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@BiAPoL Bio-image Analysis group at the DFG Cluster of Excellence "Physics of Life" at TU Dresden

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    40 repositories

    • biaplotter

      Public
      A base napari plotter widget for interactive plotting
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•7•2•Updated Oct 17, 2024Oct 17, 2024

    • napari-clusters-plotter

      Public
      A napari plugin for clustering objects according to their properties.
      clusteringplottingnapari-pluginpython
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •10•79•33•6•Updated Oct 14, 2024Oct 14, 2024

    • DIGS-BB_LM_Course_Bio-Image_Analysis_2024

      Public
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • omero-tools

      Public
      Example notebooks and tricks to interact with OMERO from Python
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•1•Updated Sep 2, 2024Sep 2, 2024

    • blog

      Public
      Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
      Creative Commons Attribution 4.0 International
      •8•12•8•3•Updated Aug 21, 2024Aug 21, 2024

    • BioImage-Analysis-and-Data-Processing-Workshop-2024

      Public
      This repository hosts material for the BioImage Analysis and Data Processing Workshop 2024, which takes place in VMCF Microscopy Facility, Vinicna 7, Prague, Czechia
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Aug 8, 2024Aug 8, 2024

    • napari-clusters-plotter-example-notebooks

      Public
      This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•1•1•Updated Jun 13, 2024Jun 13, 2024

    • PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis

      Public
      PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
      training-materials
      Cool
      •
      Creative Commons Attribution 4.0 International
      •9•25•0•0•Updated Jun 5, 2024Jun 5, 2024

    • .github

      Public
      0•1•1•0•Updated Apr 18, 2024Apr 18, 2024

    • biapol.github.io

      Public
      HTML
      •0•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • napari-crop

      Public
      napari-plugin
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•7•17•1•Updated Dec 5, 2023Dec 5, 2023

    • microscope-gym

      Public
      An open python smart-microscopy API
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•1•Updated Nov 28, 2023Nov 28, 2023

    • Pasteur-NEUBIAS-training-school-on-Bioimage-Analysis

      Public
      Training school focused on Bioimage Analysis. Home page: https://research.pasteur.fr/en/course/neubias-pasteur-course-on-bioimage-analysis/
      training-materials
      Cool
      •
      Creative Commons Attribution 4.0 International
      •7•0•0•0•Updated Oct 14, 2023Oct 14, 2023

    • Fileserver-to-HPC

      Public
      Monitors a folder and automatically processes new subdirectories on an HPC cluster.
      Roff
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•1•1•Updated Sep 22, 2023Sep 22, 2023

    • Bio-image_Analysis_with_Python

      Public
      Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
      training-materials
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •47•197•3•0•Updated Sep 11, 2023Sep 11, 2023

    • DIGS-BB_LM_Course_Bio-Image_Analysis_2023

      Public
      This repository contains a collection of Python Jupyter notebooks for a one afternoon course in Image Analysis using Python and Napari.
      training-materials
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Sep 7, 2023Sep 7, 2023

    • PoL-BioImage-Analysis-TS-Early-Career-Track

      Public
      training-materials
      Shell
      •
      Creative Commons Attribution 4.0 International
      •3•7•0•0•Updated Sep 6, 2023Sep 6, 2023

    • scripts

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • docker-example-omero

      Public
      OMERO Docker compose example
      Shell
      •
      BSD 2-Clause "Simplified" License
      •26•0•0•0•Updated Jul 28, 2023Jul 28, 2023

    • Image-data-science-with-Python-and-Napari-EPFL2022

      Public
      training-materials
      Cool
      •
      Creative Commons Attribution 4.0 International
      •7•13•2•1•Updated Jul 21, 2023Jul 21, 2023

    • guanine-crystal-analysis

      Public
      A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye
      Cool
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated May 30, 2023May 30, 2023

    • napari-polo

      Public
      A napari Plugin for Polarised Light Microscopy Analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•1•Updated May 4, 2023May 4, 2023

    • Rescaling-blogpost

      Public
      This repository hosts a jupyter notebook and a minimal example for the rescaling-blogpost
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • Annotation-in-3D-blogpost

      Public
      This repository hosts a proposal for an annotation template for community annotations
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•4•0•0•Updated Apr 17, 2023Apr 17, 2023

    • Segmentation-quality-assurance-blogpost

      Public
      This repository hosts jupyter notebooks, images and videos for the segmentation quality assurance blog post.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • biapol-taurus

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•6•1•Updated Mar 9, 2023Mar 9, 2023

    • stardist-envs

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated Feb 27, 2023Feb 27, 2023

    • blog-1

      Public
      Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
      Creative Commons Attribution 4.0 International
      •8•0•0•0•Updated Jan 20, 2023Jan 20, 2023

    • HIP_Summer_School_Image_Data_Visualization_101

      Public
      training-materials
      Jupyter Notebook
      •0•1•0•0•Updated Jan 20, 2023Jan 20, 2023

    • hackathon-london-2022-11

      Public
      Collection of code from the CLIJ-CZI-EOSS hackathon at the Francis Crick Institute in Londin
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Nov 25, 2022Nov 25, 2022