diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index cec05cf..293bb14 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-08-10") + +Annotation(owl:versionInfo "2024-08-16") Declaration(Class()) Declaration(Class()) @@ -6192,6 +6192,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -15590,6 +15591,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") Annotation( "GOC:cg") Annotation( "GOC:wdd") "A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models.") AnnotationAssertion( ) +AnnotationAssertion( "2017-01-30T18:53:32Z"^^xsd:dateTime) AnnotationAssertion( "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12913") AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "https://github.com/obophenotype/cell-ontology/issues/448") @@ -15602,6 +15604,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") Annotation( "GOC:cg") Annotation( "GOC:wdd") "An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism.") AnnotationAssertion( ) +AnnotationAssertion( "2017-01-30T19:16:26Z"^^xsd:dateTime) AnnotationAssertion( "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12922") AnnotationAssertion( "tumor cell") AnnotationAssertion( "tumour cell") @@ -15616,6 +15619,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") Annotation( "GOC:cg") Annotation( "GOC:wdd") "A neoplastic cell that is capable of entering a surrounding tissue") AnnotationAssertion( ) +AnnotationAssertion( "2017-01-30T19:39:12Z"^^xsd:dateTime) AnnotationAssertion( "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12917") AnnotationAssertion( "cancer cell") AnnotationAssertion( ) @@ -16838,6 +16842,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:32094117") Annotation( "PMID:7196501") Annotation( "http://orcid.org/0000-0003-2034-601X") "A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development.") AnnotationAssertion( ) +AnnotationAssertion( "2022-02-21T15:39:10Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "embryonic skeletal muscle fiber") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -17126,6 +17131,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:9108778") "A smooth muscle cell that is part of any blood vessel.") AnnotationAssertion( ) +AnnotationAssertion( "2020-07-21T12:42:48Z"^^xsd:dateTime) AnnotationAssertion( "smooth muscle cell of blood vessel") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood vessel smooth muscle cell"@en) @@ -18030,6 +18036,7 @@ SubClassOf( ObjectSomeValuesFrom( (blood lymphocyte) AnnotationAssertion(Annotation( ) "A lymphocyte located in blood.") +AnnotationAssertion( "2022-11-04T14:40:00Z"^^xsd:dateTime) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood lymphocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -18039,6 +18046,7 @@ SubClassOf( (respiratory ciliated cell) AnnotationAssertion(Annotation( "PMID:18757316") Annotation( "PMID:21364219") "A ciliated cell of the respiratory system. Ciliated cells are present in airway epithelium.") +AnnotationAssertion( "2023-01-25T11:06:01Z"^^xsd:dateTime) AnnotationAssertion( "ciliated cell of the respiratory tract") AnnotationAssertion(rdfs:label "respiratory ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -18060,6 +18068,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:33351116") "A megakaryocyte that is resident in the lung connective tissue.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "2023-03-16T11:31:23Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:36524131") "lung resident megakaryocyte") AnnotationAssertion(Annotation( "PMID:36524131") "lung-resident megakaryocyte") AnnotationAssertion( ) @@ -18073,6 +18082,7 @@ SubClassOf( ObjectSomeValuesFrom( "DOI:10.1111/j.1096-3642.1981.tb01137.x") Annotation( "PMID:10052456") Annotation( "PMID:28655883") Annotation( "http://www.nejohnston.org/Birds/documents/AvianTongues_Johnston.pdf") "A taste receptor cell that is part of a taste bud of a tongue.") AnnotationAssertion( ) +AnnotationAssertion( "2023-05-03T07:59:58Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "DOI:10.1016/s0022-5320(69)80043-2") "gustatory cell of tongue") AnnotationAssertion(rdfs:label "taste receptor cell of tongue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -18085,6 +18095,7 @@ SubClassOf( ObjectSomeValuesFrom( "ISBN:0521442516") Annotation( "PMID:12094209") "A neuron that releases catecholamine as a neurotransmitter.") AnnotationAssertion( ) +AnnotationAssertion( "2023-05-18T12:07:45Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:10191060") Annotation( "PMID:12128258") Annotation( "PMID:34880760") Annotation( "https://orcid.org/0000-0002-2244-7917") rdfs:comment "Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis.") AnnotationAssertion(rdfs:label "catecholaminergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -18096,6 +18107,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:24928499") Annotation( "PMID:27889329") "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.") AnnotationAssertion( ) +AnnotationAssertion( "2023-08-22T13:40:28Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "perivascular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -18105,6 +18117,7 @@ SubClassOf( ObjectSomeValuesFrom( ) "Any mesenchymal stem cell of adipose tissue that is part of an orbital region.") AnnotationAssertion( ) +AnnotationAssertion( "2023-09-18T10:43:00Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:31377878") "OAMSC") AnnotationAssertion(Annotation( "PMID:30210548") "Orbital ASCs") AnnotationAssertion(Annotation( "PMID:31377878") "orbital adipose-derived mesenchymal stem cell") @@ -65043,6 +65056,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (reproductive system) AnnotationAssertion(Annotation( "Wikipedia:Reproductive_system") "Anatomical system that has as its parts the organs concerned with reproduction.") +AnnotationAssertion( "2022-06-10T18:22:34Z"^^xsd:dateTime) AnnotationAssertion( "AAO:0010258") AnnotationAssertion( "BILA:0000103") AnnotationAssertion( "BTO:0000081") @@ -93661,6 +93675,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "A capillary that is part of the brain.") AnnotationAssertion( ) +AnnotationAssertion( "2022-06-24T09:28:31Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8480001") AnnotationAssertion(rdfs:label "capillary of brain") @@ -93672,6 +93687,7 @@ SubClassOf( "https://orcid.org/0000-0002-0819-0473") "A portion of smooth muscle tissue that is part of the thoracic aorta.") AnnotationAssertion( ) +AnnotationAssertion( "2022-06-24T09:30:54Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8480002") AnnotationAssertion(rdfs:label "thoracic aorta smooth muscle tissue") @@ -93683,6 +93699,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "A zone of skin that is above the clavicle zone in the pectoral girdle region.") AnnotationAssertion( ) +AnnotationAssertion( "2022-08-29T14:17:12Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8480025") AnnotationAssertion(rdfs:label "skin of clavicle region") @@ -93694,6 +93711,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "A zone of skin that is part of the external genitalia.") AnnotationAssertion( ) +AnnotationAssertion( "2022-08-30T06:55:06Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8480029") AnnotationAssertion(rdfs:label "skin of external genitalia") @@ -93706,6 +93724,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "A zone of skin part of some gonad.") AnnotationAssertion( ) +AnnotationAssertion( "2023-08-29T10:24:24Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8480074") AnnotationAssertion(rdfs:label "skin of gonad") @@ -93718,6 +93737,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "BTO:0002780") Annotation( "CLAO:0001295") "A muscle tissue that is associated with soft internal organs (viscera).") AnnotationAssertion( ) +AnnotationAssertion( "2023-02-16T10:17:46Z"^^xsd:dateTime) AnnotationAssertion(Annotation(rdfs:comment "BTO:0002780") "visceral muscle") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8600004") @@ -93730,6 +93750,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "PMID:8720463") Annotation( "https://pressbooks.pub/rbtallitsch/chapter/chapter-6-muscle-tissue/") "A striated muscle tissue that is associated with soft internal organs (viscera).") AnnotationAssertion( ) +AnnotationAssertion( "2023-02-16T10:34:43Z"^^xsd:dateTime) AnnotationAssertion( "striated visceral muscle tissue") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8600006") @@ -93741,6 +93762,7 @@ SubClassOf( "PMID:22283705") Annotation( "PMID:30247823") "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa.") AnnotationAssertion( ) +AnnotationAssertion( "2023-10-24T11:26:27Z"^^xsd:dateTime) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8600024") AnnotationAssertion(rdfs:label "pulmonary venule")