Repositories list

• Web-page

  Public
  Web content of the page describing the lab

  HTML

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• CNVpytor-course

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Sep 17, 2024Sep 17, 2024

• CNVpytor

  Public
  a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

  Python

  •

  MIT License

  •27•186•49•0•Updated Aug 1, 2024Aug 1, 2024

• vcf2diploid

  Public
  personal genome constructor

  Java

  •

  Other

  •11•9•5•1•Updated Jun 25, 2024Jun 25, 2024

• All2

  Public
  A tool for filtering variants from all2all comparison of multiple clones or single cells

  Python

  •

  MIT License

  •1•5•0•0•Updated Apr 21, 2022Apr 21, 2022

• CNVnator

  Public
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

  C++

  •

  Other

  •66•209•36•0•Updated Feb 17, 2022Feb 17, 2022

• CNVpytorVCF

  Public
  CNVpytor plugin for JBrowse

  JavaScript

  •

  MIT License

  •1•0•0•0•Updated Feb 9, 2021Feb 9, 2021

• SCellector

  Public
  Tool to conduct QC of single cell amplification

  Python

  •2•1•0•0•Updated Aug 1, 2020Aug 1, 2020

• Belka

  Public
  a software that implements RigidFinder, a method to detect protein rigid blocks from two different conformations.

  Java

  •

  Other

  •0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

• AGE

  Public
  a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)

  C++

  •

  Other

  •7•9•1•0•Updated Jul 15, 2019Jul 15, 2019

• Leucippus

  Public
  A tool for confirmation of mosaic variants from targeted sequencing

  Java

  •

  Other

  •1•3•0•0•Updated Mar 19, 2018Mar 19, 2018