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    20 repositories

    • handbook

      Public
      HTML
      •
      MIT License
      •6•0•7•15•Updated Apr 25, 2024Apr 25, 2024

    • bpmn

      Public
      Ruby
      •0•0•0•0•Updated Nov 17, 2022Nov 17, 2022

    • ProjectWebForm

      Public archive
      Web interface for procedures to populate the IBISBA-HUB
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•6•Updated May 6, 2021May 6, 2021

    • bioschemas.github.io

      Public
      Files for the Bioschemas website.
      HTML
      •72•0•0•0•Updated May 11, 2020May 11, 2020

    • ibisba.github.io

      Public
      IBISBAHub webpages
      Apache License 2.0
      •0•0•0•0•Updated May 5, 2020May 5, 2020

    • tascu_data

      Public
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 24, 2020Feb 24, 2020

    • RetroPath2-cwl

      Public
      RetroPath2.0 IBISBA Node
      Common Workflow Language
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 21, 2019Aug 21, 2019

    • knime-workflow-base

      Public
      Base image for IBISBA Nodes
      Shell
      •4•4•0•0•Updated Aug 20, 2019Aug 20, 2019

    • knime-base

      Public
      KNIME base image for IBISBA Nodes
      Dockerfile
      •
      Other
      •3•2•0•0•Updated Aug 20, 2019Aug 20, 2019

    • DBT_pipeline

      Public
      All tools associated with the Design Build Test pipeline for pathway discovery through RetroPath
      Python
      •0•0•0•0•Updated Aug 8, 2019Aug 8, 2019

    • extractRetroRules

      Public
      Python script that extracts all the rules from the SQL dump from the retrorules.org website
      Python
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • galaxy_workflow

      Public
      Collection of workflow files for the Galaxy interface
      0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • rpRanker

      Public
      Python package for post-rp2paths steps including: resconstruction of full pathways, calculation of Gibbs free energy, flux balance analysis and SBML handling including IBISBA annotations
      Python
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • galaxy_selenzyme

      Public
      Galaxy node that queries the http://selenzyme.synbiochem.co.uk/ REST webservice
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • galaxy_rpRanker

      Public
      Collection of tools that: complete reactions, perform FBA analysis and thermodynamics calculation of the output of RetroPath2.0
      Python
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • galaxy_retropath2.0

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • test-cwl

      Public
      Common Workflow Language
      •0•0•2•0•Updated Apr 4, 2019Apr 4, 2019

    • rp2paths-cwl

      Public
      CWL/Docker wrapping of RP2Paths
      Common Workflow Language
      •
      MIT License
      •1•0•0•0•Updated Mar 26, 2019Mar 26, 2019

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Sep 12, 2018Sep 12, 2018

    • training

      Public
      Apache License 2.0
      •0•0•5•0•Updated Jun 7, 2018Jun 7, 2018