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Lump warnings of "Not all environment variables were populated in derived attribute source" #364

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nsheff opened this issue Mar 21, 2021 · 0 comments
Open

Lump warnings of "Not all environment variables were populated in derived attribute source" #364

nsheff opened this issue Mar 21, 2021 · 0 comments
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enhancement - users priority-low

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@nsheff
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nsheff commented Mar 21, 2021

peppy/peppy/sample.py

Lines 188 to 189 in 7743178

_LOGGER.warning("Not all environment variables were populated "
"in derived attribute source: {}".format(regex))

We should collect these messages and display just once per project, rather than once per sample. Otherwise we get output like this:

Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-                          
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
Not all environment variables were populated in derived attribute source: $REFGENIE_RAW/{genome}-{asset}-
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