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@tranSMART-Foundation tranSMART Foundation

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    34 repositories

    • transmartApp

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
      JavaScript
      •
      GNU General Public License v3.0
      •74•5•0•14•Updated Apr 9, 2024Apr 9, 2024

    • transmart

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work. http://transmartfoundation.org/
      JavaScript
      •3•5•7•2•Updated Mar 12, 2024Mar 12, 2024

    • transmart-docker

      Public
      Docker for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Jun 28, 2022Jun 28, 2022

    • transmartApp-doc

      Public
      Python
      •3•0•0•0•Updated Mar 24, 2020Mar 24, 2020

    • transmart-data

      Public
      Tools for managing tranSMART's database
      PLSQL
      •
      GNU General Public License v3.0
      •46•1•0•3•Updated May 31, 2019May 31, 2019

    • Rmodules

      Public
      A R statistical analysis module plugin for tranSMART
      Groovy
      •
      Other
      •34•0•0•5•Updated May 29, 2019May 29, 2019

    • Scripts

      Public
      A collection of scripts for managing all the tranSMART Foundation repositories
      Shell
      •
      GNU General Public License v3.0
      •5•0•3•2•Updated Apr 12, 2019Apr 12, 2019

    • tranSMART-ETL

      Public
      tranSMART ETL pipelines and configurations
      Groovy
      •26•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • transmart-xnat-viewer

      Public
      Connector to link tranSMART to an XNAT server
      Groovy
      •6•0•0•0•Updated Jul 30, 2018Jul 30, 2018

    • transmart-gwas-plink

      Public
      Plink integration for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•1•Updated Jul 20, 2018Jul 20, 2018

    • transmart-test

      Public
      Functional tests for tranSMART
      Groovy
      •4•0•0•0•Updated May 3, 2018May 3, 2018

    • transmart-ICE

      Public
      ICE tool for transmart ETL (formerly FCL4tranSMART)
      Java
      •1•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • RInterface

      Public
      A R module with packaged functions to query the tranSMART database directly
      R
      •
      Other
      •9•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-batch

      Public
      tranSMART pipeline alternative to ETL, using Spring Batch
      Groovy
      •14•2•0•0•Updated Mar 13, 2018Mar 13, 2018

    • GWAVA

      Public
      Genome Wide Association Study Visualizer (from Pfizer)
      HTML
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-rest-api

      Public
      HTTP available tranSMART RESTful API
      Groovy
      •
      Other
      •12•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-gwas-plugin

      Public
      The transmart (and grails) plugin that contains the GWAS elements.
      PLSQL
      •14•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-xnat-importer-plugin

      Public
      Groovy
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • SmartR

      Public
      SmartR
      JavaScript
      •
      Apache License 2.0
      •15•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • IpaApi

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • dalliance-plugin

      Public
      JavaScript
      •4•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-mydas

      Public
      Java
      •5•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • mydas

      Public
      mydas is an easy-to-extend Java DAS server framework.
      Java
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • blend4j-plugin

      Public
      blend4j-plugin is a grails plugin to access galaxy.
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-metacore-plugin

      Public
      The tranSMART plugin Metacore
      Groovy
      •6•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • folder-management-plugin

      Public
      The transmart (and grails) plugin that contains the folder-management elements.
      Groovy
      •17•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-core-db

      Public
      TranSMART Core
      Groovy
      •
      GNU General Public License v3.0
      •30•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-extensions

      Public
      Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
      Java
      •10•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-legacy-db

      Public
      Contains the Grails domain declarations of the legacy transmart schema
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-core-api

      Public
      Groovy
      •
      GNU General Public License v3.0
      •15•0•0•0•Updated Mar 13, 2018Mar 13, 2018