http://uri.neuinfo.org/nif/nifstd/sao1071221672", - "synonym": null -} diff --git a/instances/subjectAttribute/alert.jsonld b/instances/subjectAttribute/alert.jsonld deleted file mode 100644 index 0a199e448..000000000 --- a/instances/subjectAttribute/alert.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/alert", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A temporary state of an organism in which it can quickly perceive and act.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "alert", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/alive.jsonld b/instances/subjectAttribute/alive.jsonld deleted file mode 100644 index 249bf3608..000000000 --- a/instances/subjectAttribute/alive.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/alive", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that is not dead.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "alive", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/anaesthetized.jsonld b/instances/subjectAttribute/anaesthetized.jsonld deleted file mode 100644 index 48d5768b7..000000000 --- a/instances/subjectAttribute/anaesthetized.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/anaesthetized", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A temporary state of an organism induced by anaestetic substances that cause the reduction or loss of pain sensation with or without loss of consciousness.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "anaesthetized", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/asleep.jsonld b/instances/subjectAttribute/asleep.jsonld deleted file mode 100644 index 87e03f449..000000000 --- a/instances/subjectAttribute/asleep.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/asleep", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A periodic, readily reversible state of an organism with reduced awareness and typically lower metabolic activity.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "asleep", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/awake.jsonld b/instances/subjectAttribute/awake.jsonld deleted file mode 100644 index cc32f588f..000000000 --- a/instances/subjectAttribute/awake.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/awake", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A temporary state of an organism in which it is fully alert and aware.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "awake", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/comatose.jsonld b/instances/subjectAttribute/comatose.jsonld deleted file mode 100644 index 070bdadf2..000000000 --- a/instances/subjectAttribute/comatose.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/comatose", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A deep state of prolonged unconsciousness in which the organism cannot be awakened (temporarily or terminally), is unresponsive and typically displays depressed cerebral activity.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "comatose", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/control.jsonld b/instances/subjectAttribute/control.jsonld deleted file mode 100644 index 75623f80e..000000000 --- a/instances/subjectAttribute/control.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/control", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that is part of a study and does not receive the treatment being tested.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "control", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/deceased.jsonld b/instances/subjectAttribute/deceased.jsonld deleted file mode 100644 index 6409300cf..000000000 --- a/instances/subjectAttribute/deceased.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/deceased", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that is no longer living.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "deceased", - "preferredOntologyIdentifier": null, - "synonym": [ - "dead" - ] -} diff --git a/instances/subjectAttribute/drugged.jsonld b/instances/subjectAttribute/drugged.jsonld deleted file mode 100644 index 0f5568c28..000000000 --- a/instances/subjectAttribute/drugged.jsonld +++ /dev/null @@ -1,17 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/drugged", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A temporary state of an organism in which it is under the influence of a sedative, narcotic or any other typye of drug.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "drugged", - "preferredOntologyIdentifier": null, - "synonym": [ - "dosed", - "drug treated" - ] -} diff --git a/instances/subjectAttribute/freelyMoving.jsonld b/instances/subjectAttribute/freelyMoving.jsonld deleted file mode 100644 index 2f869a26a..000000000 --- a/instances/subjectAttribute/freelyMoving.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/freelyMoving", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that can move easily, without any obstacles or resistance.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "freely moving", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/hasImplantedDevice.jsonld b/instances/subjectAttribute/hasImplantedDevice.jsonld deleted file mode 100644 index bf917b782..000000000 --- a/instances/subjectAttribute/hasImplantedDevice.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/hasImplantedDevice", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A typically chronic state of an organism after surgical implantation of a device (e.g., an electrode, a pacemaker) to measure or stimulate bodily functions.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "has implanted device", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/hasInsertedDevice.jsonld b/instances/subjectAttribute/hasInsertedDevice.jsonld deleted file mode 100644 index 15b521cd3..000000000 --- a/instances/subjectAttribute/hasInsertedDevice.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/hasInsertedDevice", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A typically temporary state of an organism during which a device (e.g., an electrode) is inserted to measure or stimulate bodily functions.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "has inserted device", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/headRestrained.jsonld b/instances/subjectAttribute/headRestrained.jsonld deleted file mode 100644 index 463802da7..000000000 --- a/instances/subjectAttribute/headRestrained.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/headRestrained", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that has been restrained on the head causing e.g., decreased motion range and/or increased resistance in movement.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "head restrained", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/healthy.jsonld b/instances/subjectAttribute/healthy.jsonld deleted file mode 100644 index 5963abd93..000000000 --- a/instances/subjectAttribute/healthy.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/healthy", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "A 'healthy subject' is an individual with no known significant health-related issues. What passes as not-significant health-related issue is defined by the experimental study the individual participates in.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "healthy", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/subjectAttribute/knockin.jsonld b/instances/subjectAttribute/knockin.jsonld deleted file mode 100644 index d2f9c3bfd..000000000 --- a/instances/subjectAttribute/knockin.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/subjectAttribute/knockin", - "@type": "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute", - "definition": "An organism that underwent a targeted insertation of foreign genetic material in the existing genetic material (i.e. a gene).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "knockin", - "preferredOntologyIdentifier": null, - 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"name": "experimental approach", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/fileBundleGrouping.jsonld b/instances/terminology/fileBundleGrouping.jsonld deleted file mode 100644 index f4cbc8c02..000000000 --- a/instances/terminology/fileBundleGrouping.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/fileBundleGrouping", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "file bundle grouping", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/fileRepositoryType.jsonld b/instances/terminology/fileRepositoryType.jsonld deleted file mode 100644 index 901c207b2..000000000 --- a/instances/terminology/fileRepositoryType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/measuredSignalType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "measured signal type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/metaDataModelType.jsonld b/instances/terminology/metaDataModelType.jsonld deleted file mode 100644 index 64580735e..000000000 --- a/instances/terminology/metaDataModelType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/metaDataModelType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "(meta)data model type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/modelAbstractionLevel.jsonld b/instances/terminology/modelAbstractionLevel.jsonld deleted file mode 100644 index b0cd7e095..000000000 --- a/instances/terminology/modelAbstractionLevel.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/modelAbstractionLevel", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "model abstraction level", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/modelScope.jsonld b/instances/terminology/modelScope.jsonld deleted file mode 100644 index 595e8c9e8..000000000 --- a/instances/terminology/modelScope.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/modelScope", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "model scope", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/molecularEntity.jsonld b/instances/terminology/molecularEntity.jsonld deleted file mode 100644 index 4a29a8184..000000000 --- a/instances/terminology/molecularEntity.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/molecularEntity", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107064", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/CHEBI:23367#molecular-entity", - "name": "molecular entity", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/CHEBI_23367", - "synonym": null -} diff --git a/instances/terminology/olfactoryStimulusType.jsonld b/instances/terminology/olfactoryStimulusType.jsonld deleted file mode 100644 index c9dbb70eb..000000000 --- a/instances/terminology/olfactoryStimulusType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/olfactoryStimulusType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "An 'olfactory stimulus type' groups similar olfactory stimuli used across olfactory stimulation techniques.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "olfactory stimulus type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/operatingDevice.jsonld b/instances/terminology/operatingDevice.jsonld deleted file mode 100644 index 2a559efec..000000000 --- a/instances/terminology/operatingDevice.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/operatingDevice", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "operating device", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/operatingSystem.jsonld b/instances/terminology/operatingSystem.jsonld deleted file mode 100644 index ae46e2362..000000000 --- a/instances/terminology/operatingSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/operatingSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "operating system", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/opticalStimulusType.jsonld b/instances/terminology/opticalStimulusType.jsonld deleted file mode 100644 index 755e0bb6f..000000000 --- a/instances/terminology/opticalStimulusType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/opticalStimulusType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "An 'optical stimulus type' groups similar optical stimuli used across optical stimulation techniques.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "optical stimulus type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/organ.jsonld b/instances/terminology/organ.jsonld deleted file mode 100644 index c277778d2..000000000 --- a/instances/terminology/organ.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/organ", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "Anatomical structure that performs a specific function or group of functions.", - "description": "The preferred ontology for 'organ' is UBERON.", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "organ", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000062", - "synonym": null -} diff --git a/instances/terminology/organismSubstance.jsonld b/instances/terminology/organismSubstance.jsonld deleted file mode 100644 index ebb44d188..000000000 --- a/instances/terminology/organismSubstance.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/organismSubstance", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "Any material anatomical entity in a gaseous, liquid, semisolid or solid state produced by or derived from an organism or parts of an organism.", - "description": "The preferred ontology for 'organism substance' is UBERON.", - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "organism substance", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/organismSystem.jsonld b/instances/terminology/organismSystem.jsonld deleted file mode 100644 index d8c531e0c..000000000 --- a/instances/terminology/organismSystem.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/organismSystem", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "Any anatomical or functional system in an organism, regardless of scale.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "organism system", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/patchClampVariation.jsonld b/instances/terminology/patchClampVariation.jsonld deleted file mode 100644 index f0a80d044..000000000 --- a/instances/terminology/patchClampVariation.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/patchClampVariation", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "A variation of the patch clamp technique", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "patch clamp variation", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/preparationType.jsonld b/instances/terminology/preparationType.jsonld deleted file mode 100644 index 9e5abad58..000000000 --- a/instances/terminology/preparationType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/preparationType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "preparation type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/productAccessibility.jsonld b/instances/terminology/productAccessibility.jsonld deleted file mode 100644 index 626d66389..000000000 --- a/instances/terminology/productAccessibility.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/productAccessibility", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "product accessibility", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/programmingLanguage.jsonld b/instances/terminology/programmingLanguage.jsonld deleted file mode 100644 index b1ec1f818..000000000 --- a/instances/terminology/programmingLanguage.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/programmingLanguage", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "programming language", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/qualitativeOverlap.jsonld b/instances/terminology/qualitativeOverlap.jsonld deleted file mode 100644 index 76e779c6b..000000000 --- a/instances/terminology/qualitativeOverlap.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/qualitativeOverlap", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "qualitative overlap", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/semanticDataType.jsonld b/instances/terminology/semanticDataType.jsonld deleted file mode 100644 index 3f4cebea8..000000000 --- a/instances/terminology/semanticDataType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/semanticDataType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "semantic data type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/service.jsonld b/instances/terminology/service.jsonld deleted file mode 100644 index dd99755e0..000000000 --- a/instances/terminology/service.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/service", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "service", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/setupType.jsonld b/instances/terminology/setupType.jsonld deleted file mode 100644 index 4f4833953..000000000 --- a/instances/terminology/setupType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/setupType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "The setup type describes the overall purpose of arranging equipment in a certain way (setup).", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "setup type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/softwareApplicationCategory.jsonld b/instances/terminology/softwareApplicationCategory.jsonld deleted file mode 100644 index 2332b66e4..000000000 --- a/instances/terminology/softwareApplicationCategory.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/softwareApplicationCategory", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "software application category", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/softwareFeature.jsonld b/instances/terminology/softwareFeature.jsonld deleted file mode 100644 index 116f96a87..000000000 --- a/instances/terminology/softwareFeature.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/softwareFeature", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "software feature", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/species.jsonld b/instances/terminology/species.jsonld deleted file mode 100644 index 9cefd5221..000000000 --- a/instances/terminology/species.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/species", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "species", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/stimulationApproach.jsonld b/instances/terminology/stimulationApproach.jsonld deleted file mode 100644 index db64147b4..000000000 --- a/instances/terminology/stimulationApproach.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/stimulationApproach", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "stimulation approach", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/stimulationTechnique.jsonld b/instances/terminology/stimulationTechnique.jsonld deleted file mode 100644 index 479dd7b21..000000000 --- a/instances/terminology/stimulationTechnique.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/stimulationTechnique", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "stimulation technique", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/subcellularEntity.jsonld b/instances/terminology/subcellularEntity.jsonld deleted file mode 100644 index fa3ad897a..000000000 --- a/instances/terminology/subcellularEntity.jsonld +++ /dev/null @@ -1,16 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/subcellularEntity", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "Entity derived from a cell or cells. The anatomical scale of these objects roughly corresponds to that which would be visible in high resolution light microscopy or conventional electron microscopy, e.g., nanometers to microns", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/base/ilx_0111157", - "knowledgeSpaceLink": "https://knowledge-space.org/wiki/GO:0005575#iJ6UjX8BxpaxvvQA_2ri", - "name": "subcellular entity", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/GO_0005575", - "synonym": [ - "cellular component" - ] -} diff --git a/instances/terminology/subjectAttribute.jsonld b/instances/terminology/subjectAttribute.jsonld deleted file mode 100644 index e70eef3c0..000000000 --- a/instances/terminology/subjectAttribute.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/subjectAttribute", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "subject attribute", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/tactileStimulusType.jsonld b/instances/terminology/tactileStimulusType.jsonld deleted file mode 100644 index 552625172..000000000 --- a/instances/terminology/tactileStimulusType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/tactileStimulusType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "A 'tactile stimulus type' groups similar tactile stimuli used across tactile stimulation techniques.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "tactile stimulus type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/technique.jsonld b/instances/terminology/technique.jsonld deleted file mode 100644 index 3573b4674..000000000 --- a/instances/terminology/technique.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/technique", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "technique", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/tissueSampleAttribute.jsonld b/instances/terminology/tissueSampleAttribute.jsonld deleted file mode 100644 index b8430adea..000000000 --- a/instances/terminology/tissueSampleAttribute.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/tissueSampleAttribute", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "tissue sample attribute", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/tissueSampleType.jsonld b/instances/terminology/tissueSampleType.jsonld deleted file mode 100644 index 9be007ec4..000000000 --- a/instances/terminology/tissueSampleType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/tissueSampleType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "tissue sample type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/typeOfUncertainty.jsonld b/instances/terminology/typeOfUncertainty.jsonld deleted file mode 100644 index 5eb295e93..000000000 --- a/instances/terminology/typeOfUncertainty.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/typeOfUncertainty", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "type of uncertainty", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/unitOfMeasurement.jsonld b/instances/terminology/unitOfMeasurement.jsonld deleted file mode 100644 index 4bc2318f7..000000000 --- a/instances/terminology/unitOfMeasurement.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/unitOfMeasurement", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "unit of measurement", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/terminology/visualStimulusType.jsonld b/instances/terminology/visualStimulusType.jsonld deleted file mode 100644 index 11b10a235..000000000 --- a/instances/terminology/visualStimulusType.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/terminology/visualStimulusType", - "@type": "https://openminds.ebrains.eu/controlledTerms/Terminology", - "definition": "A 'visual stimulus type' groups similar visual stimuli used across visual stimulation techniques.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "visual stimulus type", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleAttribute/fixated.jsonld b/instances/tissueSampleAttribute/fixated.jsonld deleted file mode 100644 index af3e37d7f..000000000 --- a/instances/tissueSampleAttribute/fixated.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/tissueSampleAttribute/fixated", - "@type": "https://openminds.ebrains.eu/controlledTerms/TissueSampleAttribute", - "definition": "A specimen that was treated with a fixative (e.g., paraformaldehyde) to preserve its existing form and structure.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "fixated", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleAttribute/freeFloating.jsonld b/instances/tissueSampleAttribute/freeFloating.jsonld deleted file mode 100644 index 1b474517c..000000000 --- a/instances/tissueSampleAttribute/freeFloating.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/tissueSampleAttribute/freeFloating", - "@type": "https://openminds.ebrains.eu/controlledTerms/TissueSampleAttribute", - 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"interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "untreated", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleType/biopsySample.jsonld b/instances/tissueSampleType/biopsySample.jsonld deleted file mode 100644 index 84fe17441..000000000 --- a/instances/tissueSampleType/biopsySample.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/tissueSampleType/biopsySample", - "@type": "https://openminds.ebrains.eu/controlledTerms/TissueSampleType", - "definition": "Typically very small sample of tissue that was excised from a living or deceased multicellular organism body.", - "description": null, - "interlexIdentifier": "http://uri.interlex.org/ilx_0782394", - "knowledgeSpaceLink": null, - "name": "biopsy sample", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/OBI_0002650", - "synonym": null -} diff --git a/instances/tissueSampleType/fluidSpecimen.jsonld b/instances/tissueSampleType/fluidSpecimen.jsonld deleted file mode 100644 index 77c9f9399..000000000 --- a/instances/tissueSampleType/fluidSpecimen.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"definition": "One of the symmetric halves excised from a bilateral organ tissue sample (e.g., a brain) from a living or deceased multicellular organism body.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "hemisphere", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleType/heterogeneousCellPopulation.jsonld b/instances/tissueSampleType/heterogeneousCellPopulation.jsonld deleted file mode 100644 index 033949767..000000000 --- a/instances/tissueSampleType/heterogeneousCellPopulation.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/tissueSampleType/heterogeneousCellPopulation", - "@type": "https://openminds.ebrains.eu/controlledTerms/TissueSampleType", - "definition": "A sample of multiple cells/a population of cells that are of two or more different cell types.", - "description": null, - 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"description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "single cell", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleType/tissueBlock.jsonld b/instances/tissueSampleType/tissueBlock.jsonld deleted file mode 100644 index 2e82be3fb..000000000 --- a/instances/tissueSampleType/tissueBlock.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/tissueSampleType/tissueBlock", - "@type": "https://openminds.ebrains.eu/controlledTerms/TissueSampleType", - "definition": "A cube-like sample of tissue that was excised from a larger tissue sample (e.g., a whole organ) from a living or deceased multicellular organism body.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "tissue block", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/tissueSampleType/tissueSlice.jsonld b/instances/tissueSampleType/tissueSlice.jsonld deleted file mode 100644 index 8490405f2..000000000 --- a/instances/tissueSampleType/tissueSlice.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"definition": "A whole organ sample from a living or deceased multicellular organism body.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "whole organ", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/typeOfUncertainty/standardDeviation.jsonld b/instances/typeOfUncertainty/standardDeviation.jsonld deleted file mode 100644 index 0d3e07aed..000000000 --- a/instances/typeOfUncertainty/standardDeviation.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/typeOfUncertainty/standardDeviation", - "@type": "https://openminds.ebrains.eu/controlledTerms/TypeOfUncertainty", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "standard deviation", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/typeOfUncertainty/standardError.jsonld b/instances/typeOfUncertainty/standardError.jsonld deleted file mode 100644 index 2fcd543fb..000000000 --- a/instances/typeOfUncertainty/standardError.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"@type": "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "byte", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/unitOfMeasurement/centimeter.jsonld b/instances/unitOfMeasurement/centimeter.jsonld deleted file mode 100644 index 1b24b424d..000000000 --- a/instances/unitOfMeasurement/centimeter.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/unitOfMeasurement/centimeter", - "@type": "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement", - "definition": null, - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "centimeter", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UO_0000015", - "synonym": null -} diff --git a/instances/unitOfMeasurement/coreHour.jsonld b/instances/unitOfMeasurement/coreHour.jsonld deleted file mode 100644 index e9061df4b..000000000 --- a/instances/unitOfMeasurement/coreHour.jsonld +++ /dev/null @@ -1,14 +0,0 @@ -{ - 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"name": "day", - "preferredOntologyIdentifier": null, - "synonym": null -} diff --git a/instances/unitOfMeasurement/degreeCelsius.jsonld b/instances/unitOfMeasurement/degreeCelsius.jsonld deleted file mode 100644 index 1216cf53b..000000000 --- a/instances/unitOfMeasurement/degreeCelsius.jsonld +++ /dev/null @@ -1,18 +0,0 @@ -{ - "@context": { - "@vocab": "https://openminds.ebrains.eu/vocab/" - }, - "@id": "https://openminds.ebrains.eu/instances/unitOfMeasurement/degreeCelsius", - "@type": "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement", - "definition": "The 'degree Celsius' is a unit of temperature on the Celsius scale where the freezing point of water is at 0 °C and the boiling point of water is at 100 °C under standard atmospheric pressure.", - "description": null, - "interlexIdentifier": null, - "knowledgeSpaceLink": null, - "name": "degree Celsius", - "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UO_0000027", - "synonym": [ - "Celsius", - "degree", - 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