New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

file_get_scientific_names is a hack #16

Open

bomeara opened this issue Aug 2, 2018 · 0 comments

Assignees

Member

bomeara commented Aug 2, 2018

I wanted to use something like

results <- jsonlite::fromJSON(httr::POST(paste0(get_base_url(), 'fn/names_file'), body=list(inputFile=httr::upload_file(file_name), engine=search_engine)))

but it returned fine but with no species. I ended up hacking to use a system call instead

results <- jsonlite::fromJSON(system(paste0("curl -X POST http://phylo.cs.nmsu.edu:5004/phylotastic_ws/fn/names_file -F 'inputFile=@", file_name, "'  -F 'engine=", search_engine, "'"), intern=TRUE))

The text was updated successfully, but these errors were encountered:

bomeara assigned abusalehmdtayeen

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment