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docker-compose.yml
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docker-compose.yml
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version: '3.7'
services:
keycloak-server:
image: docker.io/bitnami/keycloak:22
environment:
- KC_DB=postgres
- KC_DB_URL=jdbc:postgresql://keycloak-postgresql/bitnami_keycloak
- KC_DB_USERNAME=bn_keycloak
# default expiration days of apiKeys is 365
# - APIKEY_DURATION_DAYS=365
ports:
- "9082:8080"
depends_on:
- keycloak-postgresql
volumes:
- type: bind
source: ./docker/keycloak-init/data_import
target: /opt/bitnami/keycloak/data/import
command:
- /bin/bash
- -c
- |
curl -sL https://github.com/oicr-softeng/keycloak-apikeys/releases/download/1.0.1/keycloak-apikeys-1.0.1.jar -o /opt/bitnami/keycloak/providers/keycloak-apikeys-1.0.1.jar
kc.sh start-dev --import-realm
keycloak-postgresql:
image: docker.io/bitnami/postgresql:11
environment:
# ALLOW_EMPTY_PASSWORD is recommended only for development.
- ALLOW_EMPTY_PASSWORD=yes
- POSTGRESQL_USERNAME=bn_keycloak
- POSTGRESQL_DATABASE=bitnami_keycloak
expose:
- "5432"
ports:
- "9444:5432"
object-storage:
#NOTE: must use 2018-05-11 version, since the ETag rules are different. 2018 will return the part md5, anything newer will not, and score-server expects etag==md5
image: minio/minio:RELEASE.2018-05-11T00-29-24Z
environment:
MINIO_ACCESS_KEY: minio
MINIO_SECRET_KEY: minio123
command: server /data
healthcheck:
test: ["CMD", "curl", "-f", "http://localhost:9000/minio/health/live"]
interval: 30s
timeout: 20s
retries: 3
ports:
- "8085:9000"
score-server:
image: overture/score-server:47f006ce
user: "$MY_UID:$MY_GID"
environment:
SPRING_PROFILES_ACTIVE: amazon,collaboratory,prod,secure
SERVER_PORT: 8080
OBJECT_SENTINEL: heliograph
BUCKET_NAME_OBJECT: score.data
BUCKET_NAME_STATE: score.data
COLLABORATORY_DATA_DIRECTORY: data
METADATA_URL: http://song-server:8080
S3_ENDPOINT: http://object-storage:9000
S3_ACCESSKEY: minio
S3_SECRETKEY: minio123
S3_SIGV4ENABLED: "true"
# Keycloak Variables
SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_JWK_SET_URI: http://keycloak-server:8080/realms/myrealm/protocol/openid-connect/certs
AUTH_SERVER_PROVIDER: keycloak
AUTH_SERVER_CLIENTID: system
AUTH_SERVER_CLIENTSECRET: systemsecret
AUTH_SERVER_TOKENNAME: apiKey
AUTH_SERVER_KEYCLOAK_HOST: http://keycloak-server:8080
AUTH_SERVER_KEYCLOAK_REALM: myrealm
AUTH_SERVER_URL: http://keycloak-server:8080/realms/myrealm/apikey/check_api_key/
AUTH_SERVER_SCOPE_DOWNLOAD_SYSTEM: score.READ
AUTH_SERVER_SCOPE_DOWNLOAD_STUDY_PREFIX: score.
AUTH_SERVER_SCOPE_DOWNLOAD_STUDY_SUFFIX: .READ
AUTH_SERVER_SCOPE_UPLOAD_SYSTEM: score.WRITE
AUTH_SERVER_SCOPE_UPLOAD_STUDY_PREFIX: score.
AUTH_SERVER_SCOPE_UPLOAD_STUDY_SUFFIX: .WRITE
SERVER_SSL_ENABLED: "false"
UPLOAD_PARTSIZE: 1073741824
UPLOAD_CONNECTION_TIMEOUT: 1200000
LOGGING_LEVEL_BIO_OVERTURE_SCORE_SERVER: DEBUG
LOGGING_LEVEL_ORG_APACHE_HTTP_WIRE: DEBUG
LOGGING_LEVEL_ORG_APACHE_HTTP_HEADERS: DEBUG
ENDPOINTS_DUMP_ENABLED: "false"
ENDPOINTS_ENV_ENABLED: "true"
ENDPOINTS_INFO_ENABLED: "true"
ports:
- "8087:8080"
depends_on:
- object-storage
volumes:
- "./docker/scratch/score-server-logs:/score-server/logs"
score-client:
image: overture/score:latest
environment:
ACCESSTOKEN: 07a5a12e-a85f-4248-a9a1-851a8062b6ac
METADATA_URL: http://song-server:8080
STORAGE_URL: http://score-server:8080
volumes:
- "./docker/song-example-data:/data/submit"
- "./docker/scratch/score-client-logs:/score-client/logs"
- "./docker/scratch/song-client-output:/song-client/output"
command: bin/score-client
user: "$MY_UID:$MY_GID"
song-db:
image: postgres:11.1
environment:
POSTGRES_DB: song
POSTGRES_USER: postgres
POSTGRES_PASSWORD: password
ports:
- "8432:5432"
volumes:
- "./docker/song-db-init:/docker-entrypoint-initdb.d"
healthcheck:
test: [ "CMD-SHELL", "pg_isready -U postgres" ]
interval: 15s
timeout: 15s
retries: 5
aws-cli:
image: "mesosphere/aws-cli:latest"
environment:
AWS_ACCESS_KEY_ID: minio
AWS_SECRET_ACCESS_KEY: minio123
AWS_DEFAULT_REGION: us-east-1
volumes:
- "./docker/object-storage-init/data/score.data/data:/score-data:ro"
song-client:
build:
context: ./
dockerfile: "$DOCKERFILE_NAME"
target: client
environment:
CLIENT_ACCESS_TOKEN: 07a5a12e-a85f-4248-a9a1-851a8062b6ac
CLIENT_STUDY_ID: ABC123
CLIENT_DEBUG: "true"
CLIENT_SERVER_URL: http://song-server:8080
JAVA_TOOL_OPTIONS: -agentlib:jdwp=transport=dt_socket,address=*:5005,server=y,suspend=n
ports:
- "5005:5005"
volumes:
- "./docker/song-example-data:/data/submit"
- "./docker/scratch/song-client-logs:/song-client/logs"
- "./docker/scratch/song-client-output:/song-client/output"
command: bin/sing
user: "$MY_UID:$MY_GID"
song-server:
build:
context: ./
dockerfile: "$DOCKERFILE_NAME"
target: server
environment:
SERVER_PORT: 8080
SPRING_PROFILES_ACTIVE: "prod,secure,default"
SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_JWK_SET_URI: http://keycloak-server:8080/realms/myrealm/protocol/openid-connect/certs
AUTH_SERVER_INTROSPECTIONURI: http://keycloak-server:8080/realms/myrealm/apikey/check_api_key/
AUTH_SERVER_TOKENNAME: apiKey
AUTH_SERVER_CLIENTID: system
AUTH_SERVER_CLIENTSECRET: systemsecret
AUTH_SERVER_PROVIDER: keycloak
AUTH_SERVER_KEYCLOAK_HOST: http://keycloak-server:8080
AUTH_SERVER_KEYCLOAK_REALM: myrealm
AUTH_SERVER_SCOPE_STUDY_PREFIX: PROGRAMDATA.
AUTH_SERVER_SCOPE_STUDY_SUFFIX: .WRITE
AUTH_SERVER_SCOPE_SYSTEM: song.WRITE
SCORE_URL: http://score-server:8080
SCORE_ACCESSTOKEN: 07a5a12e-a85f-4248-a9a1-851a8062b6ac
MANAGEMENT_SERVER_PORT: 8081
SPRING_DATASOURCE_USERNAME: postgres
SPRING_DATASOURCE_PASSWORD: password
SPRING_DATASOURCE_URL: jdbc:postgresql://song-db/song?stringtype=unspecified
SPRING_FLYWAY_ENABLED: "true"
SPRING_FLYWAY_LOCATIONS: "classpath:db/migration"
JAVA_TOOL_OPTIONS: -agentlib:jdwp=transport=dt_socket,address=*:5006,server=y,suspend=n
restart: always
ports:
- "5006:5006"
- "8080:8080"
depends_on:
song-db:
condition: service_healthy
volumes:
- "./docker/scratch/song-server-logs:/song-server/logs"
user: song
volumes:
object-storage-data: {}