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Add PointFinder "Required_mut" column to pointfinder.tsv results #195

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apetkau opened this issue Aug 15, 2023 · 1 comment
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Add PointFinder "Required_mut" column to pointfinder.tsv results #195

apetkau opened this issue Aug 15, 2023 · 1 comment
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apetkau commented Aug 15, 2023 •
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There is a column, Required_mut, in the PointFinder database file resistens-overview.txt that lists mutations required to classify as resistant: https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/resistens-overview.txt

We should add Required_mut to the pointfinder.tsv results from StarAMR (named something like CGE_Required_mut.
@apetkau apetkau converted this from a draft issue Aug 15, 2023
@emarinier emarinier mentioned this issue Aug 17, 2023
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@emarinier emarinier moved this from Todo to Done in StarAMR 0.10.0 Aug 17, 2023
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apetkau commented Aug 18, 2023

Completed in #196

@apetkau apetkau closed this as completed Aug 18, 2023
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