Repositories list

• locutus

  Public
  Terminology Management Web API

  Python

  •0•1•1•0•Updated Oct 22, 2024Oct 22, 2024

• ncpi-fhir-ig-2

  Public
  NCPI FHIR IG 2

  fhir-igncpi-fhir

  GLSL

  •1•3•12•2•Updated Oct 21, 2024Oct 21, 2024

• map-dragon

  Public
  JavaScript

  •0•2•0•1•Updated Oct 21, 2024Oct 21, 2024

• ncpi-whistler

  Public
  Data Harmonization Pipeline For NCPI Data Into FHIR

  etl

  Python

  •0•0•6•0•Updated Oct 17, 2024Oct 17, 2024

• locutus_utilities

  Public
  Python

  •0•1•0•0•Updated Oct 17, 2024Oct 17, 2024

• abacus

  Public
  Functions for data dictionary validation and summaries

  Python

  •0•1•0•0•Updated Oct 3, 2024Oct 3, 2024

• Interoperability-Projects

  Public
  Holds an overview of the currently active NCPI interoperability projects with brief descriptions of each project and links to the projects work, where available.

  0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• .github

  Public
  0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• HAPI-Dev

  Public
  Just a quick set of scripts to bring up a local HAPI FHIR server with persistentence to local disk

  Python

  •0•1•0•1•Updated Sep 16, 2024Sep 16, 2024

• dockerized-whistle

  Public
  Docker image for google's Whistle FHIR ingest language

  Shell

  •0•1•0•0•Updated Aug 20, 2024Aug 20, 2024

• ncpi-fhir-client

  Public
  Provide basic fhir client with built-in modular authentication

  Python

  •0•0•3•0•Updated Jul 30, 2024Jul 30, 2024

• ncpi-fhir-shiny-browser

  Public
  fhirncpi-fhir

  R

  •0•2•0•0•Updated Jul 16, 2024Jul 16, 2024

• ncpi-fhir-ig

  Public
  🔥 NCPI FHIR Implementation Guide

  fhir-igncpi-fhir

  GLSL

  •

  Creative Commons Zero v1.0 Universal

  •2•5•12•3•Updated Mar 4, 2024Mar 4, 2024

• NCPI-Whistler-Tutorial

  Public
  Step by Step Instructions for Converting CSV Research Style Data into FHIR Using Whistle

  etlfhirncpi-whistler+ 1tutorial

  0•2•0•0•Updated Oct 6, 2023Oct 6, 2023

• ncpi-study-summary-generation-tool

  Public archive
  Summarize FHIR data into FHIR Observations

  Python

  •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

• r4b-hapi-fhir

  Public archive
  R4 HAPI FHIR

  Java

  •

  Apache License 2.0

  •1k•0•0•0•Updated Jun 3, 2023Jun 3, 2023

• ncpi-fhir-utility

  Public archive
  🛠 FHIR model tooling (validation, xml/json conversion, publish to server)

  dockermodelpython3+ 1fhir

  Python

  •

  Apache License 2.0

  •4•0•8•3•Updated May 22, 2023May 22, 2023

• ncpi-fhir-study-summary-browser

  Public archive
  A dashboard / browser for NCPI Study Summary data

  R

  •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

• prometheus

  Public archive
  Bringing FHIR to researchers

  fhir-anvil

  Python

  •0•0•0•0•Updated Mar 14, 2023Mar 14, 2023

• wwDDENT

  Public archive
  POC Website for NCPI Data Dictionary Extraction and NLP Tool

  Python

  •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• PyDDENT

  Public archive
  NCPI Data Dictionary Extraction and NLP Tool - Python

  Python

  •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

• dockerized-whistler

  Public archive
  A Docker Container and helper scripts that provide the full functionality of NCPI Whistler in an easy to install and use form.

  Shell

  •0•0•2•0•Updated Dec 12, 2022Dec 12, 2022

• summarize-fhir

  Public archive
  Summarize FHIR datasets that conform to the NCPI FHIR IG (with data-dictionary module)

  Python

  •0•0•0•0•Updated Sep 30, 2022Sep 30, 2022

• GTEx-Public-FHIR-Whistle-Projector

  Public archive
  Public GTEx projector for Whistle

  0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• FHIR-CAT-June22

  Public archive
  Technical interop pilot using RNASeq data

  Jupyter Notebook

  •3•1•4•1•Updated Jul 13, 2022Jul 13, 2022

• NCPI_use_case_tracker

  Public archive
  This repo is for tracking NCPI interoperability use cases.

  1•3•21•1•Updated Jun 14, 2022Jun 14, 2022

• ncpi-fhir-study-summary-ig

  Public archive
  Implementation Guide governing storage of Summary Data in FHIR

  GLSL

  •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• ncpi-search-activities

  Public archive
  Issue tracker for NCPI search group activities.

  0•0•5•0•Updated Oct 29, 2021Oct 29, 2021

• ncpi-ui-fhir-data-dashboard

  Public archive
  💡📊 Prototype FHIR data dashboard - what's in my FHIR server?

  JavaScript

  •

  Apache License 2.0

  •2•0•0•0•Updated Oct 11, 2021Oct 11, 2021

• ncpi-fhir-platform-evaluation

  Public archive
  Test suite intended to be run on FHIR servers under consideration for deployment

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•6•1•Updated Jul 16, 2021Jul 16, 2021