Repositories list

• pims-plugin-format-dicom

  Public
  PIMS plugin to read DICOM files

  plugindicompims+ 1cytomine

  Python

  •

  Apache License 2.0

  •6•0•2•0•Updated Dec 17, 2024Dec 17, 2024

• Cytomine-Web-UI

  Public
  Cytomine-Web-UI is the graphical user interface for Cytomine. Our fork includes R&D experimental features. See @cytomine for official releases.

  vuejs2bulmabuefy+ 1cytomine

  Vue

  •

  Apache License 2.0

  •23•5•20•6•Updated Dec 16, 2024Dec 16, 2024

• Cytomine-cbir

  Public
  Content-Based Image Retrieval Server

  cbircontent-based-image-retrieval

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Dec 12, 2024Dec 12, 2024

• Cytomine-js-client

  Public
  Client to interact with Cytomine API in Javascript. Our fork includes R&D experimental features. See @cytomine for official releases.

  javascriptcytomine

  JavaScript

  •

  Apache License 2.0

  •9•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• Cytomine-core-spring

  Public
  Cytomine ULiège Core in Spring Boot. See @cytomine for official releases.

  javaspring-bootcytomine

  Java

  •7•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• Cytomine-python-client

  Public
  Client to interact with Cytomine API in Python. Our fork includes R&D experimental features. See @cytomine for official releases.

  pythoncytomine

  Python

  •

  Apache License 2.0

  •19•5•6•3•Updated Nov 22, 2024Nov 22, 2024

• pims

  Public
  Python Image Management Server

  pythonimagerabbitmq+ 2celeryimage-server

  Python

  •

  Apache License 2.0

  •8•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• bigpicture-cytomine-core

  Public
  Cytomine ULiège Core in Spring Boot.

  Java

  •7•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• Cytomine-bigpicture-edition

  Public
  Cytomine ULiège BIGPICTURE Edition.

  Shell

  •

  Apache License 2.0

  •7•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• bigpicture-cytomine-python-client

  Public
  Client to interact with Cytomine BIGPICTURE API in Python.

  Python

  •

  Apache License 2.0

  •19•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• bigpicture-pims

  Public
  Python Image Management Server

  Python

  •

  Apache License 2.0

  •8•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• bigpicture-cytomine-web-ui

  Public
  Cytomine-Web-UI is the graphical user interface for Cytomine.

  Vue

  •

  Apache License 2.0

  •23•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• Cytomine-community-edition

  Public
  Cytomine Community ULiège Edition. See @cytomine for official releases.

  docker-composecytomine

  Shell

  •

  Apache License 2.0

  •7•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• Cytomine-installer

  Public
  A tool for generating docker-compose-based deployment configuration of Cytomine

  Python

  •

  Apache License 2.0

  •3•1•0•0•Updated Oct 24, 2024Oct 24, 2024

• Cytomine-postgis

  Public
  Cytomine PostGis ULiège configuration. See @cytomine for official releases.

  databasepostgis

  Shell

  •

  Apache License 2.0

  •3•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• Cytomine-nginx

  Public
  Cytomine NGINX ULiège configuration. See @cytomine for official releases.

  nginx

  Dockerfile

  •

  Apache License 2.0

  •3•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• S_Segment-ML-MultiOutputET-Pred-BI

  Public
  Software that uses a binary segmentation model based on subwindow and multiple output extra-trees to segment an image

  Python

  •4•0•0•1•Updated Jul 23, 2024Jul 23, 2024

• registry-client

  Public
  A java client for docker registry api v2

  Java

  •

  Apache License 2.0

  •4•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• Cytomine-docker-entrypoint-scripts

  Public
  Shell

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• Cytomine-project-migrator

  Public
  Utility to migrate a Cytomine project from a Cytomine instance to another.

  cytomine

  Python

  •

  Apache License 2.0

  •1•0•1•2•Updated Jan 2, 2024Jan 2, 2024

• S_Create_Annotations

  Public
  Create annotations from a given threshold on a heatmap

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• .github

  Public
  Community health files for the @Cytomine-ULiege organization

  0•0•2•0•Updated Nov 29, 2023Nov 29, 2023

• Cytomine-software-router

  Public
  Cytomine module for communication between Cytomine-Core and remote processing servers. Our fork includes R&D experimental features. See @cytomine for official releases.

  appsoftware

  Groovy

  •

  Apache License 2.0

  •9•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• Cytomine-core

  Public
  This repository hosts the legacy Cytomine-Core, which is the main web server implementing the Cytomine API. Our ULiège fork includes R&D experimental features. See @cytomine for official releases.

  groovygrailslegacy-code

  Groovy

  •

  Apache License 2.0

  •30•6•4•0•Updated Sep 22, 2023Sep 22, 2023

• Cytomine-bootstrap

  Public
  This repository hosts the Cytomine Community ULiège Legacy Edition. Our fork includes R&D experimental features. See @cytomine for official releases.

  shellbashlegacy+ 1cytomine

  Shell

  •

  Apache License 2.0

  •29•4•1•0•Updated Aug 28, 2023Aug 28, 2023

• S_CellDetect_Stardist_HE_ROI

  Public
  Cell (Nuclei) Detection in ROI using Stardist

  stardistdeep-learning

  Python

  •

  Apache License 2.0

  •14•8•0•4•Updated Jul 25, 2023Jul 25, 2023

• S_Segment-CV-AdaptThres-Sample

  Public
  Cytomine software. Segmentation by computer vision using an adaptive threshold on a sample

  computer-visionimage-segmentationopencv+ 1image-processing

  Python

  •

  Apache License 2.0

  •2•1•1•2•Updated Jul 25, 2023Jul 25, 2023

• Cytomine-java-client

  Public
  Client to communicate with Cytomine API in Java. Our fork includes R&D experimental features. See @cytomine for official releases.

  javaapicytomine

  Java

  •

  Apache License 2.0

  •14•1•1•0•Updated Jul 3, 2023Jul 3, 2023

• Cytomine-BioFormats

  Public
  A BioFormats wrapper for Cytomine PIMS

  pimscytominebioformats

  Groovy

  •

  GNU General Public License v2.0

  •6•0•0•0•Updated May 23, 2023May 23, 2023

• pims-plugin-format-openslide

  Public
  pluginpimscytomine

  Python

  •

  GNU Lesser General Public License v2.1

  •5•0•0•0•Updated Apr 26, 2023Apr 26, 2023