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    19 repositories

    • proovread

      Public
      PacBio hybrid error correction through iterative short read consensus
      Perl
      •
      MIT License
      •20•60•9•3•Updated May 17, 2019May 17, 2019

    • SeqFilter

      Public
      Versatile FASTA/FASTQ sequence file analysis and modification tool
      Perl
      •
      MIT License
      •6•9•2•0•Updated Feb 12, 2019Feb 12, 2019

    • perl5lib-Fasta

      Public
      leightweight, oo-stlye FASTA modules
      Perl
      •
      MIT License
      •1•2•0•0•Updated Nov 24, 2018Nov 24, 2018

    • perl5lib-Verbose

      Public
      oo-style module to generate verbose messages and debug statements
      Perl
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2017Oct 23, 2017

    • bwa

      Public
      Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
      C
      •
      GNU General Public License v3.0
      •556•1•0•0•Updated Sep 14, 2017Sep 14, 2017

    • perl5lib-PipeWrap

      Public
      Perl
      •0•0•0•0•Updated Sep 1, 2017Sep 1, 2017

    • perl5lib-Sam

      Public
      Perl
      •0•0•0•0•Updated Dec 21, 2016Dec 21, 2016

    • perl5lib-Kmer

      Public
      Perl
      •0•0•0•0•Updated Dec 21, 2016Dec 21, 2016

    • perl5lib-Fastq

      Public
      leightweight, oo-stlye FASTQ modules
      Perl
      •
      MIT License
      •0•2•0•0•Updated Dec 21, 2016Dec 21, 2016

    • perl5lib-Jellyfish

      Public
      Perl
      •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

    • perl5lib-Bowtie2

      Public
      Perl
      •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

    • perl5lib-Bowtie

      Public
      Perl
      •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

    • perl5lib-Cfg

      Public
      Perl
      •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

    • SeqChunker

      Public
      efficiently split/sample from FASTA/FASTQ files on-the-fly
      Shell
      •1•1•0•0•Updated May 16, 2016May 16, 2016

    • ITS2database_update_2015

      Public
      Scripts and data for ITS2 database update in 2015
      Perl
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2015Jun 14, 2015

    • chloroExtractor

      Public
      0•0•0•0•Updated Mar 23, 2015Mar 23, 2015

    • prooveval

      Public
      Perl
      •0•1•0•0•Updated Nov 10, 2014Nov 10, 2014

    • perl5lib-Gmap

      Public
      oo-style modules to parse gmap summary output
      Perl
      •0•0•0•0•Updated Nov 10, 2014Nov 10, 2014

    • SeqStore

      Public
      Random access to FASTA sequences. Stand-alone script and perl5lib. Based on Bio::DB::Fasta
      Perl
      •0•0•0•0•Updated Nov 10, 2014Nov 10, 2014