{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"MicroSSIM","owner":"juglab","isFork":false,"description":"Range Invariant SSIM","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,2,12,0,0,0,6,4,11,4,8,21],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T09:45:19.871Z"}},{"type":"Public","name":"cellpose-bmz-wrapper","owner":"juglab","isFork":false,"description":"A wrapper to pack cellpose model for bioimage model zoo","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,3,2,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T09:33:11.842Z"}},{"type":"Public","name":"featureforest","owner":"juglab","isFork":false,"description":"A napari plugin for segmentation using vision transformers' features","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,12,8,7,6,0,0,0,0,0,0,1,0,0,0,0,0,0,0,2,6,8,1,3,6,1,1,2,5,2,9,1,3,0,0,6,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T11:31:02.517Z"}},{"type":"Public","name":"labkit-ui","owner":"juglab","isFork":false,"description":"Advanced Tool for Labeling And Segmentation","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":3,"issueCount":59,"starsCount":33,"forksCount":20,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T10:14:04.304Z"}},{"type":"Public","name":"labkit-pixel-classification","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":2,"starsCount":6,"forksCount":6,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T09:45:05.862Z"}},{"type":"Public","name":"bioimageio-uploader","owner":"juglab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Svelte","color":"#ff3e00"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-28T13:54:50.135Z"}},{"type":"Public","name":"AI4LifeSubmissions","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,17,9,6,12,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-30T16:24:56.739Z"}},{"type":"Public","name":"denoiSplit","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-12T13:17:58.872Z"}},{"type":"Public","name":"git_playground","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T13:31:09.641Z"}},{"type":"Public","name":"uSplit","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":6,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T13:16:51.805Z"}},{"type":"Public","name":"napari-n2v","owner":"juglab","isFork":false,"description":"A self-supervised denoising algorithm.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":24,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-06T15:52:20.684Z"}},{"type":"Public","name":"n2v","owner":"juglab","isFork":false,"description":"This is the implementation of Noise2Void training.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":21,"starsCount":392,"forksCount":107,"license":"Other","participation":[0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-06T15:49:17.241Z"}},{"type":"Public","name":"cryoCARE_pip","owner":"juglab","isFork":false,"description":"PIP package of cryoCARE","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":14,"starsCount":26,"forksCount":14,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T08:41:24.020Z"}},{"type":"Public","name":"core-bioimage-io-python","owner":"juglab","isFork":true,"description":"Python libraries for loading, running and packaging bioimage.io models","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":21,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-24T16:36:23.472Z"}},{"type":"Public","name":"EmbedSeg","owner":"juglab","isFork":false,"description":"Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images","allTopics":["instance-segmentation","test-time-augmentation","spatial-embeddings","deep-learning"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":110,"forksCount":23,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-14T09:26:56.909Z"}},{"type":"Public","name":"core-bioimage-io-widgets","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-11T14:14:20.167Z"}},{"type":"Public","name":"HDN","owner":"juglab","isFork":false,"description":"This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":4,"starsCount":35,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-22T10:37:54.118Z"}},{"type":"Public","name":"solvathon_sorting","owner":"juglab","isFork":false,"description":"Sorting project(10)","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-12T16:08:30.313Z"}},{"type":"Public","name":"MAESTER","owner":"juglab","isFork":true,"description":"Masked Autoencoder Guided Segmentation at Pixel Resolution","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-03T15:27:46.160Z"}},{"type":"Public","name":"labkit-command-line","owner":"juglab","isFork":false,"description":"Labkit Command Line - Segment huge images on a cluster","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":4,"starsCount":3,"forksCount":2,"license":"BSD 2-Clause \"Simplified\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-25T10:43:33.028Z"}},{"type":"Public","name":"DenoiSeg","owner":"juglab","isFork":false,"description":"Joint training of denoising and segmentation. ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":6,"starsCount":65,"forksCount":21,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-29T10:16:09.348Z"}},{"type":"Public","name":"pn2v","owner":"juglab","isFork":false,"description":"This is our implementation of Probabilistic Noise2Void","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":71,"forksCount":9,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-28T18:39:57.742Z"}},{"type":"Public","name":"PPN2V","owner":"juglab","isFork":false,"description":"Code Implementation for the publication \"Fully Unsupervised Probabilistic Noise2Void\" ","allTopics":["unsupervised-denoising","noise-model"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":54,"forksCount":9,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-28T14:50:17.491Z"}},{"type":"Public","name":"howto-collector","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-14T17:49:17.266Z"}},{"type":"Public","name":"versioning_fiji","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-14T17:47:58.129Z"}},{"type":"Public","name":"PyTr2d","owner":"juglab","isFork":false,"description":"Python based Tracking in 2D","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-12T15:09:24.709Z"}},{"type":"Public","name":"motile","owner":"juglab","isFork":true,"description":"Multi-Object Tracker using Integer Linear Equations","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-24T11:57:23.316Z"}},{"type":"Public","name":"LabelEditor","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":14,"starsCount":4,"forksCount":3,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-11T12:37:31.848Z"}},{"type":"Public","name":"labkit-remote-drawing","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":8,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-10T18:43:42.299Z"}},{"type":"Public","name":"napari-denoiseg","owner":"juglab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-01T16:02:05.845Z"}}],"repositoryCount":89,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"juglab repositories"}