From 2b6f54c60736fb2ba140c23855ccc50b4b70b5a3 Mon Sep 17 00:00:00 2001 From: matentzn Date: Sun, 1 Sep 2024 01:55:26 +0000 Subject: [PATCH] Update imports and components --- src/ontology/imports/merged_import.owl | 86 +++++++++++++++++++------- 1 file changed, 65 insertions(+), 21 deletions(-) diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 293bb14..680eb49 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-08-16") + +Annotation(owl:versionInfo "2024-09-01") Declaration(Class()) Declaration(Class()) @@ -586,7 +586,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -787,7 +786,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4156,6 +4159,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14603,12 +14607,13 @@ SubClassOf( ObjectSomeValuesFrom( (trophoblast cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MESH:D014327") "A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MESH:D014327") Annotation( "PMID:37630754") Annotation(rdfs:comment "doi:10.1007/978-3-030-84725-8") "An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development.") AnnotationAssertion( "FMA:83028") -AnnotationAssertion( "trophoblastic cell") +AnnotationAssertion(Annotation( "doi:10.1007/978-3-030-84725-8") "trophoblastic cell") AnnotationAssertion(rdfs:label "trophoblast cell") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epiblast cell) @@ -15891,17 +15896,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (mucous cell of stomach) - -AnnotationAssertion(Annotation( "GOC:tfm") "A mucous cell in the epithelium of the stomach.") -AnnotationAssertion( ) -AnnotationAssertion( "2010-08-25T03:38:51Z"^^xsd:dateTime) -AnnotationAssertion( "FMA:63464") -AnnotationAssertion(rdfs:label "mucous cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (stem cell of gastric gland) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") "A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit.") @@ -15911,8 +15905,7 @@ AnnotationAssertion( "stem cell of gastric gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (vertebrate lens cell) @@ -16380,6 +16373,7 @@ AnnotationAssertion( AnnotationAssertion( "BTO:0001220") AnnotationAssertion( "CALOHA:TS-0898") AnnotationAssertion( "MESH:D012583") +AnnotationAssertion(Annotation( "PMID:32119275") Annotation( "PMID:38638689") "neurolemmocyte") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:16807057") rdfs:comment "A myelinating Schwann cell wraps around a single axon. Myelination occurs in larger diameter axons, while a process called ensheathment occurs on smaller diameter axons in which a single cell wraps around multiple small, unmyelinated axons separating them with a thin layer of cytoplasm. The structure formed is called a Remak bundle.") @@ -16532,14 +16526,15 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (glandular cell of stomach) +# Class: (glandular epithelial cell of stomach) AnnotationAssertion(Annotation( "GOC:tfm") "A glandular epithelial cell that is part of the stomach.") AnnotationAssertion( ) AnnotationAssertion( "2011-07-11T01:20:35Z"^^xsd:dateTime) AnnotationAssertion( "CALOHA:TS-1284") AnnotationAssertion( "FMA:86554") -AnnotationAssertion(rdfs:label "glandular cell of stomach") +AnnotationAssertion( "glandular cell of stomach") +AnnotationAssertion(rdfs:label "glandular epithelial cell of stomach") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -18113,6 +18108,18 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (cycling myeloid cell) + +AnnotationAssertion(Annotation( "PMID:38301653") "A(n) myeloid cell that is cycling.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-07-02T09:14:23Z") +AnnotationAssertion(Annotation( "PMID:38301653") "proliferating myeloid cell") +AnnotationAssertion(rdfs:label "cycling myeloid cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (mesenchymal stem cell of orbital adipose tissue) AnnotationAssertion(Annotation( ) "Any mesenchymal stem cell of adipose tissue that is part of an orbital region.") @@ -18126,6 +18133,43 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (cycling stromal cell) + +AnnotationAssertion(Annotation( "PMID:34497389") "A(n) stromal cell that is cycling.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-07-19T09:14:23Z") +AnnotationAssertion(Annotation( "PMID:34497389") "proliferating stromal cell") +AnnotationAssertion(rdfs:label "cycling stromal cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cycling glial cell) + +AnnotationAssertion(Annotation( "PMID:34497389") "A(n) glial cell that is cycling.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-07-19T09:14:23Z") +AnnotationAssertion(Annotation( "PMID:34497389") "proliferating glial cell") +AnnotationAssertion(rdfs:label "cycling glial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cycling neuroblast (sensu Vertebrata)) + +AnnotationAssertion(Annotation( "PMID:34497389") "A(n) neuroblast (sensu Vertebrata) that is cycling.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-07-19T09:14:23Z") +AnnotationAssertion(Annotation( "PMID:34497389") "proliferating neuroblast (sensu Vertebrata)") +AnnotationAssertion(rdfs:label "cycling neuroblast (sensu Vertebrata)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (vacuole inheritance) AnnotationAssertion(Annotation( "GOC:mcc") Annotation( "PMID:10873824") Annotation( "PMID:14616069") "The distribution of vacuoles into daughter cells after mitosis or meiosis, mediated by interactions between vacuoles and the cytoskeleton.")