-
Notifications
You must be signed in to change notification settings - Fork 0
/
OpenScan.cpp
1014 lines (876 loc) · 33.4 KB
/
OpenScan.cpp
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
#include "OpenScan.h"
#include "ModuleInterface.h"
#include <algorithm>
#include <cstdio>
#include <cstring>
#include <iterator>
#include <set>
#include <sstream>
#include <utility>
// External names used by the rest of the system
// to load particular device from the "OpenScan.dll" library
const char *const DEVICE_NAME_Hub = "OScHub";
const char *const DEVICE_NAME_Camera = "OSc-LSM";
const char *const DEVICE_NAME_Magnifier = "OSc-Magnifier";
const char *const PROPERTY_Clock = "Clock";
const char *const PROPERTY_Scanner = "Scanner";
const char *const PROPERTY_Detector_Prefix = "Detector-";
const char *const PROPERTY_EnableDetector_Prefix = "LSM-EnableDetector-";
const char *const PROPERTY_Resolution = "Resolution";
const char *const PROPERTY_Magnification = "Magnification";
const char *const VALUE_Yes = "Yes";
const char *const VALUE_No = "No";
const char *const VALUE_Unselected = "Unselected";
const std::size_t MAX_DETECTOR_DEVICES = 4;
const int MIN_ADHOC_ERROR_CODE = 60001;
const int MAX_ADHOC_ERROR_CODE = 70000;
MODULE_API void InitializeModuleData() {
if (!OSc_CheckVersion()) {
// Unfortunately we have no way of logging the error here.
// We could wait until the hub Initialize() is called, but that would
// require complicating the constructor code with conditionals.
// Instead, for now we create an empty device to report the error.
RegisterDevice("Error", MM::GenericDevice,
"Incompatible OpenScanLib version");
return;
}
RegisterDevice(DEVICE_NAME_Hub, MM::HubDevice,
"OpenScan Laser Scanning System");
}
MODULE_API MM::Device *CreateDevice(const char *deviceName) {
if (std::string(deviceName) == DEVICE_NAME_Camera)
return new OpenScan();
else if (std::string(deviceName) == DEVICE_NAME_Magnifier)
return new OpenScanMagnifier();
else if (std::string(deviceName) == DEVICE_NAME_Hub)
return new OpenScanHub();
return 0;
}
MODULE_API void DeleteDevice(MM::Device *device) { delete device; }
OpenScan::OpenScan()
: nextAdHocErrorCode_(MIN_ADHOC_ERROR_CODE), oscLSM_(0), acqTemplate_(0),
sequenceAcquisition_(0), sequenceAcquisitionStopOnOverflow_(false) {
const char *paths[] = {".", NULL};
OSc_SetDeviceModuleSearchPaths(paths);
size_t count;
if (OSc_GetNumberOfAvailableDevices(&count) != OSc_OK)
return;
OSc_Device **devices;
if (OSc_GetAllDevices(&devices, &count) != OSc_OK)
return;
for (size_t i = 0; i < count; ++i) {
OSc_Device *device = devices[i];
const char *name = NULL;
if (OSc_Device_GetDisplayName(device, &name) != OSc_OK || !name ||
!name[0])
continue;
bool flag = false;
if (OSc_Device_HasClock(device, &flag) == OSc_OK && flag)
clockDevices_[name] = device;
if (OSc_Device_HasScanner(device, &flag) == OSc_OK && flag)
scannerDevices_[name] = device;
if (OSc_Device_HasDetector(device, &flag) == OSc_OK && flag)
detectorDevices_[name] = device;
}
CreateStringProperty(PROPERTY_Clock, VALUE_Unselected, false, 0, true);
AddAllowedValue(PROPERTY_Clock, VALUE_Unselected);
for (const auto &clk : clockDevices_) {
AddAllowedValue(PROPERTY_Clock, clk.first.c_str());
}
CreateStringProperty(PROPERTY_Scanner, VALUE_Unselected, false, 0, true);
AddAllowedValue(PROPERTY_Scanner, VALUE_Unselected);
for (const auto &scn : scannerDevices_) {
AddAllowedValue(PROPERTY_Scanner, scn.first.c_str());
}
for (std::size_t i = 0; i < MAX_DETECTOR_DEVICES; ++i) {
const std::string propName =
PROPERTY_Detector_Prefix + std::to_string(i);
CreateStringProperty(propName.c_str(), VALUE_Unselected, false, 0,
true);
AddAllowedValue(propName.c_str(), VALUE_Unselected);
for (const auto &det : detectorDevices_) {
AddAllowedValue(propName.c_str(), det.first.c_str());
}
}
}
OpenScan::~OpenScan() {}
extern "C" {
static void LogOpenScan(const char *msg, OSc_LogLevel level, void *data) {
OpenScan *self = (OpenScan *)data;
self->LogOpenScanMessage(msg, level);
}
}
void OpenScan::LogOpenScanMessage(const char *msg, OSc_LogLevel level) {
LogMessage(msg, level <= OSc_LogLevel_Info);
}
static void MagChangeCallback(OSc_Setting *, void *hub) {
static_cast<OpenScanHub *>(hub)->OnMagnifierChanged();
}
int OpenScan::Initialize() {
OSc_RichError *err = OSc_LSM_Create(&oscLSM_);
if (err != OSc_OK)
return AdHocErrorCode(err);
char clockName[MM::MaxStrLength + 1];
int stat = GetProperty(PROPERTY_Clock, clockName);
if (stat != DEVICE_OK)
return stat;
char scannerName[MM::MaxStrLength + 1];
stat = GetProperty(PROPERTY_Scanner, scannerName);
if (stat != DEVICE_OK)
return stat;
const std::string unsel = VALUE_Unselected;
std::vector<std::string> detectorNames;
for (std::size_t i = 0; i < MAX_DETECTOR_DEVICES; ++i) {
char detNam[MM::MaxStrLength + 1];
stat = GetProperty(
(PROPERTY_Detector_Prefix + std::to_string(i)).c_str(), detNam);
if (stat != DEVICE_OK)
return stat;
if (detNam == unsel)
continue;
for (const auto &nam : detectorNames) {
if (nam == detNam) {
return AdHocErrorCode(
"The same detector device may not be added twice");
}
}
detectorNames.push_back(detNam);
}
if (clockName == unsel)
return AdHocErrorCode("Clock device must be selected");
OSc_Device *clockDevice = clockDevices_.at(clockName);
if (scannerName == unsel)
return AdHocErrorCode("Scanner device must be selected");
OSc_Device *scannerDevice = scannerDevices_.at(scannerName);
std::vector<OSc_Device *> detectorDevices;
for (const auto &detNam : detectorNames) {
detectorDevices.push_back(detectorDevices_.at(detNam));
}
OSc_Device_SetLogFunc(clockDevice, LogOpenScan, this);
OSc_Device_SetLogFunc(scannerDevice, LogOpenScan, this);
for (OSc_Device *det : detectorDevices) {
OSc_Device_SetLogFunc(det, LogOpenScan, this);
}
err = OSc_Device_Open(clockDevice, oscLSM_);
if (err != OSc_OK)
return AdHocErrorCode(err);
if (scannerDevice != clockDevice) {
err = OSc_Device_Open(scannerDevice, oscLSM_);
if (err != OSc_OK)
return AdHocErrorCode(err);
}
for (OSc_Device *det : detectorDevices) {
if (det != scannerDevice && det != clockDevice) {
err = OSc_Device_Open(det, oscLSM_);
if (err != OSc_OK)
return AdHocErrorCode(err);
}
}
err = OSc_LSM_SetClockDevice(oscLSM_, clockDevice);
if (err != OSc_OK)
return AdHocErrorCode(err);
err = OSc_LSM_SetScannerDevice(oscLSM_, scannerDevice);
if (err != OSc_OK)
return AdHocErrorCode(err);
for (OSc_Device *det : detectorDevices) {
err = OSc_LSM_AddDetectorDevice(oscLSM_, det);
if (err != OSc_OK)
return AdHocErrorCode(err);
}
err = OSc_AcqTemplate_Create(&acqTemplate_, oscLSM_);
if (err != OSc_OK)
return AdHocErrorCode(err);
int errCode = GenerateProperties();
if (errCode != DEVICE_OK)
return errCode;
// Register callback for magnification change
OSc_Setting *magSetting;
err = OSc_AcqTemplate_GetMagnificationSetting(acqTemplate_, &magSetting);
if (err != OSc_OK)
return AdHocErrorCode(err);
OSc_Setting_SetInvalidateCallback(magSetting, MagChangeCallback,
GetParentHub());
// Standard properties Exposure and Binning - not used for LSM
errCode = CreateFloatProperty(MM::g_Keyword_Exposure, 0.0, false);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(MM::g_Keyword_Exposure, "0.0000");
if (errCode != DEVICE_OK)
return errCode;
errCode = CreateIntegerProperty(MM::g_Keyword_Binning, 1, false);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(MM::g_Keyword_Binning, "1");
if (errCode != DEVICE_OK)
return errCode;
OpenScanHub *pHub = static_cast<OpenScanHub *>(GetParentHub());
pHub->SetCameraDevice(this);
return DEVICE_OK;
}
int OpenScan::Shutdown() {
if (!oscLSM_)
return DEVICE_OK;
StopSequenceAcquisition();
OpenScanHub *pHub = static_cast<OpenScanHub *>(GetParentHub());
if (pHub)
pHub->SetCameraDevice(0);
OSc_LSM_Destroy(oscLSM_);
oscLSM_ = 0;
return DEVICE_OK;
}
int OpenScan::GenerateProperties() {
OSc_Device *clockDevice = OSc_LSM_GetClockDevice(oscLSM_);
OSc_Device *scannerDevice = OSc_LSM_GetScannerDevice(oscLSM_);
std::vector<OSc_Device *> detectorDevices;
for (std::size_t i = 0; i < OSc_LSM_GetNumberOfDetectorDevices(oscLSM_);
++i) {
detectorDevices.push_back(OSc_LSM_GetDetectorDevice(oscLSM_, i));
}
OSc_Setting **settings;
size_t count;
OSc_RichError *err;
int errCode;
err = OSc_Device_GetSettings(clockDevice, &settings, &count);
if (err != OSc_OK)
return AdHocErrorCode(err);
errCode = GenerateProperties(settings, count, clockDevice);
if (errCode != DEVICE_OK)
return errCode;
if (scannerDevice != clockDevice) {
err = OSc_Device_GetSettings(scannerDevice, &settings, &count);
if (err != OSc_OK)
return AdHocErrorCode(err);
errCode = GenerateProperties(settings, count, scannerDevice);
if (errCode != DEVICE_OK)
return errCode;
}
for (OSc_Device *detDev : detectorDevices) {
if (detDev != scannerDevice && detDev != clockDevice) {
err = OSc_Device_GetSettings(detDev, &settings, &count);
if (err != OSc_OK)
return AdHocErrorCode(err);
errCode = GenerateProperties(settings, count, detDev);
if (errCode != DEVICE_OK)
return errCode;
}
}
OSc_Setting *acqSettings[3];
err = OSc_AcqTemplate_GetPixelRateSetting(acqTemplate_, &acqSettings[0]);
if (err != OSc_OK)
return AdHocErrorCode(err);
err = OSc_AcqTemplate_GetResolutionSetting(acqTemplate_, &acqSettings[1]);
if (err != OSc_OK)
return AdHocErrorCode(err);
err = OSc_AcqTemplate_GetZoomFactorSetting(acqTemplate_, &acqSettings[2]);
if (err != OSc_OK)
return AdHocErrorCode(err);
errCode = GenerateProperties(acqSettings, 3, NULL);
if (errCode != DEVICE_OK)
return errCode;
// Properties that are not OpenScan settings:
for (std::size_t i = 0; i < detectorDevices.size(); ++i) {
OSc_Device *detDev = detectorDevices[i];
const char *devName;
err = OSc_Device_GetName(detDev, &devName);
if (err != OSc_OK)
return AdHocErrorCode(err);
bool enabled =
OSc_AcqTemplate_IsDetectorDeviceEnabled(acqTemplate_, i);
const auto propName = PROPERTY_EnableDetector_Prefix +
std::to_string(i) + "-" + std::string(devName);
CPropertyActionEx *handler = new CPropertyActionEx(
this, &OpenScan::OnEnableDetectorProperty, long(i));
errCode = CreateStringProperty(
propName.c_str(), enabled ? VALUE_Yes : VALUE_No, false, handler);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(propName.c_str(), VALUE_Yes);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(propName.c_str(), VALUE_No);
if (errCode != DEVICE_OK)
return errCode;
}
return DEVICE_OK;
}
int OpenScan::GenerateProperties(OSc_Setting **settings, size_t count,
OSc_Device *device) {
OSc_RichError *err;
int errCode;
for (size_t i = 0; i < count; ++i) {
OSc_Setting *setting = settings[i];
long index = static_cast<long>(settingIndex_.size());
settingIndex_.push_back(setting);
const char *device_name;
char setting_name[OSc_MAX_STR_LEN + 1];
if (!device) {
device_name = "LSM";
} else {
err = OSc_Device_GetName(device, &device_name);
if (err != OSc_OK)
return AdHocErrorCode(err);
}
err = OSc_Setting_GetName(setting, setting_name);
if (err != OSc_OK)
return AdHocErrorCode(err);
char name[OSc_MAX_STR_LEN + 1];
snprintf(name, OSc_MAX_STR_LEN + 1, "%s-%s", device_name,
setting_name);
OSc_ValueType valueType;
err = OSc_Setting_GetValueType(setting, &valueType);
if (err != OSc_OK)
return AdHocErrorCode(err);
bool writable;
err = OSc_Setting_IsWritable(setting, &writable);
if (err != OSc_OK)
return AdHocErrorCode(err);
switch (valueType) {
case OSc_ValueType_String: {
char value[OSc_MAX_STR_LEN + 1];
err = OSc_Setting_GetStringValue(setting, value);
if (err != OSc_OK)
return AdHocErrorCode(err);
CPropertyActionEx *handler = new CPropertyActionEx(
this, &OpenScan::OnStringProperty, index);
errCode = CreateStringProperty(name, value, !writable, handler);
if (errCode != DEVICE_OK)
return errCode;
break;
}
case OSc_ValueType_Bool: {
bool value;
err = OSc_Setting_GetBoolValue(setting, &value);
if (err != OSc_OK)
return AdHocErrorCode(err);
CPropertyActionEx *handler =
new CPropertyActionEx(this, &OpenScan::OnBoolProperty, index);
errCode = CreateStringProperty(name, value ? VALUE_Yes : VALUE_No,
!writable, handler);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(name, VALUE_Yes);
if (errCode != DEVICE_OK)
return errCode;
errCode = AddAllowedValue(name, VALUE_No);
if (errCode != DEVICE_OK)
return errCode;
break;
}
case OSc_ValueType_Int32: {
int32_t value;
err = OSc_Setting_GetInt32Value(setting, &value);
if (err != OSc_OK)
return AdHocErrorCode(err);
CPropertyActionEx *handler =
new CPropertyActionEx(this, &OpenScan::OnInt32Property, index);
errCode = CreateIntegerProperty(name, value, !writable, handler);
if (errCode != DEVICE_OK)
return errCode;
OSc_ValueConstraint constraint;
err = OSc_Setting_GetNumericConstraintType(setting, &constraint);
if (err != OSc_OK)
return AdHocErrorCode(err);
switch (constraint) {
case OSc_ValueConstraint_Discrete:
int32_t *values;
size_t numValues;
err = OSc_Setting_GetInt32DiscreteValues(setting, &values,
&numValues);
if (err != OSc_OK)
return AdHocErrorCode(err);
for (int j = 0; j < numValues; ++j) {
char valueStr[OSc_MAX_STR_LEN + 1];
snprintf(valueStr, OSc_MAX_STR_LEN, "%d", values[j]);
errCode = AddAllowedValue(name, valueStr);
if (errCode != DEVICE_OK)
return errCode;
}
break;
case OSc_ValueConstraint_Continuous:
int32_t min, max;
err = OSc_Setting_GetInt32ContinuousRange(setting, &min, &max);
if (err != OSc_OK)
return AdHocErrorCode(err);
SetPropertyLimits(name, min, max);
break;
}
break;
}
case OSc_ValueType_Float64: {
double value;
err = OSc_Setting_GetFloat64Value(setting, &value);
if (err != OSc_OK)
return AdHocErrorCode(err);
CPropertyActionEx *handler = new CPropertyActionEx(
this, &OpenScan::OnFloat64Property, index);
errCode = CreateFloatProperty(name, value, !writable, handler);
if (errCode != DEVICE_OK)
return errCode;
OSc_ValueConstraint constraint;
err = OSc_Setting_GetNumericConstraintType(setting, &constraint);
if (err != OSc_OK)
return AdHocErrorCode(err);
switch (constraint) {
case OSc_ValueConstraint_Discrete:
double *values;
size_t numValues;
err = OSc_Setting_GetFloat64DiscreteValues(setting, &values,
&numValues);
for (int j = 0; j < numValues; ++j) {
char valueStr[OSc_MAX_STR_LEN + 1];
snprintf(valueStr, OSc_MAX_STR_LEN, "%0.4f", values[j]);
errCode = AddAllowedValue(name, valueStr);
if (errCode != DEVICE_OK)
return errCode;
}
break;
case OSc_ValueConstraint_Continuous:
double min, max;
err =
OSc_Setting_GetFloat64ContinuousRange(setting, &min, &max);
SetPropertyLimits(name, min, max);
break;
}
break;
}
case OSc_ValueType_Enum: {
uint32_t value;
err = OSc_Setting_GetEnumValue(setting, &value);
char valueStr[OSc_MAX_STR_LEN + 1];
err = OSc_Setting_GetEnumNameForValue(setting, value, valueStr);
CPropertyActionEx *handler =
new CPropertyActionEx(this, &OpenScan::OnEnumProperty, index);
errCode = CreateStringProperty(name, valueStr, !writable, handler);
if (errCode != DEVICE_OK)
return errCode;
uint32_t numValues;
err = OSc_Setting_GetEnumNumValues(setting, &numValues);
if (err != OSc_OK)
return AdHocErrorCode(err);
for (uint32_t j = 0; j < numValues; ++j) {
err = OSc_Setting_GetEnumNameForValue(setting, j, valueStr);
if (err != OSc_OK)
return AdHocErrorCode(err);
errCode = AddAllowedValue(name, valueStr);
if (errCode != DEVICE_OK)
return errCode;
}
break;
}
}
}
return DEVICE_OK;
}
int OpenScan::GetMagnification(double *magnification) {
// We define magnification 1.0 as default resolution at Zoom 1.0.
OSc_RichError *err;
OSc_Setting *magSetting;
if (OSc_CHECK_ERROR(err, OSc_AcqTemplate_GetMagnificationSetting(
acqTemplate_, &magSetting))) {
return AdHocErrorCode(err);
}
return AdHocErrorCode(
OSc_Setting_GetFloat64Value(magSetting, magnification));
}
bool OpenScan::Busy() { return false; }
void OpenScan::GetName(char *name) const {
CDeviceUtils::CopyLimitedString(name, DEVICE_NAME_Camera);
}
extern "C" {
static bool SnapFrameCallback(OSc_Acquisition *acq, uint32_t chan,
void *pixels, void *data) {
OpenScan *self = static_cast<OpenScan *>(data);
self->StoreSnapImage(acq, chan, pixels);
return true;
}
}
int OpenScan::SnapImage() {
if (IsCapturing())
return DEVICE_CAMERA_BUSY_ACQUIRING;
DiscardPreviouslySnappedImages();
OSc_Acquisition *acq;
OSc_RichError *err = OSc_Acquisition_Create(&acq, acqTemplate_);
if (err)
return AdHocErrorCode(err);
err = OSc_Acquisition_SetData(acq, this);
if (err)
goto error;
err = OSc_Acquisition_SetNumberOfFrames(acq, 1);
if (err)
goto error;
err = OSc_Acquisition_SetFrameCallback(acq, SnapFrameCallback);
if (err)
goto error;
err = OSc_Acquisition_Arm(acq);
if (err)
goto error;
err = OSc_Acquisition_Start(acq);
if (err)
goto error;
err = OSc_Acquisition_Wait(acq);
if (err)
goto error;
OSc_Acquisition_Destroy(acq);
return DEVICE_OK;
error:
int errCode = AdHocErrorCode(err);
OSc_Acquisition_Destroy(acq);
return errCode;
}
void OpenScan::StoreSnapImage(OSc_Acquisition *, uint32_t chan, void *pixels) {
size_t bufSize = GetImageBufferSize();
void *buffer = malloc(bufSize);
memcpy(buffer, pixels, bufSize);
if (snappedImages_.size() < chan + 1)
snappedImages_.resize(chan + 1, 0);
if (snappedImages_[chan])
free(snappedImages_[chan]);
snappedImages_[chan] = buffer;
}
void OpenScan::DiscardPreviouslySnappedImages() {
for (std::vector<void *>::iterator it = snappedImages_.begin(),
end = snappedImages_.end();
it != end; ++it) {
if (*it)
free(*it);
}
snappedImages_.clear();
}
const unsigned char *OpenScan::GetImageBuffer(unsigned chan) {
if (chan >= GetNumberOfChannels() || chan >= snappedImages_.size())
return 0;
return reinterpret_cast<unsigned char *>(snappedImages_[chan]);
}
long OpenScan::GetImageBufferSize() const {
return GetImageWidth() * GetImageHeight() * GetImageBytesPerPixel();
}
unsigned OpenScan::GetImageWidth() const {
uint32_t xOffset, yOffset, width, height;
OSc_AcqTemplate_GetROI(acqTemplate_, &xOffset, &yOffset, &width, &height);
return width;
}
unsigned OpenScan::GetImageHeight() const {
uint32_t xOffset, yOffset, width, height;
OSc_AcqTemplate_GetROI(acqTemplate_, &xOffset, &yOffset, &width, &height);
return height;
}
unsigned OpenScan::GetImageBytesPerPixel() const {
uint32_t bps;
OSc_AcqTemplate_GetBytesPerSample(acqTemplate_, &bps);
return bps;
}
unsigned OpenScan::GetNumberOfComponents() const { return 1; }
unsigned OpenScan::GetNumberOfChannels() const {
uint32_t nChannels;
OSc_AcqTemplate_GetNumberOfChannels(acqTemplate_, &nChannels);
return nChannels;
}
int OpenScan::GetChannelName(unsigned channel, char *name) {
snprintf(name, MM::MaxStrLength, "OpenScanChannel-%u", channel);
return DEVICE_OK;
}
unsigned OpenScan::GetBitDepth() const {
// TODO Get from OpenScan
return 16;
}
int OpenScan::SetROI(unsigned x, unsigned y, unsigned width, unsigned height) {
return AdHocErrorCode(
OSc_AcqTemplate_SetROI(acqTemplate_, x, y, width, height));
}
int OpenScan::GetROI(unsigned &x, unsigned &y, unsigned &xSize,
unsigned &ySize) {
return AdHocErrorCode(
OSc_AcqTemplate_GetROI(acqTemplate_, &x, &y, &xSize, &ySize));
}
int OpenScan::ClearROI() {
OSc_AcqTemplate_ResetROI(acqTemplate_);
return DEVICE_OK;
}
extern "C" {
static bool SequenceFrameCallback(OSc_Acquisition *acq, uint32_t chan,
void *pixels, void *data) {
OpenScan *self = static_cast<OpenScan *>(data);
return self->SendSequenceImage(acq, chan, pixels);
}
}
int OpenScan::StartSequenceAcquisition(long count, double,
bool stopOnOverflow) {
// I cannot think of a reasonable situation
// when IsCapturing is false while sequenceAcquisition_ is true.
// possibly it means previous live mode is not stopped properly
// anyway remove sequenceAcquisition_ from if ocndition for now
// TODO: need to fully test whether this change is valid?
if (IsCapturing())
return DEVICE_CAMERA_BUSY_ACQUIRING;
if (count < 1)
return DEVICE_OK;
OSc_Acquisition *acq;
OSc_RichError *err = OSc_Acquisition_Create(&acq, acqTemplate_);
err = OSc_Acquisition_SetData(acq, this);
if (err)
return AdHocErrorCode(err);
err = OSc_Acquisition_SetNumberOfFrames(acq, count);
if (err)
return AdHocErrorCode(err);
err = OSc_Acquisition_SetFrameCallback(acq, SequenceFrameCallback);
if (err)
return AdHocErrorCode(err);
err = OSc_Acquisition_Arm(acq);
if (err)
return AdHocErrorCode(err);
GetCoreCallback()->PrepareForAcq(this);
err = OSc_Acquisition_Start(acq);
if (err)
return AdHocErrorCode(err);
sequenceAcquisition_ = acq;
sequenceAcquisitionStopOnOverflow_ = stopOnOverflow;
return DEVICE_OK;
}
int OpenScan::StopSequenceAcquisition() {
if (!oscLSM_)
return DEVICE_OK;
if (!IsCapturing() || !sequenceAcquisition_)
return DEVICE_OK;
OSc_RichError *err = OSc_Acquisition_Stop(sequenceAcquisition_);
GetCoreCallback()->AcqFinished(this, DEVICE_OK);
err = OSc_Acquisition_Destroy(sequenceAcquisition_);
sequenceAcquisition_ = 0;
return DEVICE_OK;
}
bool OpenScan::SendSequenceImage(OSc_Acquisition *, uint32_t chan,
void *pixels) {
char cameraName[MM::MaxStrLength];
GetChannelName(chan, cameraName);
// To work like Multi Camera, we must include the camera channel index. The
// metadata key for this is (for legacy reasons?) strange: it must include
// the device label of the camera.
// We also generate tags without the device label.
char myLabel[MM::MaxStrLength + 1];
GetLabel(myLabel);
std::string deviceTaggedChannelIndex(myLabel);
deviceTaggedChannelIndex += '-';
deviceTaggedChannelIndex += MM::g_Keyword_CameraChannelIndex;
std::string deviceTaggedChannelName(myLabel);
deviceTaggedChannelName += '-';
deviceTaggedChannelName += MM::g_Keyword_CameraChannelName;
char chanName[MM::MaxStrLength + 1]{};
GetChannelName(chan, chanName);
Metadata md;
md.put(deviceTaggedChannelIndex.c_str(), chan);
md.put(MM::g_Keyword_CameraChannelIndex, chan);
if (strlen(chanName) > 0) {
md.put(deviceTaggedChannelName.c_str(), chanName);
md.put(MM::g_Keyword_CameraChannelName, chanName);
}
unsigned width = GetImageWidth();
unsigned height = GetImageHeight();
unsigned bytesPerPixel = GetImageBytesPerPixel();
unsigned char *p = static_cast<unsigned char *>(pixels);
int err = GetCoreCallback()->InsertImage(
this, p, width, height, bytesPerPixel, md.Serialize().c_str());
if (!sequenceAcquisitionStopOnOverflow_ && err == DEVICE_BUFFER_OVERFLOW) {
GetCoreCallback()->ClearImageBuffer(this);
err = GetCoreCallback()->InsertImage(this, p, width, height,
bytesPerPixel,
md.Serialize().c_str(), false);
return err == DEVICE_OK;
} else if (err != DEVICE_OK) {
return false;
}
return true;
}
bool OpenScan::IsCapturing() {
if (!oscLSM_)
return false;
bool isRunning;
OSc_RichError *err = OSc_LSM_IsRunningAcquisition(oscLSM_, &isRunning);
if (err != OSc_OK)
return false;
return isRunning;
}
int OpenScan::OnStringProperty(MM::PropertyBase *pProp, MM::ActionType eAct,
long data) {
OSc_RichError *err;
OSc_Setting *setting = settingIndex_[data];
if (eAct == MM::BeforeGet) {
char value[OSc_MAX_STR_LEN + 1];
err = OSc_Setting_GetStringValue(setting, value);
pProp->Set(value);
} else if (eAct == MM::AfterSet) {
std::string value;
pProp->Get(value);
err = OSc_Setting_SetStringValue(setting, value.c_str());
}
return DEVICE_OK;
}
int OpenScan::OnBoolProperty(MM::PropertyBase *pProp, MM::ActionType eAct,
long data) {
OSc_RichError *err;
OSc_Setting *setting = settingIndex_[data];
if (eAct == MM::BeforeGet) {
bool value;
err = OSc_Setting_GetBoolValue(setting, &value);
pProp->Set(value ? VALUE_Yes : VALUE_No);
} else if (eAct == MM::AfterSet) {
std::string value;
pProp->Get(value);
err = OSc_Setting_SetBoolValue(setting, value == VALUE_Yes);
}
return DEVICE_OK;
}
int OpenScan::OnInt32Property(MM::PropertyBase *pProp, MM::ActionType eAct,
long data) {
OSc_RichError *err;
OSc_Setting *setting = settingIndex_[data];
if (eAct == MM::BeforeGet) {
int32_t value;
err = OSc_Setting_GetInt32Value(setting, &value);
pProp->Set(static_cast<long>(value));
} else if (eAct == MM::AfterSet) {
long value;
pProp->Get(value);
err = OSc_Setting_SetInt32Value(setting, static_cast<int32_t>(value));
}
return DEVICE_OK;
}
int OpenScan::OnFloat64Property(MM::PropertyBase *pProp, MM::ActionType eAct,
long data) {
OSc_RichError *err;
OSc_Setting *setting = settingIndex_[data];
if (eAct == MM::BeforeGet) {
double value;
err = OSc_Setting_GetFloat64Value(setting, &value);
pProp->Set(value);
} else if (eAct == MM::AfterSet) {
double value;
pProp->Get(value);
err = OSc_Setting_SetFloat64Value(setting, value);
if (err)
return AdHocErrorCode(err);
// TEMPORARY: Special handling for Zoom change, which affect
// magnification. A proper interface should be added to OpenScan C API
// that allows us to subscribe to resolutionSetting changes.
char name[1024];
err = OSc_Setting_GetName(setting, name);
if (err)
return AdHocErrorCode(err);
}
return DEVICE_OK;
}
int OpenScan::OnEnumProperty(MM::PropertyBase *pProp, MM::ActionType eAct,
long data) {
OSc_RichError *err;
OSc_Setting *setting = settingIndex_[data];
if (eAct == MM::BeforeGet) {
uint32_t value;
err = OSc_Setting_GetEnumValue(setting, &value);
char valueStr[OSc_MAX_STR_LEN + 1];
err = OSc_Setting_GetEnumNameForValue(setting, value, valueStr);
pProp->Set(valueStr);
} else if (eAct == MM::AfterSet) {
std::string valueStr;
pProp->Get(valueStr);
uint32_t value;
err =
OSc_Setting_GetEnumValueForName(setting, &value, valueStr.c_str());
err = OSc_Setting_SetEnumValue(setting, value);
}
return DEVICE_OK;
}
int OpenScan::OnEnableDetectorProperty(MM::PropertyBase *pProp,
MM::ActionType eAct, long data) {
std::size_t i = data;
if (eAct == MM::BeforeGet) {
bool enabled =
OSc_AcqTemplate_IsDetectorDeviceEnabled(acqTemplate_, i);
pProp->Set(enabled ? VALUE_Yes : VALUE_No);
} else if (eAct == MM::AfterSet) {
std::string valueStr;
pProp->Get(valueStr);
bool enable = (valueStr == VALUE_Yes);
OSc_AcqTemplate_SetDetectorDeviceEnabled(acqTemplate_, i, enable);
}
return DEVICE_OK;
}
int OpenScan::AdHocErrorCode(OSc_RichError *richError) {
if (richError == OSc_OK)
return DEVICE_OK;
std::string buffer;
buffer.resize(MM::MaxStrLength);
// buffer.data() is const until C++17
OSc_Error_FormatRecursive(richError, &buffer[0], MM::MaxStrLength);
OSc_Error_Destroy(richError);
buffer.resize(std::strlen(buffer.data()));
return AdHocErrorCode(buffer);
}
int OpenScan::AdHocErrorCode(const std::string &message) {
int ret = nextAdHocErrorCode_++;
if (nextAdHocErrorCode_ > MAX_ADHOC_ERROR_CODE)
nextAdHocErrorCode_ = MIN_ADHOC_ERROR_CODE;
SetErrorText(ret, message.c_str());
return ret;
}
int OpenScanHub::Initialize() { return DEVICE_OK; }
void OpenScanHub::GetName(char *pName) const {
CDeviceUtils::CopyLimitedString(pName, DEVICE_NAME_Hub);
}
int OpenScanHub::DetectInstalledDevices() {
MM::Device *camera = CreateDevice(DEVICE_NAME_Camera);
if (camera)
AddInstalledDevice(camera);
MM::Device *magnifier = CreateDevice(DEVICE_NAME_Magnifier);
if (magnifier)
AddInstalledDevice(magnifier);
return DEVICE_OK;
}
void OpenScanHub::SetCameraDevice(OpenScan *camera) {
openScanCamera_ = camera;
}
void OpenScanHub::SetMagnificationChangeNotifier(
OpenScanMagnifier *magnifier, MagChangeNotifierType notifier) {
magnifier_ = magnifier;
magChangeNotifier_ = notifier;
}
int OpenScanHub::GetMagnification(double *mag) {
if (!openScanCamera_)
return DEVICE_ERR;
return openScanCamera_->GetMagnification(mag);
}
int OpenScanHub::OnMagnifierChanged() {
if (!magChangeNotifier_ || !magnifier_) {
return DEVICE_OK;
}
int err = (magnifier_->*magChangeNotifier_)();
if (err != DEVICE_OK)
return err;
return DEVICE_OK;
}
OpenScanMagnifier::OpenScanMagnifier() {}
void OpenScanMagnifier::GetName(char *name) const {
CDeviceUtils::CopyLimitedString(name, DEVICE_NAME_Magnifier);
}
int OpenScanMagnifier::Initialize() {
OpenScanHub *pHub = static_cast<OpenScanHub *>(GetParentHub());
pHub->SetMagnificationChangeNotifier(
this, &OpenScanMagnifier::HandleMagnificationChange);
return DEVICE_OK;
}
int OpenScanMagnifier::Shutdown() {
OpenScanHub *pHub = static_cast<OpenScanHub *>(GetParentHub());
if (pHub)
pHub->SetMagnificationChangeNotifier(0, 0);
return DEVICE_OK;
}
double OpenScanMagnifier::GetMagnification() {