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    111 repositories

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      Python
      •
      GNU General Public License v3.0
      •5•8•38•3•Updated Jan 16, 2025Jan 16, 2025

    • scipion-em-gapstop

      Public
      Plugin to use Gapstop_TM in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • docs

      Public
      Scipion documentation repository
      other
      Python
      •
      GNU General Public License v3.0
      •7•1•2•2•Updated Jan 16, 2025Jan 16, 2025

    • scipion-em-flexutils

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Jan 16, 2025Jan 16, 2025

    • scipion-em-warp

      Public
      Plugin to use Warp programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • scipion-em-facilities

      Public
      Plugin for Cryo-EM facilities to be used within Scipion framework
      other
      Python
      •
      GNU General Public License v3.0
      •1•0•6•4•Updated Jan 15, 2025Jan 15, 2025

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      Python
      •
      GNU General Public License v3.0
      •5•6•37•2•Updated Jan 14, 2025Jan 14, 2025

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•6•1•Updated Jan 13, 2025Jan 13, 2025

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•18•2•Updated Jan 13, 2025Jan 13, 2025

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•2•10•0•Updated Jan 13, 2025Jan 13, 2025

    • scipion-em-template

      Public
      Scipion template plugin with "git tags" describing steps taken to build it.
      other
      Python
      •
      GNU General Public License v3.0
      •0•1•0•1•Updated Jan 10, 2025Jan 10, 2025

    • scipion-em-tomo3d

      Public
      Plugin for the software of Jose Jesus Fernandez
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Jan 10, 2025Jan 10, 2025

    • scipion-em-reweighting

      Public
      scipion plugin for ensemble reweighting
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

    • scipion-em-datamanager

      Public
      A Scipion plugin to make depositions or retrieve data to/from several data portals
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • scipion-em-prody

      Public
      Scipion plugin for ProDy
      Python
      •
      GNU General Public License v3.0
      •1•4•9•2•Updated Jan 2, 2025Jan 2, 2025

    • scipion-em-miffi

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • scipion-em-recovar

      Public
      Plugin for the integration of RECOVAR
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • scipion-em-atomstructutils

      Public
      utilities for handling PDB/mmcif atomic structure files
      atom
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • scipion-em-fidder

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 18, 2024Dec 18, 2024

    • scipion-app

      Public
      Base Scipion application that is based on pyworkflow and all extension plugins
      core
      Python
      •
      GNU General Public License v3.0
      •2•7•8•1•Updated Dec 18, 2024Dec 18, 2024

    • scipion-em-relion

      Public
      Plugin to use Relion SPA programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•24•2•Updated Dec 17, 2024Dec 17, 2024

    • scipion-em

      Public
      Base Scipion plugin defining objects and protocols for EM
      spacoretomo
      Python
      •
      GNU General Public License v3.0
      •5•9•21•2•Updated Dec 13, 2024Dec 13, 2024

    • scipion-em-cryoten

      Public
      Wrappers to CryoTen (https://github.com/jianlin-cheng/cryoten)
      atom
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • scipion-em-deepfinder

      Public
      Scipion plugin for deepfinder (tomography picker)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•1•Updated Dec 5, 2024Dec 5, 2024

    • scipion-em-topaz

      Public
      Scipion plugin to integrate Topaz particle picker
      spa
      Python
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Dec 3, 2024Dec 3, 2024

    • scipion-em-tomosegmemtv

      Public
      Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•4•2•0•Updated Dec 3, 2024Dec 3, 2024

    • scipion-em-dynamo

      Public
      Dynamo tomography plugin for Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated Dec 3, 2024Dec 3, 2024

    • .github

      Public
      Repo to provide workflow templates for the rest of the repos in this organization
      0•0•0•1•Updated Dec 3, 2024Dec 3, 2024

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •1•1•4•0•Updated Dec 3, 2024Dec 3, 2024

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•2•0•Updated Dec 3, 2024Dec 3, 2024