From 1a28209568c1e980e8ad693c4971bc42f5a75139 Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Thu, 5 Sep 2024 10:33:32 -0400 Subject: [PATCH] Updated README.md with urls to Databases on Zenodo.org and constants.py SISTR_DB_URL global varibale with new url --- README.rst | 2 +- sistr/src/serovar_prediction/constants.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.rst b/README.rst index 27fb06a..6686626 100644 --- a/README.rst +++ b/README.rst @@ -127,7 +127,7 @@ SISTR will automatically initialize database of *Salmonella* serovar determinati The SISTR database v1.3 got minor updates by collapsing some of the serovars detailed in ``CHANGELOG.md`` file - SISTR v1.1 database is available at https://zenodo.org/records/13618515 or via a direct url https://zenodo.org/records/13618515/files/SISTR_V_1.1_db.tar.gz?download=1 -- SISTR v1.3 database is available at +- SISTR v1.3 database is available at https://zenodo.org/records/13693495 or vua a direct url https://zenodo.org/records/13693495/files/SISTR_V_1.1.3_db.tar.gz?download=1 Dependencies diff --git a/sistr/src/serovar_prediction/constants.py b/sistr/src/serovar_prediction/constants.py index e83267c..cf37cf0 100644 --- a/sistr/src/serovar_prediction/constants.py +++ b/sistr/src/serovar_prediction/constants.py @@ -8,7 +8,7 @@ CGMLST_SUBSPECIATION_DISTANCE_THRESHOLD = 0.9 MASH_SUBSPECIATION_DISTANCE_THRESHOLD = 0.01 -SISTR_DB_URL = 'https://drive.usercontent.google.com/download?id=1OAVWUiMiPLJxPSm-Q88WMPSyk2UGJtl4&export=download&confirm=f' +SISTR_DB_URL = 'https://zenodo.org/records/13693495/files/SISTR_V_1.1.3_db.tar.gz?download=1' SISTR_DATA_DIR = resource_filename('sistr','data') SEROVAR_TABLE_PATH = resource_filename('sistr', 'data/Salmonella-serotype_serogroup_antigen_table-WHO_2007.csv') WZX_FASTA_PATH = resource_filename('sistr', 'data/antigens/wzx.fasta')