.gitpod.yml

workspaceLocation: gitpod/gitpod-ws.code-workspace
checkoutLocation: gitpod

github:
    prebuilds:
        # enable for the master/default branch (defaults to true)
        master: true
        # enable for all branches in this repo (defaults to false)
        branches: false
        # enable for pull requests coming from this repo (defaults to true)
        pullRequests: true
        # enable for pull requests coming from forks (defaults to false)
        pullRequestsFromForks: true
        # add a "Review in Gitpod" button as a comment to pull requests (defaults to true)
        addComment: true
        # add a "Review in Gitpod" button to pull requests (defaults to false)
        addBadge: false

# See .github/Dockerfile
image: ghcr.io/nextflow-io/training:latest

tasks:
    - before: printf 'unset JAVA_TOOL_OPTIONS\n' >> $HOME/.bashrc && exit

    - name: Start web server
      command: gp ports await 23000 && gp preview https://training.nextflow.io

    - name: Load Nextflow Tutorial
      command: docker pull -q nextflow/rnaseq-nf

    - name: Start Nextflow Tutorial
      command: |
          cd nf-training
          source $HOME/.bashrc
          export PS1='\[\e[3;36m\]${PWD/*\//} ->\[\e[0m\] '
          unset JAVA_TOOL_OPTIONS
          clear

vscode:
    extensions: # based on nf-core.nf-core-extensionpack
        - codezombiech.gitignore # Language support for .gitignore files
        - cssho.vscode-svgviewer # SVG viewer
        - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
        - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
        - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
        # - mechatroner.rainbow-csv # Highlight columns in csv files in different colors
        - nextflow.nextflow # Nextflow syntax highlighting
        # - oderwat.indent-rainbow # Highlight indentation level
        - streetsidesoftware.code-spell-checker # Spelling checker for source code
        - ms-vscode.live-server