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Pin version of nf-validation and nf-iridanext #11

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apetkau opened this issue Feb 22, 2024 · 0 comments
Open

Pin version of nf-validation and nf-iridanext #11

apetkau opened this issue Feb 22, 2024 · 0 comments
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enhancement New feature or request

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@apetkau
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apetkau commented Feb 22, 2024

Issue

An upcoming upgrade of the nf-validation plugin from 1.1.3 to 2.0.0 will make breaking changes (nextflow-io/plugins#66). Right now, this pipeline uses the latest version of nf-validation and so will stop functioning when this upgrade occurs.

Solution

  1. Pin Nextflow plugin versions
    These should be pinned to specific versions (i.e., change to [email protected] and [email protected]). Pinning nf-iridanext since we might as well pin all plugin versions in this fix.
    // Nextflow plugins
    plugins {
    id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet
    id 'nf-iridanext'
    }
  2. Update version
    Update version to indicate a bug fix to 1.0.1:
    version = '1.1.0.dev'
  3. Update CHANGELOG.md to list the change. https://github.com/phac-nml/fetchdatairidanext/blob/dev/CHANGELOG.md
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