Repositories list

• PhysiCell-Studio

  Public
  PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.

  Python

  •

  GNU General Public License v3.0

  •14•22•13•0•Updated Nov 6, 2024Nov 6, 2024

• Studio-Guide

  Public
  User Guide for PhysiCell Studio. Please report issues with the Guide in https://github.com/PhysiCell-Tools/Studio-Guide/issues.

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Oct 12, 2024Oct 12, 2024

• python-loader

  Public
  Python data loader for PhysiCell digital snapshots

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •13•8•0•0•Updated Sep 25, 2024Sep 25, 2024

• pcstudio

  Public
  pcstudio is a repo for the online nanoHUB app

  C++

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• vis3D

  Public
  Options to visualize data from a 3D model

  Python

  •2•0•0•0•Updated May 1, 2024May 1, 2024

• intracellular_libs

  Public
  Repo to host platform-specific libraries for intracellular solvers

  Python

  •1•0•0•0•Updated Jan 22, 2024Jan 22, 2024

• nanohub-studio-app

  Public
  Help build a nanoHUB app for a PhysiCell model with a Studio GUI

  0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

• python-scripts

  Public
  Useful Python scripts related to PhysiCell

  Python

  •2•0•0•0•Updated Sep 29, 2022Sep 29, 2022

• PhysiCell-Jupyter-GUI

  Public
  Template Jupyter notebook for PhysiCell-powered nanoHUB apps

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •8•7•0•1•Updated Jun 23, 2022Jun 23, 2022

• PhysiCell-Unity-explorer

  Public
  Provides a Unity scene explorer for PhysiCell data

  C#

  •1•0•0•1•Updated Feb 1, 2022Feb 1, 2022

• PhysiCell-Fury

  Public
  Fury is a Python library for (3-D) scientific visualization. This repo provides utility scripts for using it for PhysiCell output data.

  Python

  •1•0•0•0•Updated Jul 21, 2021Jul 21, 2021

• DAPT-example

  Public
  Simple examples showing how DAPT can be used with PhysiCell.

  physicelldapt

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Apr 30, 2021Apr 30, 2021

• nanoHUB_scripts

  Public
  Assorted scripts for use on nanoHUB

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Oct 9, 2019Oct 9, 2019

• matlab-loader

  Public
  Matlab data loader

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 7, 2019Sep 7, 2019

• PhysiCell-povwriter

  Public
  Simple cutaway POV-Ray

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•0•Updated Sep 6, 2019Sep 6, 2019