From 8ea8586d7cf7ad5e410efbe11a0bd2ac1a9ce5de Mon Sep 17 00:00:00 2001
From: Edoardo Mancini <edoardo.mancini@roche.com>
Date: Fri, 17 May 2024 10:49:00 +0000
Subject: [PATCH 1/9] #43 #44 Added new presenters and added presenter names

---
 data/presentation_archive.rda      | Bin 1143 -> 1697 bytes
 inst/presentation_archive.csv      |  26 +++++++++++++++-----------
 vignettes/presentation_archive.Rmd |   2 +-
 3 files changed, 16 insertions(+), 12 deletions(-)

diff --git a/data/presentation_archive.rda b/data/presentation_archive.rda
index 27e74aa6667713fbe116e98e4da21652abe3b471..affde7ff818390e0d2ccca74776723375d66bd21 100644
GIT binary patch
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diff --git a/inst/presentation_archive.csv b/inst/presentation_archive.csv
index 7e0cfab..fc633b2 100644
--- a/inst/presentation_archive.csv
+++ b/inst/presentation_archive.csv
@@ -1,11 +1,15 @@
-Year,Title,Conference,Material
-2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,[Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PAP_TT03.pdf) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PRE_TT03.pdf)
-2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,[Recording](https://www.youtube.com/watch?v=ZbV3E0_xrrI)
-2023,Cross Industry Package Development,R in Pharma 2023,[Recording](https://www.youtube.com/watch?v=M4L1PPMu0pU)
-2023,Paving the Way for Clinical Submissions in R,PHUSE SDE - London UK,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/EU/London/PRE_London09.pdf)
-2023,An overview of {admiral},PHUSE SDE - Summit NJ,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/US/Summit/PRE_Summit03.pdf)
-2023,{admiralonco},PHUSE US Connect 2023 - Orlando FL,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS12.mp4) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/PRE_OS12.pdf)
-2023,Programming ADNCA using R and {admiral},PHUSE US Connect 2023 - Orlando FL,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS09.mp4)
-2022,Clinical Reporting in R,R in Pharma 2022,[Workshop Recording](https://youtu.be/9eod8MLF5ys?si=T9_WwE-K8yGtZlOn)
-2022,Pharmaverse Workshop, PHUSE US Connect 2022 - Atlanta GA,[Slides and resources](https://github.com/pharmaverse/pharmaverse.workshop.phuseUS2022) (including `{admiral}` workshop slides from PHUSE EU Connect 2021)
-2021,Introducing {admiral}, R in Pharma 2021,[Recording](https://www.youtube.com/watch?v=N7Bw8c3D5fU)
+Year,Title,Conference,Presenter(s),Material
+2024,"From Stowaway to Admiral, a R-iveting Tale of a Hierarchical Composite Endpoint's Journey from Idea to Dataset",PHUSE US Connect 2024 - Bethesda MD,Nicole Major,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_AS02.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_AS02.pdf)
+2024,Population Pharmacokinetic Analysis Data (ADPPK) Programming in {admiral} and the pharmaverse, PHUSE US Connect 2024 - Bethesda MD, Jeff Dickinson,[Poster](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/POS_PP01.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_PP01.pdf)
+2024,{admiral} - from Open Source to Company Implementation, PHUSE US Connect 2024 - Bethesda MD, Ross Farrugia, [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS05.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PAP_OS05.pdf)
+2024,Bridging the Gap Between the pharmaverse and Company Internal Resources,PHUSE US Connect 2024 - Bethesda MD,Kangjie Zhang,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS12.pdf) [Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2024/Connect/US/Bethesda/PRE_OS12.pdf)
+2023,"Eyes On the Prize – The Development of {admiralophtha}, an R Package for Ophthalmology ADaMs",PHUSE EU Connect 2023 - Birmingham UK,Edoardo Mancini,[Paper](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PAP_TT03.pdf) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/EU/Birmingham/PRE_TT03.pdf)
+2023,{admiral} - from Open Source to Company Implementation,R in Pharma 2023,Edoardo Mancini,[Recording](https://www.youtube.com/watch?v=ZbV3E0_xrrI)
+2023,Cross Industry Package Development,R in Pharma 2023,Stefan Thoma,[Recording](https://www.youtube.com/watch?v=M4L1PPMu0pU)
+2023,Paving the Way for Clinical Submissions in R,PHUSE SDE - London UK,Declan Hodges,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/EU/London/PRE_London09.pdf)
+2023,An overview of {admiral},PHUSE SDE - Summit NJ,,[Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/US/Summit/PRE_Summit03.pdf)
+2023,{admiralonco},PHUSE US Connect 2023 - Orlando FL,Matthew Marino and Neharika Sharma,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS12.mp4) [Slides](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/PRE_OS12.pdf)
+2023,Programming ADNCA using R and {admiral},PHUSE US Connect 2023 - Orlando FL,Jeff Dickinson,[Recording](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS09.mp4)
+2022,Clinical Reporting in R,R in Pharma 2022,"Christina Fillmore, Ellis Hughes and Thomas Neitmann",[Workshop Recording](https://youtu.be/9eod8MLF5ys?si=T9_WwE-K8yGtZlOn)
+2022,Pharmaverse Workshop, PHUSE US Connect 2022 - Atlanta GA,"Ross Farrugia, Alice Ehmann, Mike Stackhouse and Tad Lewandowski",[Slides and resources](https://github.com/pharmaverse/pharmaverse.workshop.phuseUS2022) (including `{admiral}` workshop slides from PHUSE EU Connect 2021)
+2021,Introducing {admiral}, R in Pharma 2021,Thomas Neitmann and Ning Leng,[Recording](https://www.youtube.com/watch?v=N7Bw8c3D5fU)
diff --git a/vignettes/presentation_archive.Rmd b/vignettes/presentation_archive.Rmd
index e39ac8c..3bc73e4 100644
--- a/vignettes/presentation_archive.Rmd
+++ b/vignettes/presentation_archive.Rmd
@@ -24,7 +24,7 @@ In the table below you can find links to material from various `{admiral}`-relat
 admiraldiscovery::presentation_archive |> 
   gt::gt() |>
   gt::fmt_markdown(columns = c("Material")) |>
-  gt::cols_width(Year ~ gt::pct(4), Material ~ gt::pct(8), c(Title, Conference) ~ gt::pct(20)) |>
+  gt::cols_width(Year ~ gt::pct(4), Material ~ gt::pct(8), `Presenter(s)` ~ gt::pct(6), c(Title, Conference) ~ gt::pct(15)) |>
   gt::cols_align(align = "left")
 ```
 

From e95a62b20865bd3fa740dfc5abe25b8b590fa88c Mon Sep 17 00:00:00 2001
From: Edoardo Mancini <edoardo.mancini@roche.com>
Date: Mon, 20 May 2024 07:23:13 +0000
Subject: [PATCH 2/9] #43 #44 chore: styler, lintr, roxygen checks

---
 man/presentation_archive.Rd        | 2 +-
 vignettes/presentation_archive.Rmd | 9 +++++++--
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/man/presentation_archive.Rd b/man/presentation_archive.Rd
index cb6de8d..120b48b 100644
--- a/man/presentation_archive.Rd
+++ b/man/presentation_archive.Rd
@@ -5,7 +5,7 @@
 \alias{presentation_archive}
 \title{Presentation Archive}
 \format{
-An object of class \code{spec_tbl_df} (inherits from \code{tbl_df}, \code{tbl}, \code{data.frame}) with 10 rows and 4 columns.
+An object of class \code{spec_tbl_df} (inherits from \code{tbl_df}, \code{tbl}, \code{data.frame}) with 14 rows and 5 columns.
 }
 \usage{
 presentation_archive
diff --git a/vignettes/presentation_archive.Rmd b/vignettes/presentation_archive.Rmd
index 3bc73e4..1bfcdc8 100644
--- a/vignettes/presentation_archive.Rmd
+++ b/vignettes/presentation_archive.Rmd
@@ -21,10 +21,15 @@ knitr::opts_chunk$set(
 In the table below you can find links to material from various `{admiral}`-related presentations given by members of our community over the years.
 
 ```{r echo=FALSE}
-admiraldiscovery::presentation_archive |> 
+admiraldiscovery::presentation_archive |>
   gt::gt() |>
   gt::fmt_markdown(columns = c("Material")) |>
-  gt::cols_width(Year ~ gt::pct(4), Material ~ gt::pct(8), `Presenter(s)` ~ gt::pct(6), c(Title, Conference) ~ gt::pct(15)) |>
+  gt::cols_width(
+    Year ~ gt::pct(4), 
+    Material ~ gt::pct(8), 
+    `Presenter(s)` ~ gt::pct(6), 
+    c(Title, Conference) ~ gt::pct(15)
+  )|>
   gt::cols_align(align = "left")
 ```
 

From caec5cd44c3a624336c0a96cdf95c7f6129c2f46 Mon Sep 17 00:00:00 2001
From: Edoardo Mancini <edoardo.mancini@roche.com>
Date: Mon, 20 May 2024 07:41:04 +0000
Subject: [PATCH 3/9] #43 #44 chore: lint

---
 R/get_fns_with_keyword.R           | 2 +-
 tests/spelling.R                   | 2 +-
 vignettes/presentation_archive.Rmd | 8 ++++----
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/R/get_fns_with_keyword.R b/R/get_fns_with_keyword.R
index e867da1..a4188ac 100644
--- a/R/get_fns_with_keyword.R
+++ b/R/get_fns_with_keyword.R
@@ -76,7 +76,7 @@ get_fns_with_keyword <- function(package, keyword, lib.loc = NULL) {
       }),
       alias = lapply(.data$rd_file_contents, extract_alias), # these are the function names
       has_keyword =
-        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |>
+        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |> #nolint
           unlist()
     )
 
diff --git a/tests/spelling.R b/tests/spelling.R
index 6713838..33ef2c7 100644
--- a/tests/spelling.R
+++ b/tests/spelling.R
@@ -1,3 +1,3 @@
-if(requireNamespace('spelling', quietly = TRUE))
+if (requireNamespace("spelling", quietly = TRUE))
   spelling::spell_check_test(vignettes = TRUE, error = FALSE,
                              skip_on_cran = TRUE)
diff --git a/vignettes/presentation_archive.Rmd b/vignettes/presentation_archive.Rmd
index 1bfcdc8..8ca59ed 100644
--- a/vignettes/presentation_archive.Rmd
+++ b/vignettes/presentation_archive.Rmd
@@ -25,11 +25,11 @@ admiraldiscovery::presentation_archive |>
   gt::gt() |>
   gt::fmt_markdown(columns = c("Material")) |>
   gt::cols_width(
-    Year ~ gt::pct(4), 
-    Material ~ gt::pct(8), 
-    `Presenter(s)` ~ gt::pct(6), 
+    Year ~ gt::pct(4),
+    Material ~ gt::pct(8),
+    `Presenter(s)` ~ gt::pct(6),
     c(Title, Conference) ~ gt::pct(15)
-  )|>
+  ) |>
   gt::cols_align(align = "left")
 ```
 

From 2831f8c2e9a2abf4195daafad8981853f09c32ec Mon Sep 17 00:00:00 2001
From: Edoardo Mancini <edoardo.mancini@roche.com>
Date: Mon, 20 May 2024 08:02:07 +0000
Subject: [PATCH 4/9] #43 #44 chore: styler

---
 R/get_fns_with_keyword.R | 2 +-
 tests/spelling.R         | 9 ++++++---
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/R/get_fns_with_keyword.R b/R/get_fns_with_keyword.R
index a4188ac..fcf3c98 100644
--- a/R/get_fns_with_keyword.R
+++ b/R/get_fns_with_keyword.R
@@ -76,7 +76,7 @@ get_fns_with_keyword <- function(package, keyword, lib.loc = NULL) {
       }),
       alias = lapply(.data$rd_file_contents, extract_alias), # these are the function names
       has_keyword =
-        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |> #nolint
+        lapply(.data$rd_file_contents, function(x) stringr::str_detect(x, pattern = glue::glue("\\\\keyword\\{[[keyword]]\\}", .open = "[[", .close = "]]"))) |> # nolint
           unlist()
     )
 
diff --git a/tests/spelling.R b/tests/spelling.R
index 33ef2c7..13f77d9 100644
--- a/tests/spelling.R
+++ b/tests/spelling.R
@@ -1,3 +1,6 @@
-if (requireNamespace("spelling", quietly = TRUE))
-  spelling::spell_check_test(vignettes = TRUE, error = FALSE,
-                             skip_on_cran = TRUE)
+if (requireNamespace("spelling", quietly = TRUE)) {
+  spelling::spell_check_test(
+    vignettes = TRUE, error = FALSE,
+    skip_on_cran = TRUE
+  )
+}

From 7e0c32e82d65d9bb4f6da732f7cb844cef3816e4 Mon Sep 17 00:00:00 2001
From: Daniel Sjoberg <danield.sjoberg@gmail.com>
Date: Mon, 20 May 2024 08:17:12 -0700
Subject: [PATCH 5/9] Update .lintr

---
 .lintr | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.lintr b/.lintr
index 6e19e74..1ecf867 100644
--- a/.lintr
+++ b/.lintr
@@ -2,5 +2,7 @@ linters: linters_with_defaults(
     line_length_linter(120),
     object_usage_linter=NULL,
     cyclocomp_linter(complexity_limit = 22),
-    undesirable_function_linter = undesirable_function_linter()
+    undesirable_function_linter=NULL,
+    brace_linter=NULL,
+    object_name_linter=NULL
   )

From 611cb810e4c32abcfa1f1906e6d20569f511f4b4 Mon Sep 17 00:00:00 2001
From: Daniel Sjoberg <danield.sjoberg@gmail.com>
Date: Mon, 20 May 2024 08:35:30 -0700
Subject: [PATCH 6/9] Update .lintr

---
 .lintr | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.lintr b/.lintr
index 1ecf867..21aa638 100644
--- a/.lintr
+++ b/.lintr
@@ -2,7 +2,8 @@ linters: linters_with_defaults(
     line_length_linter(120),
     object_usage_linter=NULL,
     cyclocomp_linter(complexity_limit = 22),
-    undesirable_function_linter=NULL,
+    undesirable_function_linter=undesirable_function_linter(),
     brace_linter=NULL,
     object_name_linter=NULL
   )
+

From 41ab5f2f6a7315652afc12d75d6259932af8f737 Mon Sep 17 00:00:00 2001
From: Daniel Sjoberg <danield.sjoberg@gmail.com>
Date: Mon, 20 May 2024 08:55:11 -0700
Subject: [PATCH 7/9] Update .lintr

---
 .lintr | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.lintr b/.lintr
index 21aa638..0b2a4cd 100644
--- a/.lintr
+++ b/.lintr
@@ -1,5 +1,6 @@
 linters: linters_with_defaults(
     line_length_linter(120),
+    indentation_linter=NULL,
     object_usage_linter=NULL,
     cyclocomp_linter(complexity_limit = 22),
     undesirable_function_linter=undesirable_function_linter(),

From 03fe284d861f7195232ca60ce30a28594057c2d5 Mon Sep 17 00:00:00 2001
From: Daniel Sjoberg <danield.sjoberg@gmail.com>
Date: Mon, 20 May 2024 14:41:45 -0700
Subject: [PATCH 8/9] Update DESCRIPTION

---
 DESCRIPTION | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 52e8788..b56c1bd 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: admiraldiscovery
 Title: Discover admiral Functions
-Version: 0.1.1.9000
+Version: 0.1.1.9001
 Authors@R: c(
     person("Daniel D.", "Sjoberg", , "danield.sjoberg@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0003-0862-2018")),

From 3a4189ee18cfaa6d34c22c67bbb2554c64fb4b49 Mon Sep 17 00:00:00 2001
From: Daniel Sjoberg <danield.sjoberg@gmail.com>
Date: Mon, 20 May 2024 14:44:23 -0700
Subject: [PATCH 9/9] Update NEWS.md

---
 NEWS.md | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/NEWS.md b/NEWS.md
index 4236aea..b8d9173 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,9 @@
 # admiraldiscovery (development version)
 
+* Added additional presentations to the {admiral} presentation listing. (#44)
+
+* Added the names of the presenters to the {admiral} presentation listing. (#43)
+
 # admiraldiscovery 0.1.1
 
 * Converted presentation archive to a {gt} table.