{"payload":{"pageCount":14,"repositories":[{"type":"Public","name":"admixture-from-glimpse","owner":"wtsi-hgi","isFork":false,"description":"Run admixture on GLIMPSE imputed genotypes to predict sample populations","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T14:47:57.649Z"}},{"type":"Public","name":"spack-repo","owner":"wtsi-hgi","isFork":false,"description":"Spack Package Repository","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T12:36:37.329Z"}},{"type":"Public","name":"farmers-report","owner":"wtsi-hgi","isFork":false,"description":"Weekly report for farm usage","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,3,0,0,2,1,0,1,0,6,2,17,14,3,7,9,18,42,16,12,7,8,16,2,2,4,2,2,0,8],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T11:19:41.417Z"}},{"type":"Public","name":"wes-qc","owner":"wtsi-hgi","isFork":false,"description":"Sample and variant QC for exome cohort studies","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":[0,0,0,0,5,8,0,0,0,0,0,7,7,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T10:38:49.415Z"}},{"type":"Public","name":"ibackup","owner":"wtsi-hgi","isFork":false,"description":"Performant backups of many files to iRODS","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T09:54:22.898Z"}},{"type":"Public","name":"softpack-web","owner":"wtsi-hgi","isFork":false,"description":"Softpack Web provides a graphical user interface for Softpack services. ","allTopics":["react","graphql"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":7,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,2,9,3,0,0,0,0,0,0,0,2,0,2,0,6,2,5,1,0,3,1,2,1,0,4,9,0,0,0,1,1,0,0,0,0,0,1,1,2,9,2,5,0,1,0,0,2,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T16:33:15.409Z"}},{"type":"Public","name":"QTLight","owner":"wtsi-hgi","isFork":false,"description":"eqtl analysis pipeline using tensorqtl","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":5,"license":"GNU General Public License v3.0","participation":[1,1,0,0,4,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,1,0,0,0,0,0,0,0,0,0,0,0,3,0,0,2,0,0,0,22,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T15:50:52.739Z"}},{"type":"Public","name":"glimpse-nextflow","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,6,0,7,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T11:53:37.134Z"}},{"type":"Public","name":"mercuryrc","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T10:23:06.265Z"}},{"type":"Public","name":"softpack-builder","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Builder provides services for building SoftPack environments","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":12,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T09:41:02.883Z"}},{"type":"Public","name":"addRStudio","owner":"wtsi-hgi","isFork":false,"description":"Add rstudio server files to an existing singularity image.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T14:48:38.337Z"}},{"type":"Public","name":"go-softpack-builder","owner":"wtsi-hgi","isFork":false,"description":"Go implementation of a softpack builder service","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T14:29:48.331Z"}},{"type":"Public","name":"wtsi-hgi.github.io","owner":"wtsi-hgi","isFork":false,"description":"Github webpage for HGI projects ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,1,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-10T15:37:25.575Z"}},{"type":"Public","name":"softpack-core","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Core ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-10T13:49:49.415Z"}},{"type":"Public","name":"osdataproc","owner":"wtsi-hgi","isFork":true,"description":"osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.","allTopics":[],"primaryLanguage":{"name":"Jinja","color":"#a52a22"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T13:10:22.451Z"}},{"type":"Public","name":"dir2singularity","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T12:52:10.603Z"}},{"type":"Public","name":"go-farmer","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T12:29:07.317Z"}},{"type":"Public","name":"go-softpack-analytics","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":[3,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T12:12:57.070Z"}},{"type":"Public","name":"softpack-docs","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Documentation","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":11,"issueCount":5,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T08:04:13.931Z"}},{"type":"Public","name":"yascp","owner":"wtsi-hgi","isFork":false,"description":"scRNA multimodal analysis pipeline utilised for large dataset processing","allTopics":["scrna-seq-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":14,"forksCount":7,"license":"GNU General Public License v3.0","participation":[10,4,5,20,4,4,3,4,1,4,1,12,0,0,0,0,2,2,1,1,0,0,4,2,5,34,3,11,6,1,16,3,3,6,0,13,11,14,4,0,0,1,3,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-02T11:58:44.164Z"}},{"type":"Public","name":"wrstat-ui","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T10:08:36.904Z"}},{"type":"Public","name":"nf_longread","owner":"wtsi-hgi","isFork":false,"description":"nextflow pipeline for long read processing","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-22T13:45:13.418Z"}},{"type":"Public","name":"uber-recipe-creator","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-21T14:31:18.820Z"}},{"type":"Public","name":"nf_tower_irods_to_lustre","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-16T13:00:40.389Z"}},{"type":"Public","name":"r-spack-recipe-builder","owner":"wtsi-hgi","isFork":false,"description":"Spack recipe creator for R packages in CRAN and Bioconductor used to build up the ubeR module for use in farm22","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,11,6,13,5,14,0,0,0,0,0,0,0,0,0,1,18,5,6,1,3,3,0,16,11,2,3,2,1,0,3,3,0,0,0,0,2,0,2,0,1,5,0,0,0,0,1,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T13:07:28.532Z"}},{"type":"Public","name":"cwl-graph-generate","owner":"wtsi-hgi","isFork":false,"description":"Generates https://view.commonwl.org/ like workflows images, showing a complete workflow.","allTopics":["graph","image-generation","cwl"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T19:42:17.422Z"}},{"type":"Public","name":"sarek","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":[20,17,0,0,2,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,12,0,0,4,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,9,0,1,0,1,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T10:10:40.479Z"}},{"type":"Public","name":"softpack-frontend","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T08:58:45.431Z"}},{"type":"Public","name":"MAVEQC","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":[8,1,1,1,0,0,2,0,0,0,0,0,0,0,0,2,2,0,0,0,0,0,0,1,7,0,3,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T08:42:12.864Z"}},{"type":"Public","name":"http-proxy-logger","owner":"wtsi-hgi","isFork":true,"description":"HTTP proxy server that logs requests and responses","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T12:44:11.632Z"}}],"repositoryCount":405,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"wtsi-hgi repositories"}