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mapping.py
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def mapping_data_mutless(cls):
return {
"mutations": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"division": {
"type": "keyword",
},
"division_lower": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"country": {
"type": "keyword",
},
"country_lower": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"date_submitted": {
"type": "keyword"
},
"date_collected": {
"type": "keyword"
},
"date_modified": {
"type": "keyword"
},
"country_id": {
"type": "keyword"
},
"pangolin_lineage": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"pangolin_lineage_crumbs": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"location": {
"type": "keyword"
},
"location_lower": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"location_id": {
"type": "keyword"
},
"division_id": {
"type": "keyword"
},
"accession_id": {
"type": "keyword"
}
}
def mapping_data_muts(cls):
return {
"type": {
"type": "keyword"
},
"mutation": {
"type": "keyword",
"normalizer": "keyword_lowercase_normalizer"
},
"gene": {
"type": "keyword"
},
"ref_codon": {
"type": "keyword"
},
"alt_codon": {
"type": "keyword"
},
"is_synonymous": {
"type": "keyword"
},
"ref_aa": {
"type": "keyword"
},
"codon_num": {
"type": "keyword"
},
"alt_aa": {
"type": "keyword"
}
}