From f5d189c2136153e1c3bc5555de4ee5f47f62b7c3 Mon Sep 17 00:00:00 2001 From: Quarto GHA Workflow Runner Date: Fri, 18 Oct 2024 10:35:19 +0000 Subject: [PATCH] Built site for gh-pages --- .nojekyll | 2 +- exercise_2.html | 4 ++-- search.json | 2 +- sitemap.xml | 24 ++++++++++++------------ 4 files changed, 16 insertions(+), 16 deletions(-) diff --git a/.nojekyll b/.nojekyll index 60edfa4..03bc276 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -f895cf68 \ No newline at end of file +b53e932d \ No newline at end of file diff --git a/exercise_2.html b/exercise_2.html index 23d3d1b..f324f92 100644 --- a/exercise_2.html +++ b/exercise_2.html @@ -286,8 +286,8 @@

Code

footer = footer )
-
[INFO] 2024-10-17 10:34:14.9915 pid:6013 token:[] teal.modules.general Initializing tm_front_page
-[INFO] 2024-10-17 10:34:14.9944 pid:6013 token:[] teal.modules.general Initializing tm_data_table
+
[INFO] 2024-10-18 10:35:16.1670 pid:6087 token:[] teal.modules.general Initializing tm_front_page
+[INFO] 2024-10-18 10:35:16.1698 pid:6087 token:[] teal.modules.general Initializing tm_data_table
if (Sys.getenv("QUARTO_ROOT") == "") {
   shinyApp(app$ui, app$server)
diff --git a/search.json b/search.json
index a3e2c90..64c9bef 100644
--- a/search.json
+++ b/search.json
@@ -25,7 +25,7 @@
     "href": "exercise_2.html",
     "title": "Exercise 2",
     "section": "",
-    "text": "Enhance your application with pre-built modules!\n\nuse teal.modules.general::tm_front_page() to create the first “welcome screen” of the application\nuse teal.modules.general::tm_data_table() to create a data previewer module\nuse teal.modules.clinical::tm_t_summary() to create a demographic summary table:\n\nplease read the documentation - especially arm_var and summarize_vars argument and what data type it takes\nuse both \"ARM\" and \"ARMCD\" as arm_var\nuse \"SEX\", \"AGE\" and \"RACE\" as summarize_vars\n\n\n\nCode\n\nlibrary(dplyr)\nlibrary(random.cdisc.data)\nlibrary(nestcolor)\nlibrary(teal.modules.general)\nlibrary(teal.modules.clinical)\n\n## Data reproducible code ----\ndata <- teal_data()\ndata <- within(data, {\n  ADSL <- radsl(cached = TRUE)\n  adsl_labels <- col_labels(ADSL, fill = FALSE)\n\n  char_vars_asl <- names(Filter(isTRUE, sapply(ADSL, is.character)))\n})\n# set datanames\ndatanames <- c(\"ADSL\")\ndatanames(data) <- datanames\n# set join_keys\njoin_keys(data) <- default_cdisc_join_keys[datanames]\n\n\n## Reusable Configuration For Modules\nADSL <- data[[\"ADSL\"]]\n\narm_vars <- c(\"ARMCD\", \"ARM\")\n\ncs_arm_var <- choices_selected(\n  choices = variable_choices(ADSL, subset = arm_vars),\n  selected = \"ARM\"\n)\n\n\ndate_vars_asl <- names(ADSL)[vapply(ADSL, function(x) inherits(x, c(\"Date\", \"POSIXct\", \"POSIXlt\")), logical(1))]\ndemog_vars_asl <- names(ADSL)[!(names(ADSL) %in% c(\"USUBJID\", \"STUDYID\", date_vars_asl))]\n\n\nheader <- tags$span(\n  style = \"display: flex; align-items: center; justify-content: space-between; margin: 10px 0 10px 0;\",\n  tags$span(\"Exercise 1\", style = \"font-size: 30px;\"),\n)\n\nfooter <- tags$p(\n  \"This teal app is brought to you by PhUSE SDE Basel\",\n)\n\n\napp <- init(\n  data = data,\n  modules = modules(\n    tm_front_page(\n      label = \"App Info\",\n      header_text = c(\n        \"Info about input data source\" =\n          \"This app uses CDISC ADaM datasets randomly generated by `random.cdisc.data` R packages\"\n      ),\n      tables = list(`NEST packages used in this demo app` = data.frame(\n        Packages = c(\"teal.modules.general\", \"teal.modules.clinical\", \"random.cdisc.data\")\n      ))\n    ),\n    tm_data_table(\"Data Table\"),\n    tm_t_summary(\n      label = \"Demographic Table\",\n      dataname = \"ADSL\",\n      arm_var = cs_arm_var,\n      summarize_vars = choices_selected(\n        choices = variable_choices(ADSL, demog_vars_asl),\n        selected = c(\"SEX\", \"AGE\", \"RACE\")\n      )\n    )\n  ),\n  title = build_app_title(\"Basic Teal Demo App\"),\n  header = header,\n  footer = footer\n)\n\n[INFO] 2024-10-17 10:34:14.9915 pid:6013 token:[] teal.modules.general Initializing tm_front_page\n[INFO] 2024-10-17 10:34:14.9944 pid:6013 token:[] teal.modules.general Initializing tm_data_table\n\nif (Sys.getenv(\"QUARTO_ROOT\") == \"\") {\n  shinyApp(app$ui, app$server)\n}\n\n\n\nURL\nOpen in Shinylive\n\n\nApp"
+    "text": "Enhance your application with pre-built modules!\n\nuse teal.modules.general::tm_front_page() to create the first “welcome screen” of the application\nuse teal.modules.general::tm_data_table() to create a data previewer module\nuse teal.modules.clinical::tm_t_summary() to create a demographic summary table:\n\nplease read the documentation - especially arm_var and summarize_vars argument and what data type it takes\nuse both \"ARM\" and \"ARMCD\" as arm_var\nuse \"SEX\", \"AGE\" and \"RACE\" as summarize_vars\n\n\n\nCode\n\nlibrary(dplyr)\nlibrary(random.cdisc.data)\nlibrary(nestcolor)\nlibrary(teal.modules.general)\nlibrary(teal.modules.clinical)\n\n## Data reproducible code ----\ndata <- teal_data()\ndata <- within(data, {\n  ADSL <- radsl(cached = TRUE)\n  adsl_labels <- col_labels(ADSL, fill = FALSE)\n\n  char_vars_asl <- names(Filter(isTRUE, sapply(ADSL, is.character)))\n})\n# set datanames\ndatanames <- c(\"ADSL\")\ndatanames(data) <- datanames\n# set join_keys\njoin_keys(data) <- default_cdisc_join_keys[datanames]\n\n\n## Reusable Configuration For Modules\nADSL <- data[[\"ADSL\"]]\n\narm_vars <- c(\"ARMCD\", \"ARM\")\n\ncs_arm_var <- choices_selected(\n  choices = variable_choices(ADSL, subset = arm_vars),\n  selected = \"ARM\"\n)\n\n\ndate_vars_asl <- names(ADSL)[vapply(ADSL, function(x) inherits(x, c(\"Date\", \"POSIXct\", \"POSIXlt\")), logical(1))]\ndemog_vars_asl <- names(ADSL)[!(names(ADSL) %in% c(\"USUBJID\", \"STUDYID\", date_vars_asl))]\n\n\nheader <- tags$span(\n  style = \"display: flex; align-items: center; justify-content: space-between; margin: 10px 0 10px 0;\",\n  tags$span(\"Exercise 1\", style = \"font-size: 30px;\"),\n)\n\nfooter <- tags$p(\n  \"This teal app is brought to you by PhUSE SDE Basel\",\n)\n\n\napp <- init(\n  data = data,\n  modules = modules(\n    tm_front_page(\n      label = \"App Info\",\n      header_text = c(\n        \"Info about input data source\" =\n          \"This app uses CDISC ADaM datasets randomly generated by `random.cdisc.data` R packages\"\n      ),\n      tables = list(`NEST packages used in this demo app` = data.frame(\n        Packages = c(\"teal.modules.general\", \"teal.modules.clinical\", \"random.cdisc.data\")\n      ))\n    ),\n    tm_data_table(\"Data Table\"),\n    tm_t_summary(\n      label = \"Demographic Table\",\n      dataname = \"ADSL\",\n      arm_var = cs_arm_var,\n      summarize_vars = choices_selected(\n        choices = variable_choices(ADSL, demog_vars_asl),\n        selected = c(\"SEX\", \"AGE\", \"RACE\")\n      )\n    )\n  ),\n  title = build_app_title(\"Basic Teal Demo App\"),\n  header = header,\n  footer = footer\n)\n\n[INFO] 2024-10-18 10:35:16.1670 pid:6087 token:[] teal.modules.general Initializing tm_front_page\n[INFO] 2024-10-18 10:35:16.1698 pid:6087 token:[] teal.modules.general Initializing tm_data_table\n\nif (Sys.getenv(\"QUARTO_ROOT\") == \"\") {\n  shinyApp(app$ui, app$server)\n}\n\n\n\nURL\nOpen in Shinylive\n\n\nApp"
   },
   {
     "objectID": "exercise_4.html",
diff --git a/sitemap.xml b/sitemap.xml
index c1a81fb..4be3bdf 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -2,50 +2,50 @@
 
   
     https://pharmaverse.github.io/examples/authors/tl.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/authors/kt.html
-    2024-10-17T10:32:34.396Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/authors/pr.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/exercise_2.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/exercise_4.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/exercise_3.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/exercise_1.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/about.html
-    2024-10-17T10:32:34.392Z
+    2024-10-18T10:33:29.363Z
   
   
     https://pharmaverse.github.io/examples/index.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/authors/pe.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/authors/template.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z
   
   
     https://pharmaverse.github.io/examples/authors/la.html
-    2024-10-17T10:32:34.400Z
+    2024-10-18T10:33:29.371Z