Skip to content

@thepanlab the PAN lab

Change the repository type filter

All

    Repositories list

    27 repositories

    • medical-imaging-framework

      Public
      Pipeline to process images with CNN using json as input
      Python
      •
      MIT License
      •0•2•5•0•Updated Oct 14, 2024Oct 14, 2024

    • Sipros4

      Public
      Sipros for stable isotopic mass spectrum meta proteomic
      C
      •
      MIT License
      •1•7•4•0•Updated Sep 29, 2024Sep 29, 2024

    • paper-redaction-guidelines

      Public
      This repository will compile all tools that are useful to write a paper.
      0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • Endoscopic_OCT_PCN_guidance

      Public
      Scripts used for an upcoming paper
      Jupyter Notebook
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • prb_guidance_paper

      Public
      The code for paper "Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning"
      Python
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • Supercomputing_Instructions

      Public
      Useful information to use the supercomputers
      Shell
      •4•3•0•0•Updated May 31, 2024May 31, 2024

    • smoking_cessation_intervention_messages

      Public
      Scripts for paper "Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians’ Evaluation of Large Language Models for Smoking Cessation Interventions"
      nlpdecodingsmoking-cessationprompt-engineeringllms
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • WetlandSoil

      Public
      Stoichiometric model and scripts used in wetland soil project
      MATLAB
      •0•0•0•0•Updated Dec 30, 2023Dec 30, 2023

    • GattacaNet2

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Sep 21, 2023Sep 21, 2023

    • Endoscopic_OCT_Epidural

      Public
      Code used for the paper "Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning""
      tensorflowkerascnnmedical-imagingimage-classification
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • PDN_Autograder

      Public
      The autograder for Projects 1 through 5 for the CS PDN course taught by Dr. Pan
      Python
      •1•0•0•0•Updated Aug 6, 2023Aug 6, 2023

    • timecourseBiomarker

      Public
      This is the code repository for the GLMM analysis of metabolomic biomarker discovery in the paper “Persistent Biofluid Small Molecule Alterations Induced by Trypanosoma Cruzi Infection Are Not Restored by Antiparasitic Treatment.”
      0•0•0•0•Updated May 26, 2023May 26, 2023

    • LINA

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated May 9, 2023May 9, 2023

    • Aerith

      Public
      R package for isotopic mass spectra data
      C++
      •
      Other
      •0•1•0•0•Updated Apr 24, 2023Apr 24, 2023

    • Raxport.net

      Public
      .net version of Raxport for scan extraction of raw file
      C#
      •0•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • Community_stoichiometric_model

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2023Jan 8, 2023

    • thepanlab.github.io

      Public
      Lab homepage
      SCSS
      •
      MIT License
      •1•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • FOCT_kidney

      Public
      Code for the paper: "Deep-learning-aided forward optical coherence tomography endoscope for percutaneous nephrostomy guidance"
      pythonmedical-imagingimage-classificationcnn-kerasocttensorflow2
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 26, 2022Sep 26, 2022

    • Seq2MAG

      Public
      Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)
      Python
      •
      GNU General Public License v3.0
      •2•8•0•0•Updated May 27, 2022May 27, 2022

    • ukb_scripts

      Public
      Scripts to download, process and merge ukb SNPs data
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 24, 2022Jan 24, 2022

    • Endoscopic_OCT_Veress_Needle

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 11, 2021Nov 11, 2021

    • gcloud

      Public
      Google Cloud tutorial and setup
      182•0•0•0•Updated Jan 14, 2021Jan 14, 2021

    • DeepLearningTutorials

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

    • MetagenomicsTree

      Public
      Data processing tree for metagenomics
      Python
      •1•0•0•0•Updated Sep 11, 2020Sep 11, 2020

    • GattacaNet

      Public
      predictive genomics
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 4, 2020Aug 4, 2020

    • UniFam

      Public
      Scalable functional annotation of genomes
      Python
      •
      MIT License
      •0•0•1•0•Updated Jun 26, 2020Jun 26, 2020

    • Sipros

      Public
      Proteomic Stable Isotope Probing and Metaproteomics
      C
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 4, 2020Mar 4, 2020