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@samuellab Samuel Lab at Harvard University

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    21 repositories

    • celegans-sensory-code

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • Larval-ORN

      Public
      Code and data for the paper of 'Structured odorant response patterns across a complete olfactory receptor neuron population'
      MATLAB
      •
      MIT License
      •1•1•0•0•Updated Mar 31, 2020Mar 31, 2020

    • MAGATAnalyzer

      Public
      Multi Animal Gait and Track Analyzer
      MATLAB
      •
      Other
      •5•7•2•0•Updated Nov 16, 2018Nov 16, 2018

    • MAGATAnalyzer-Matlab-Analysis

      Public
      Analyzes larval behavior from track files created by MAGATAnalayzer-Track-Extraction or (very beta) the multi worm tracker
      MATLAB
      •
      Other
      •2•1•0•0•Updated Nov 16, 2018Nov 16, 2018

    • worm-brain-imaging-2015

      Public
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Jul 14, 2016Jul 14, 2016

    • MMF-StaticBackgroundCompressor

      Public
      Implements a simple compressions system for movies where only small parts change from frame to frame.
      C++
      •
      Other
      •2•1•0•0•Updated May 22, 2015May 22, 2015

    • FTC200-MATLAB

      Public
      MATLAB routines and GUI to connect to an FTC200 TEC Temperature Controller's serial interface
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2014Mar 5, 2014

    • mindcontrol

      Public
      MindControl closed-loop computer vision software to manipulate neural activity in a freely moving C. elegans.
      C
      •
      GNU General Public License v3.0
      •14•38•0•0•Updated Aug 28, 2013Aug 28, 2013

    • AndyTrackFeatureGUI

      Public
      A small MATLAB GUI framework for supervised image processing.
      Objective-C
      •1•1•0•0•Updated Feb 28, 2013Feb 28, 2013

    • MMF2MWT

      Public
      C++
      •
      Other
      •3•1•0•0•Updated Sep 13, 2012Sep 13, 2012

    • MindControlAccessUtils

      Public
      MATLAB scripts to read in YAML output created by MindControl software.
      MATLAB
      •5•4•0•0•Updated Aug 15, 2012Aug 15, 2012

    • EarlyVersionWormTracker

      Public
      Damon Clark's MATLAB worm tracker analysis software from 2004.
      MATLAB
      •
      GNU General Public License v2.0
      •3•1•0•0•Updated Mar 16, 2012Mar 16, 2012

    • TemporaryNetbeansGitProjectForBrunoAndMarc

      Public
      Shell
      •0•1•0•0•Updated Feb 7, 2012Feb 7, 2012

    • Marc-TicToc

      Public
      timer for c/c++ applications
      C++
      •
      Other
      •1•2•0•0•Updated Feb 6, 2012Feb 6, 2012

    • MAGATAnalyzer-Track-Extraction

      Public
      C++ and Labview (optional) software to extract tracks from video of moving animals
      C++
      •
      Other
      •0•1•0•0•Updated Dec 10, 2011Dec 10, 2011

    • MAGATAnalyzer-Example-Data

      Public
      Example image stacks (can be read using MMF-StaticBackgroundCompressor software) of Drosophila larvae navigating ethyl actetate gradients in LADY GAGA apparatus.
      1•1•0•0•Updated Dec 10, 2011Dec 10, 2011

    • Multi-Worm-Tracker--modified-for-MMFs

      Public
      a version of Rex Kerr's multi worm tracker that can read compressed files generated by the Samuel lab's software
      Java
      •1•1•0•0•Updated Dec 9, 2011Dec 9, 2011

    • megabackup

      Public
      Andy's mega backup scripts
      Python
      •0•1•0•0•Updated May 2, 2011May 2, 2011

    • InterProcess

      Public
      A compact C library to share data between processes on Windows. Fast. Simple
      C
      •
      GNU General Public License v3.0
      •6•9•0•0•Updated Feb 10, 2011Feb 10, 2011

    • colbert.physics.harvard.edu

      Public
      Home Page for the CoLBeRT project
      PHP
      •0•2•0•0•Updated Jan 27, 2011Jan 27, 2011

    • mindcontrol-analysis

      Public
      Analysis Software for the mindcontrol output
      Objective-C
      •
      GNU General Public License v3.0
      •2•6•1•0•Updated Oct 19, 2010Oct 19, 2010