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Some glycopeptides cannot be plotted in gLabel #17

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lonelu opened this issue Nov 16, 2018 · 2 comments
Open

Some glycopeptides cannot be plotted in gLabel #17

lonelu opened this issue Nov 16, 2018 · 2 comments

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@lonelu
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lonelu commented Nov 16, 2018

gLable batch works for one of my tasks,
but in a recent task, it output
"**** Finish batch output ****
0 GPSMs, 0.002 seconds
**** Finish batch output ****
no psm of spectrum "02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta" in result files
Whie in the result file, I have three glycopeptide identified:

GlySpec PepSpec RT PrecursorMH Rank Peptide Mod PeptideMH Glycan(H,N,A,G,F) PlausibleStruct GlyID GlyFrag GlyMass GlySite TotalScore PepScore GlyScore CoreMatched CoreFuc MassDeviation PPM GlyIonRatio PepIonRatio GlyDecoy PepDecoy GlycanFDR PeptideFDR TotalFDR
02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta 02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta 2072.953 3116.338 1 TKPREEQYJSTYR null 1671.809 3 4 0 0 1 (N(F)(N(H(H(N))(H(N))))) 96 0 1 0 0 0 ;0 1 0 0 1 ;0 2 0 0 0 ;0 2 0 0 1 ;1 2 0 0 0 ;1 2 0 0 1 ;2 2 0 0 0 ;2 2 0 0 1 ;3 2 0 0 0 ;2 3 0 0 0 ;3 2 0 0 1 ;2 3 0 0 1 ;3 3 0 0 0 ;3 3 0 0 1 ;3 4 0 0 0 ; 1444.534 9 25.53344 0.50147 72.02138 9 12 -0.00398 -1.27672 1 0.08333 0 0 0 0 0

Did I do something wrong?

@jalew188
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@lonelu In your result, the PepScore is too low. You can set the lowest score in glabel.gconf.

@jalew188
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@lonelu Is this problem solved?

@jalew188 jalew188 changed the title gLable not functioning weird Some glycopeptides cannot be plotted in gLabel Dec 20, 2018
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