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    20 repositories

    • docker-ubuntu-hbase

      Public
      Dockerfile for running HBase on Ubuntu
      Apache License 2.0
      •5•7•6•1•Updated Feb 18, 2020Feb 18, 2020

    • bdg-formats

      Public
      Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
      Shell
      •
      Apache License 2.0
      •35•0•0•0•Updated Nov 6, 2016Nov 6, 2016

    • optithera-scripts

      Public
      Various scripts developed for the Opti-Thera project at the CRCHUM
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated May 6, 2016May 6, 2016

    • docker-ubuntu-adam

      Public
      (Genomics) Dockerfile for running Adam - http://bdgenomics.org
      Apache License 2.0
      •3•4•3•0•Updated Feb 12, 2016Feb 12, 2016

    • 1kg-metadata

      Public
      1000 Genome Project Metadata
      JavaScript
      •
      Apache License 2.0
      •0•0•7•0•Updated Jan 16, 2016Jan 16, 2016

    • adam-ibs

      Public
      Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
      Scala
      •
      Apache License 2.0
      •6•3•28•0•Updated Nov 9, 2015Nov 9, 2015

    • variantminer

      Public
      A web UI over genomic data
      Scala
      •
      Apache License 2.0
      •1•0•14•0•Updated Oct 28, 2015Oct 28, 2015

    • sample-hbase-app

      Public
      Sample Java application that communicates with HBase via the HBase API.
      Java
      •
      Apache License 2.0
      •3•0•0•0•Updated Oct 6, 2015Oct 6, 2015

    • genomic-projects

      Public
      Repository for all Genomic Projects
      Ruby
      •0•0•0•0•Updated Sep 18, 2015Sep 18, 2015

    • adamcloud

      Public
      Portable cloud infrastructure for a genomic transformation pipeline using Adam
      Python
      •0•2•10•0•Updated Jul 23, 2015Jul 23, 2015

    • example-avro-parquet-spark

      Public
      Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.
      Scala
      •0•0•0•0•Updated Jun 24, 2015Jun 24, 2015

    • plink-ng

      Public
      A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
      C
      •
      GNU General Public License v3.0
      •127•0•0•0•Updated May 13, 2015May 13, 2015

    • docker-ubuntu-avocado

      Public
      (Genomics) Dockerfile for running Avocado - http://bdgenomics.org
      Apache License 2.0
      •1•0•2•0•Updated Apr 14, 2015Apr 14, 2015

    • plink

      Public
      (Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
      C++
      •
      GNU General Public License v2.0
      •3•3•1•0•Updated Apr 14, 2015Apr 14, 2015

    • docker-ubuntu-java

      Public
      Java Dockerfile for trusted automated Docker builds.
      MIT License
      •511•0•0•0•Updated Apr 11, 2015Apr 11, 2015

    • mononews-backend

      Public
      Backend of the Mononews application: www.mononews.ca
      Apache License 2.0
      •0•0•0•0•Updated Mar 11, 2015Mar 11, 2015

    • docker-ubuntu-scala

      Public
      Dockerfile for running Scala on Ubuntu
      Apache License 2.0
      •0•0•0•0•Updated Mar 1, 2015Mar 1, 2015

    • docker-ubuntu-snap

      Public
      (Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/
      Apache License 2.0
      •0•0•0•0•Updated Mar 1, 2015Mar 1, 2015

    • avocado

      Public
      A Variant Caller, Distributed. Apache 2 licensed.
      Scala
      •
      Other
      •42•0•0•0•Updated Feb 20, 2015Feb 20, 2015

    • adam

      Public
      A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
      Scala
      •
      Other
      •308•0•0•0•Updated Feb 18, 2015Feb 18, 2015